Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
GPR101	0	genome.wustl.edu	36	X	135941370	135941370	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	X	135941370	135941370	C	T	SNP	GPR101	NM_054021.1	human	genbank	54_36p	-1	provisional	missense	c.130	p.A44T	0.001	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	497	36	6.72	53	38	41.30	NA	NA	NA
NRAS	0	genome.wustl.edu	36	1	115060270	115060270	+	Missense_Mutation	SNP	C	C	T	rs121913237		TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	1	115060270	115060270	C	T	SNP	NRAS	NM_002524.3	human	genbank	54_36p	-1	reviewed	missense	c.35	p.G12D	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	207	1	0.48	266	35	11.55	43	10	18.18
TRIM45	0	genome.wustl.edu	36	1	117464866	117464866	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	1	117464866	117464866	C	T	SNP	TRIM45	NM_025188.1	human	genbank	54_36p	-1	reviewed	missense	c.481	p.A161T	1.000	HMMPfam_zf-B_box,HMMSmart_SM00336	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00557,HMMSmart_SM00184,HMMSmart_SM00502,superfamily_E set domains,HMMPfam_Filamin,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors	195	16	7.58	232	182	43.44	7	4	36.36
ADCY10	0	genome.wustl.edu	36	1	166139804	166139804	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	1	166139804	166139804	T	A	SNP	ADCY10	NM_018417.3	human	genbank	54_36p	-1	validated	missense	c.198	p.R66S	1.000	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain,superfamily_TPR-like	-	no_errors	236	16	6.35	158	109	40.07	NA	NA	NA
FAT1	0	genome.wustl.edu	36	4	187821731	187821731	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	4	187821731	187821731	C	G	SNP	FAT1	NM_005245.3	human	genbank	54_36p	-1	reviewed	missense	c.3296	p.R1099P	0.989	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors	119	8	6.30	108	70	39.11	NA	NA	NA
C8orf80	0	genome.wustl.edu	36	8	27978130	27978130	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	8	27978130	27978130	C	T	SNP	C8orf80	NM_001010906.1	human	genbank	54_36p	-1	predicted	missense	c.749	p.R250H	0.973	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	176	6	3.30	110	24	17.91	3	0	0.00
GLIS3	0	genome.wustl.edu	36	9	3818379	3818379	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	9	3818379	3818379	G	A	SNP	GLIS3	NM_001042413.1	human	genbank	54_36p	-1	reviewed	missense	c.2686	p.L896F	0.997	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	157	9	5.42	132	86	39.27	NA	NA	NA
DSCAML1	0	genome.wustl.edu	36	11	116806856	116806856	+	Silent	SNP	G	G	A			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	11	116806856	116806856	G	A	SNP	DSCAML1	NM_020693.2	human	genbank	54_36p	-1	provisional	silent	c.5658	p.H1886	1.000	NULL	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors	453	59	11.52	56	52	47.71	1	0	0.00
GRIK4	0	genome.wustl.edu	36	11	120207797	120207797	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	11	120207797	120207797	C	T	SNP	GRIK4	NM_014619.2	human	genbank	54_36p	+1	reviewed	missense	c.538	p.R180W	1.000	HMMPfam_ANF_receptor,superfamily_SSF53822	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors	64	1	1.54	63	13	16.88	NA	NA	NA
MDM2	0	genome.wustl.edu	36	12	67516784	67516784	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	A	A	A	C	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	12	67516784	67516784	A	C	SNP	MDM2	NM_002392.1	human	genbank	54_36p	+1	reviewed	missense	c.906	p.E302D	1.000	NULL	HMMPfam_zf-RanBP,PatternScan_ZF_RANBP2_1,HMMPfam_SWIB,superfamily_SWIB/MDM2 domain,superfamily_RING/U-box	-	no_errors	153	1	0.65	236	60	20.20	25	0	0.00
C15orf60	0	genome.wustl.edu	36	15	71522583	71522583	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	15	71522583	71522583	G	A	SNP	C15orf60	NM_001042367.1	human	genbank	54_36p	+1	predicted	missense	c.4	p.A2T	0.997	NULL	NULL	-	no_errors	84	5	5.62	63	51	44.74	NA	NA	NA
TP53	0	genome.wustl.edu	36	17	7517806	7517806	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	17	7517806	7517806	T	C	SNP	TP53	NM_000546.4	human	genbank	54_36p	-1	reviewed	missense	c.857	p.E286G	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors	276	28	9.21	38	175	81.78	24	228	90.12
PRX	0	genome.wustl.edu	36	19	45594838	45594838	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	19	45594838	45594838	T	C	SNP	PRX	NM_181882.2	human	genbank	54_36p	-1	reviewed	missense	c.1261	p.K421E	0.996	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors	74	8	9.64	63	50	43.86	3	3	50.00
EFCAB6	0	genome.wustl.edu	36	22	42317297	42317297	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	22	42317297	42317297	G	T	SNP	EFCAB6	NM_022785.2	human	genbank	54_36p	-1	validated	missense	c.3022	p.L1008M	0.478	superfamily_EF-hand	HMMSmart_SM00054,HMMPfam_DUF1880,PatternScan_EF_HAND_1,superfamily_EF-hand	-	no_errors	227	3	1.30	240	70	22.36	NA	NA	NA
ENSG00000200463	0	genome.wustl.edu	36	17	8017594	8017595	+	RNA	INS	-	-	GGA			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	-	-	-	GGA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	17	8017594	8017595	-	GGA	INS	ENSG00000200463	ENST00000363593	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0.688:0.440	-	-	-	no_errors	220	4	1.79	105	21	16.67	19	0	0.00
CEBPA	0	genome.wustl.edu	36	19	38484735	38484736	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	CC	CC	CC	-	CC	CC	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b522ecb6-9d9a-4fbf-806e-5a20aeed9d06	0f4c32e9-65f3-464b-aa29-65e10407a75e	19	38484735	38484736	CC	-	DEL	CEBPA	NM_004364.3	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.426_425	p.R142fs	0.999:1.000	NULL	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors	0	0	0.00	0	0	0.00	0	114	51.35