Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error NormalRefReads_WU NormalVarReads_WU NormalVAF_WU TumorRefReads_WU TumorVarReads_WU TumorVAF_WU RNARefReads_WU RNAVarReads_WU RNAVAF_WU ZBTB33 0 genome.wustl.edu 36 X 119271528 119271528 + Missense_Mutation SNP T T A TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 T T T A T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e X 119271528 119271528 T A SNP ZBTB33 NM_006777.3 human genbank 54_36p +1 validated missense c.230 p.I77N 1.000 HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers - no_errors 83 3 3.45 6 27 81.82 6 28 82.35 PHF6 0 genome.wustl.edu 36 X 133375518 133375518 + Splice_Site SNP G G T TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 G G G T G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e X 133375518 133375518 G T SNP PHF6 NM_001015877.1 human genbank 54_36p +1 reviewed splice_site c.586-1 e6-1 1.000 - - - no_errors 64 0 0.00 12 22 64.71 0 0 0.00 MYOM3 0 genome.wustl.edu 36 1 24305101 24305101 + Silent SNP G G A TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 1 24305101 24305101 G A SNP MYOM3 NM_152372.3 human genbank 54_36p -1 validated silent c.456 p.R152 0.929 superfamily_Immunoglobulin HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,PatternScan_EF_HAND_1,superfamily_Immunoglobulin - no_errors 46 0 0.00 22 10 31.25 NA NA NA CCDC24 0 genome.wustl.edu 36 1 44233906 44233906 + Missense_Mutation SNP C C A TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 C C C A C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 1 44233906 44233906 C A SNP CCDC24 NM_152499.1 human genbank 54_36p +1 provisional missense c.599 p.A200E 0.002 NULL NULL - no_errors 43 0 0.00 16 8 33.33 0 1 100.00 CRB1 0 genome.wustl.edu 36 1 195657028 195657028 + Missense_Mutation SNP G G A TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 1 195657028 195657028 G A SNP CRB1 NM_201253.1 human genbank 54_36p +1 reviewed missense c.1447 p.A483T 0.005 superfamily_Concanavalin A-like lectins/glucanases PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_C_TYPE_LECTIN_1,superfamily_EGF/Laminin - no_errors 182 2 1.08 48 17 26.15 NA NA NA TPO 0 genome.wustl.edu 36 2 1436476 1436476 + Missense_Mutation SNP C C A TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 C C C A C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 2 1436476 1436476 C A SNP TPO NM_000547.4 human genbank 54_36p +1 reviewed missense c.486 p.D162E 0.965 HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMSmart_SM00179,HMMPfam_An_peroxidase,HMMSmart_SM00181,superfamily_Heme-dependent peroxidases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_Complement control module/SCR domain,PatternScan_EGF_CA,PatternScan_PEROXIDASE_1,superfamily_EGF/Laminin - no_errors 28 0 0.00 10 8 44.44 NA NA NA APOB 0 genome.wustl.edu 36 2 21088903 21088903 + Missense_Mutation SNP C C T TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 2 21088903 21088903 C T SNP APOB NM_000384.2 human genbank 54_36p -1 reviewed missense c.4342 p.V1448I 0.001 NULL HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain - no_errors 207 3 1.42 68 49 41.88 NA NA NA UBR3 0 genome.wustl.edu 36 2 170626130 170626130 + Silent SNP C C T TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 2 170626130 170626130 C T SNP UBR3 NM_172070.3 human genbank 54_36p +1 validated silent c.1509 p.C503 1.000 NULL HMMPfam_zf-C3HC4,superfamily_RING/U-box - no_errors 135 2 1.45 26 10 27.78 14 14 50.00 LOC152845 0 genome.wustl.edu 36 4 85384652 85384652 + RNA SNP G G A TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 4 85384652 85384652 G A SNP LOC152845 XR_038721.1 human genbank 54_36p +1 model rna NULL NULL 1.000 - - - pseudogene 113 0 0.00 24 20 45.45 1 0 0.00 RIMS1 0 genome.wustl.edu 36 6 73024680 73024680 + Missense_Mutation SNP C C T TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 6 73024680 73024680 C T SNP RIMS1 NM_014989.3 human genbank 54_36p +1 validated missense c.2902 p.R968C 1.000 NULL HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger,PatternScan_GLYCOSYL_HYDROL_F1_1 - no_errors 93 0 0.00 20 7 25.93 NA NA NA DOCK5 0 genome.wustl.edu 36 8 25192027 25192027 + Missense_Mutation SNP G G A TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 8 25192027 25192027 G A SNP DOCK5 NM_024940.6 human genbank 54_36p +1 validated missense c.250 p.E84K 0.981 NULL HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain - no_errors 90 0 0.00 33 22 40.00 8 8 50.00 LOC100133234 0 genome.wustl.edu 36 8 56529812 56529812 + RNA SNP G G A TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 8 56529812 56529812 G A SNP LOC100133234 XR_038021.1 human genbank 54_36p -1 model rna NULL NULL 1.000 - - - pseudogene 26 0 0.00 12 4 25.00 1 0 0.00 SLCO5A1 0 genome.wustl.edu 36 8 70907326 70907326 + Missense_Mutation SNP C C T TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 8 70907326 70907326 C T SNP SLCO5A1 NM_030958.1 human genbank 54_36p -1 reviewed missense c.137 p.C46Y 0.999 NULL HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895 - no_errors 45 0 0.00 18 13 41.94 15 12 44.44 PLCE1 0 genome.wustl.edu 36 10 95781506 95781506 + Missense_Mutation SNP T T C TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 10 95781506 95781506 T C SNP PLCE1 NM_016341.3 human genbank 54_36p +1 validated missense c.713 p.M238T 0.287 NULL HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RA,HMMSmart_SM00314,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand - no_errors 187 3 1.56 54 31 36.47 NA NA NA NRAP 0 genome.wustl.edu 36 10 115347805 115347805 + Missense_Mutation SNP G G T TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 G G G T G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 10 115347805 115347805 G T SNP NRAP NM_198060.3 human genbank 54_36p -1 validated missense c.4245 p.D1415E 1.000 HMMSmart_SM00227 HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain) - no_errors 68 2 2.86 32 14 30.43 NA NA NA SCUBE2 0 genome.wustl.edu 36 11 9057523 9057523 + Silent SNP G G A TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 11 9057523 9057523 G A SNP SCUBE2 NM_020974.1 human genbank 54_36p -1 provisional silent c.366 p.D122 1.000 HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin - no_errors 153 0 0.00 36 23 38.98 NA NA NA CCDC67 0 genome.wustl.edu 36 11 92729775 92729775 + Missense_Mutation SNP G G A TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 11 92729775 92729775 G A SNP CCDC67 NM_181645.3 human genbank 54_36p +1 validated missense c.215 p.R72Q 0.999 NULL NULL - no_errors 151 1 0.65 24 20 45.45 NA NA NA AQP5 0 genome.wustl.edu 36 12 48643666 48643666 + Missense_Mutation SNP T T C TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 12 48643666 48643666 T C SNP AQP5 NM_001651.2 human genbank 54_36p +1 reviewed missense c.488 p.L163P 0.991 HMMPfam_MIP,superfamily_MIP HMMPfam_MIP,PatternScan_MIP,superfamily_MIP - no_errors 21 1 4.55 4 4 50.00 NA NA NA PABPC3 0 genome.wustl.edu 36 13 24568652 24568652 + Missense_Mutation SNP C C G TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 C C C G C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 13 24568652 24568652 C G SNP PABPC3 NM_030979.2 human genbank 54_36p +1 validated missense c.316 p.L106V 0.998 HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_PABP,HMMSmart_SM00517,superfamily_PABC (PABP) domain,HMMSmart_SM00361,superfamily_RNA-binding domain RBD - no_errors 105 1 0.94 57 10 14.93 NA NA NA FLT1 0 genome.wustl.edu 36 13 27778869 27778869 + Missense_Mutation SNP A A G TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 A A A G A A Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 13 