Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
VCAM1	0	genome.wustl.edu	36	1	100969425	100969425	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	70fdce87-0e0c-489a-84bf-ad4e0206a8e7	4de3b1f0-997c-43ec-b5ea-4b5dc4367c3a	1	100969425	100969425	G	A	SNP	VCAM1	NM_001078.2	human	genbank	54_36p	+1	reviewed	missense	c.1288	p.V430M	0.987	HMMPfam_C2-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors	1112	0	0.00	597	258	30.18	8	0	0.00
KIDINS220	0	genome.wustl.edu	36	2	8807811	8807811	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	70fdce87-0e0c-489a-84bf-ad4e0206a8e7	4de3b1f0-997c-43ec-b5ea-4b5dc4367c3a	2	8807811	8807811	G	A	SNP	KIDINS220	NM_020738.2	human	genbank	54_36p	-1	validated	missense	c.3296	p.P1099L	0.282	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_KAP_NTPase	-	no_errors	608	0	0.00	296	190	39.09	19	17	47.22
OSTalpha	0	genome.wustl.edu	36	3	197439460	197439460	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	70fdce87-0e0c-489a-84bf-ad4e0206a8e7	4de3b1f0-997c-43ec-b5ea-4b5dc4367c3a	3	197439460	197439460	C	T	SNP	OSTalpha	NM_152672.5	human	genbank	54_36p	+1	validated	missense	c.440	p.T147M	0.998	NULL	NULL	-	no_errors	882	3	0.34	261	187	41.74	1	1	50.00
LOC100128340	0	genome.wustl.edu	36	5	177310899	177310899	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	70fdce87-0e0c-489a-84bf-ad4e0206a8e7	4de3b1f0-997c-43ec-b5ea-4b5dc4367c3a	5	177310899	177310899	C	T	SNP	LOC100128340	XM_001721455.1	human	genbank	54_36p	+1	model	missense	c.103	p.P35S	0.000	NULL	NULL	-	no_errors	221	0	0.00	100	63	38.65	1	0	0.00
CCDC136	0	genome.wustl.edu	36	7	128239200	128239200	+	Silent	SNP	G	G	A			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	70fdce87-0e0c-489a-84bf-ad4e0206a8e7	4de3b1f0-997c-43ec-b5ea-4b5dc4367c3a	7	128239200	128239200	G	A	SNP	CCDC136	NM_022742.3	human	genbank	54_36p	+1	validated	silent	c.2139	p.R713	0.972	superfamily_Spectrin repeat	superfamily_Prefoldin,superfamily_Spectrin repeat	-	no_errors	1272	0	0.00	409	310	43.06	0	1	100.00
ARID2	0	genome.wustl.edu	36	12	44540986	44540986	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	70fdce87-0e0c-489a-84bf-ad4e0206a8e7	4de3b1f0-997c-43ec-b5ea-4b5dc4367c3a	12	44540986	44540986	C	T	SNP	ARID2	NM_152641.2	human	genbank	54_36p	+1	validated	nonsense	c.4909	p.Q1637*	1.000	PatternScan_ZINC_FINGER_C2H2_1	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,PatternScan_ZINC_FINGER_C2H2_1,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors	767	1	0.13	623	220	26.04	16	3	15.79
LOC100132232	0	genome.wustl.edu	36	12	118403217	118403217	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	70fdce87-0e0c-489a-84bf-ad4e0206a8e7	4de3b1f0-997c-43ec-b5ea-4b5dc4367c3a	12	118403217	118403217	C	T	SNP	LOC100132232	XM_001716552.1	human	genbank	54_36p	-1	model	missense	c.88	p.D30N	0.075	NULL	NULL	-	no_errors	1226	3	0.24	350	219	38.49	NA	NA	NA
MYCBP2	0	genome.wustl.edu	36	13	76628271	76628271	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	70fdce87-0e0c-489a-84bf-ad4e0206a8e7	4de3b1f0-997c-43ec-b5ea-4b5dc4367c3a	13	76628271	76628271	G	A	SNP	MYCBP2	NM_015057.3	human	genbank	54_36p	-1	validated	missense	c.6724	p.R2242C	1.000	superfamily_E set domains	HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00184,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_PHR,superfamily_E set domains,superfamily_RING/U-box	-	no_errors	1751	6	0.34	951	306	24.31	27	13	32.50
MAX	0	genome.wustl.edu	36	14	64614500	64614500	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	70fdce87-0e0c-489a-84bf-ad4e0206a8e7	4de3b1f0-997c-43ec-b5ea-4b5dc4367c3a	14	64614500	64614500	C	T	SNP	MAX	NM_002382.3	human	genbank	54_36p	-1	reviewed	missense	c.179	p.R60Q	1.000	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors	536	2	0.37	252	32	11.27	339	79	18.76
ZNF788	0	genome.wustl.edu	36	19	12084966	12084966	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	70fdce87-0e0c-489a-84bf-ad4e0206a8e7	4de3b1f0-997c-43ec-b5ea-4b5dc4367c3a	19	12084966	12084966	G	A	SNP	ZNF788	ENST00000339302	human	ensembl	54_36p	+1	known	missense	c.1604	p.R535H	0.989	superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors	637	0	0.00	313	113	26.53	3	2	40.00
CNOT3	0	genome.wustl.edu	36	19	59348746	59348746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	70fdce87-0e0c-489a-84bf-ad4e0206a8e7	4de3b1f0-997c-43ec-b5ea-4b5dc4367c3a	19	59348746	59348746	C	T	SNP	CNOT3	ENST00000358389	human	ensembl	54_36p	+1	known	missense	c.1511	p.T504I	0.000	NULL	HMMPfam_Not3	-	no_errors	451	2	0.44	162	51	23.94	0	1	100.00
KRTAP26-1	0	genome.wustl.edu	36	21	30613984	30613984	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	70fdce87-0e0c-489a-84bf-ad4e0206a8e7	4de3b1f0-997c-43ec-b5ea-4b5dc4367c3a	21	30613984	30613984	C	T	SNP	KRTAP26-1	NM_203405.1	human	genbank	54_36p	-1	validated	missense	c.241	p.G81S	0.000	HMMPfam_PMG	HMMPfam_PMG	-	no_errors	1542	0	0.00	556	352	38.77	NA	NA	NA