Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
ZYG11A	0	genome.wustl.edu	36	1	53102280	53102280	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	16f3a01d-16b0-4405-bab7-1e22fdeb0b24	79b57153-6800-44e6-9f71-4e7323b04470	1	53102280	53102280	C	T	SNP	ZYG11A	XM_001133615.1	human	genbank	54_36p	+1	model	nonsense	c.1189	p.R397*	0.996	NULL	superfamily_ARM repeat,superfamily_RNI-like	-	no_errors	578	6	1.03	534	104	16.30	NA	NA	NA
GBP4	0	genome.wustl.edu	36	1	89424735	89424735	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	16f3a01d-16b0-4405-bab7-1e22fdeb0b24	79b57153-6800-44e6-9f71-4e7323b04470	1	89424735	89424735	C	T	SNP	GBP4	NM_052941.4	human	genbank	54_36p	-1	validated	missense	c.1576	p.E526K	0.530	HMMPfam_GBP_C,superfamily_GBP	HMMPfam_GBP_C,HMMPfam_GBP,superfamily_GBP,superfamily_SSF52540	-	no_errors	1470	24	1.60	1485	717	32.53	8	8	50.00
KCNA3	0	genome.wustl.edu	36	1	111018259	111018259	+	Silent	SNP	C	C	T			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	16f3a01d-16b0-4405-bab7-1e22fdeb0b24	79b57153-6800-44e6-9f71-4e7323b04470	1	111018259	111018259	C	T	SNP	KCNA3	NM_002232.3	human	genbank	54_36p	-1	reviewed	silent	c.696	p.P232	0.967	superfamily_SSF81324	HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324	-	no_errors	214	8	3.57	275	272	49.45	15	9	37.50
TMEM198	0	genome.wustl.edu	36	2	220122163	220122163	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	16f3a01d-16b0-4405-bab7-1e22fdeb0b24	79b57153-6800-44e6-9f71-4e7323b04470	2	220122163	220122163	G	A	SNP	TMEM198	NM_001005209.1	human	genbank	54_36p	+1	provisional	missense	c.788	p.R263Q	0.998	NULL	NULL	-	no_errors	265	13	4.68	235	181	43.51	NA	NA	NA
LOC100131040	0	genome.wustl.edu	36	5	114534278	114534278	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	16f3a01d-16b0-4405-bab7-1e22fdeb0b24	79b57153-6800-44e6-9f71-4e7323b04470	5	114534278	114534278	A	G	SNP	LOC100131040	XM_001715034.1	human	genbank	54_36p	+1	model	missense	c.73	p.S25G	0.001	NULL	NULL	-	no_errors	239	9	3.61	260	191	42.35	NA	NA	NA
PKHD1	0	genome.wustl.edu	36	6	51632140	51632140	+	Silent	SNP	G	G	C			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	16f3a01d-16b0-4405-bab7-1e22fdeb0b24	79b57153-6800-44e6-9f71-4e7323b04470	6	51632140	51632140	G	C	SNP	PKHD1	NM_138694.3	human	genbank	54_36p	-1	reviewed	silent	c.10743	p.L3581	0.391	NULL	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8	-	no_errors	968	20	2.02	1292	1083	45.56	NA	NA	NA
TRIM24	0	genome.wustl.edu	36	7	137916991	137916991	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	16f3a01d-16b0-4405-bab7-1e22fdeb0b24	79b57153-6800-44e6-9f71-4e7323b04470	7	137916991	137916991	C	T	SNP	TRIM24	NM_015905.3	human	genbank	54_36p	+1	reviewed	missense	c.2728	p.R910C	0.998	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00502,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_RING_1,PatternScan_BROMODOMAIN_1,HMMPfam_zf-C3HC4,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_RING/U-box	-	no_errors	1009	22	2.13	697	483	40.90	49	37	43.02
INS-IGF2	0	genome.wustl.edu	36	11	2138649	2138649	+	Silent	SNP	G	G	A			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	16f3a01d-16b0-4405-bab7-1e22fdeb0b24	79b57153-6800-44e6-9f71-4e7323b04470	11	2138649	2138649	G	A	SNP	INS-IGF2	NM_001042376.1	human	genbank	54_36p	-1	reviewed	silent	c.129	p.C43	0.999	HMMPfam_Insulin,HMMSmart_SM00078,superfamily_Insulin-like	HMMPfam_Insulin,HMMSmart_SM00078,superfamily_Insulin-like	-	no_errors	46	0	0.00	42	51	54.84	NA	NA	NA
LIMA1	0	genome.wustl.edu	36	12	48902219	48902220	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	-	-	-	T	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	16f3a01d-16b0-4405-bab7-1e22fdeb0b24	79b57153-6800-44e6-9f71-4e7323b04470	12	48902219	48902220	-	T	INS	LIMA1	NM_016357.1	human	genbank	54_36p	-1	validated	frame_shift_ins	c.482_481	p.M161fs	0.998:0.974	NULL	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors	763	11	1.42	747	412	35.55	9	5	35.71
CEBPA	0	genome.wustl.edu	36	19	38484235	38484240	+	In_Frame_Del	DEL	TCCACG	TCCACG	-			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	TCCACG	TCCACG	TCCACG	-	TCCACG	TCCACG	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	16f3a01d-16b0-4405-bab7-1e22fdeb0b24	79b57153-6800-44e6-9f71-4e7323b04470	19	38484235	38484240	TCCACG	-	DEL	CEBPA	NM_004364.3	human	genbank	54_36p	-1	reviewed	in_frame_del	c.926_921	p.NVE307in_frame_delK	1.000:1.000:1.000:1.000:1.000:1.000	HMMSmart_BRLZ,HMMPfam_bZIP_2	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
CEBPA	0	genome.wustl.edu	36	19	38484959	38484960	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	TG	TG	TG	-	TG	TG	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	16f3a01d-16b0-4405-bab7-1e22fdeb0b24	79b57153-6800-44e6-9f71-4e7323b04470	19	38484959	38484960	TG	-	DEL	CEBPA	NM_004364.3	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.202_201	p.I68fs	1.000:1.000	NULL	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors	0	0	0.00	0	29	42.03	0	651	48.65