Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
CHIT1	0	genome.wustl.edu	36	1	201452746	201452746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	1	201452746	201452746	C	T	SNP	CHIT1	NM_003465.2	human	genbank	54_36p	-1	reviewed	missense	c.1295	p.R432Q	0.000	HMMPfam_CBM_14,HMMSmart_SM00494,superfamily_Invertebrate chitin-binding proteins	HMMPfam_Glyco_hydro_18,PatternScan_CHITINASE_18,HMMPfam_CBM_14,HMMSmart_SM00494,superfamily_Invertebrate chitin-binding proteins,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain	-	no_errors	542	12	2.16	461	373	44.62	0	0	0.00
STRN	0	genome.wustl.edu	36	2	36996748	36996748	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	A	A	A	T	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	2	36996748	36996748	A	T	SNP	STRN	NM_003162.2	human	genbank	54_36p	-1	validated	missense	c.389	p.M130K	1.000	HMMPfam_Striatin	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_Striatin,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors	706	8	1.12	708	540	43.23	6	1	14.29
MAP2	0	genome.wustl.edu	36	2	210267579	210267579	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	2	210267579	210267579	G	A	SNP	MAP2	NM_002374.1	human	genbank	54_36p	+1	reviewed	missense	c.2440	p.G814S	1.000	HMMPfam_MAP2_projctn	HMMPfam_Tubulin-binding,PatternScan_TAU_MAP,HMMPfam_MAP2_projctn,HMMPfam_RII_binding_1	-	no_errors	1054	20	1.86	764	519	40.42	NA	NA	NA
NAT8L	0	genome.wustl.edu	36	4	2035305	2035305	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	4	2035305	2035305	G	A	SNP	NAT8L	NM_178557.2	human	genbank	54_36p	+1	provisional	missense	c.58	p.V20M	1.000	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors	68	4	5.56	57	52	47.71	NA	NA	NA
PCDHB11	0	genome.wustl.edu	36	5	140560654	140560654	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	5	140560654	140560654	T	C	SNP	PCDHB11	NM_018931.2	human	genbank	54_36p	+1	reviewed	missense	c.1123	p.S375P	0.965	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors	692	10	1.42	520	378	42.05	NA	NA	NA
SEMA3A	0	genome.wustl.edu	36	7	83474648	83474648	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	7	83474648	83474648	C	G	SNP	SEMA3A	NM_006080.2	human	genbank	54_36p	-1	reviewed	missense	c.1097	p.W366S	1.000	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMSmart_IG,HMMSmart_PSI,HMMPfam_ig,superfamily_Plexin-like_fold,superfamily_SSF48726	-	no_errors	842	26	2.99	571	470	45.11	NA	NA	NA
RPL27A	0	genome.wustl.edu	36	11	8662196	8662196	+	Silent	SNP	C	C	T			TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	11	8662196	8662196	C	T	SNP	RPL27A	NM_000990.4	human	genbank	54_36p	+1	reviewed	silent	c.135	p.F45	0.790	superfamily_Ribosomal proteins L15p and L18e	HMMPfam_L15,PatternScan_RIBOSOMAL_L15,superfamily_Ribosomal proteins L15p and L18e	-	no_errors	684	20	2.84	126	711	84.95	1	55	98.21
COL2A1	0	genome.wustl.edu	36	12	46666403	46666403	+	Missense_Mutation	SNP	C	C	A	rs121912880		TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	12	46666403	46666403	C	A	SNP	COL2A1	NM_001844.4	human	genbank	54_36p	-1	reviewed	missense	c.1510	p.G504C	0.990	HMMPfam_Collagen	HMMPfam_COLFI,HMMSmart_SM00038,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen	-	no_errors	317	9	2.76	222	174	43.94	NA	NA	NA
SMARCC2	0	genome.wustl.edu	36	12	54867346	54867346	+	Silent	SNP	A	A	G			TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	12	54867346	54867346	A	G	SNP	SMARCC2	NM_003075.1	human	genbank	54_36p	-1	reviewed	silent	c.123	p.A41	0.915	NULL	HMMSmart_SM00298,HMMSmart_SM00717,superfamily_BRCT domain,HMMPfam_SWIRM,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors	456	15	3.18	454	330	42.04	62	38	38.00
ELF1	0	genome.wustl.edu	36	13	40406066	40406066	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	13	40406066	40406066	A	G	SNP	ELF1	NM_172373.1	human	genbank	54_36p	-1	reviewed	missense	c.1355	p.I452T	1.000	NULL	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785	-	no_errors	1404	29	2.02	942	717	43.19	121	110	47.41
METTL3	0	genome.wustl.edu	36	14	21049123	21049123	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	14	21049123	21049123	T	C	SNP	METTL3	NM_019852.3	human	genbank	54_36p	-1	reviewed	missense	c.83	p.Q28R	1.000	NULL	HMMPfam_MT-A70	-	no_errors	414	8	1.89	239	124	34.16	21	24	53.33
DYNC1H1	0	genome.wustl.edu	36	14	101522818	101522818	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	14	101522818	101522818	C	T	SNP	DYNC1H1	NM_001376.4	human	genbank	54_36p	+1	reviewed	missense	c.2503	p.R835C	1.000	NULL	HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540	-	no_errors	1623	28	1.69	1212	666	35.44	28	20	41.67
JMJD5	0	genome.wustl.edu	36	16	27129319	27129319	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	16	27129319	27129319	T	G	SNP	JMJD5	NM_024773.1	human	genbank	54_36p	+1	reviewed	missense	c.374	p.M125R	1.000	NULL	HMMSmart_SM00558,superfamily_Clavaminate synthase-like	-	no_errors	382	8	2.05	251	178	41.30	5	1	16.67
NANOS2	0	genome.wustl.edu	36	19	51109510	51109510	+	Silent	SNP	C	C	T			TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	19	51109510	51109510	C	T	SNP	NANOS2	NM_001029861.2	human	genbank	54_36p	-1	validated	silent	c.282	p.R94	0.998	HMMPfam_zf-nanos	HMMPfam_zf-nanos	-	no_errors	812	23	2.75	339	294	46.37	NA	NA	NA
RUNX1	0	genome.wustl.edu	36	21	35174787	35174787	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2983-03A-01D-0739-09	TCGA-AB-2983-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14026827-734d-42a2-8803-03f598fe541e	707d05c9-0df6-4ed0-91a2-5cb30b3b42b8	21	35174787	35174787	C	G	SNP	RUNX1	NM_001754.2	human	genbank	54_36p	-1	reviewed	missense	c.445	p.A149P	0.988	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors	761	16	2.05	450	312	40.78	346	328	48.66