27778869 27778869 A G SNP FLT1 NM_002019.3 human genbank 54_36p -1 validated missense c.3761 p.M1254T 0.733 NULL HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin - no_errors 113 2 1.74 43 43 50.00 NA NA NA PDS5B 0 genome.wustl.edu 36 13 32236670 32236670 + Missense_Mutation SNP A A G TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 A A A G A A Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 13 32236670 32236670 A G SNP PDS5B NM_015032.2 human genbank 54_36p +1 validated missense c.3562 p.T1188A 0.987 NULL HMMPfam_HEAT,superfamily_ARM repeat,HMMPfam_AT_hook - no_errors 159 1 0.62 52 10 16.13 71 24 25.26 CEBPE 0 genome.wustl.edu 36 14 22656548 22656548 + Silent SNP C C A TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 C C C A C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 14 22656548 22656548 C A SNP CEBPE NM_001805.2 human genbank 54_36p -1 reviewed silent c.834 p.G278 0.996 NULL HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2 - no_errors 92 0 0.00 32 36 52.94 NA NA NA GZMB 0 genome.wustl.edu 36 14 24171052 24171052 + Missense_Mutation SNP G G A TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 14 24171052 24171052 G A SNP GZMB NM_004131.4 human genbank 54_36p -1 reviewed missense c.452 p.A151V 0.000 HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER - no_errors 70 0 0.00 17 18 50.00 16 3 15.79 CASC5 0 genome.wustl.edu 36 15 38703884 38703884 + Missense_Mutation SNP G G C TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 G G G C G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 15 38703884 38703884 G C SNP CASC5 NM_170589.3 human genbank 54_36p +1 validated missense c.4208 p.G1403A 0.044 NULL NULL - no_errors 99 1 1.00 21 18 46.15 30 12 28.57 IDH2 0 genome.wustl.edu 36 15 88432938 88432938 + Missense_Mutation SNP C C T rs121913502 TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 15 88432938 88432938 C T SNP IDH2 NM_002168.2 human genbank 54_36p -1 reviewed missense c.419 p.R140Q 1.000 HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like - no_errors 75 1 1.32 22 16 42.11 82 80 49.08 NUP93 0 genome.wustl.edu 36 16 55389922 55389922 + Missense_Mutation SNP C C A TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 C C C A C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 16 55389922 55389922 C A SNP NUP93 NM_014669.3 human genbank 54_36p +1 validated missense c.331 p.L111M 1.000 NULL HMMPfam_Nic96 - no_errors 189 0 0.00 68 9 11.69 25 8 24.24 RTN4RL1 0 genome.wustl.edu 36 17 1787436 1787436 + Missense_Mutation SNP C C T TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 17 1787436 1787436 C T SNP RTN4RL1 NM_178568.2 human genbank 54_36p -1 validated missense c.430 p.V144I 1.000 HMMSmart_SM00369,superfamily_L domain-like HMMPfam_LRRNT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like - no_errors 23 0 0.00 18 10 34.48 NA NA NA ZNF133 0 genome.wustl.edu 36 20 18245128 18245128 + Missense_Mutation SNP T T G TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 T T T G T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 20 18245128 18245128 T G SNP ZNF133 NM_001083330.1 human genbank 54_36p +1 validated missense c.1630 p.S544A 0.980 superfamily_SSF57667 HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 - no_errors 125 1 0.79 26 20 43.48 0 1 100.00 RUNX1 0 genome.wustl.edu 36 21 35153652 35153652 + Missense_Mutation SNP C C T rs74315450 TCGA-AB-2959-03A-01W-0733-08 TCGA-AB-2959-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 8c783e8d-d1d7-41cc-9b4d-e651f11d8fea 5f663626-659e-41d2-a1f5-934bb2c3ad8e 21 35153652 35153652 C T SNP RUNX1 NM_001754.2 human genbank 54_36p -1 reviewed missense c.602 p.R201Q 1.000 superfamily_p53-like transcription factors,HMMPfam_Runt superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI - no_errors 102 0 0.00 6 40 86.96 9 825 97.40