Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MT-ND5	0	genome.wustl.edu	36	MT	13692	13692	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f2dd9aa3-dbe1-49ae-bc4f-ba2574759654	57e0ec3e-72a6-4f13-8af7-93642db05dcf	MT	13692	13692	A	G	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	missense	c.1355	p.N452S	NULL	HMMPfam_NADH5_C	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors	1061	61	5.31	36	215	84.65	NA	NA	NA
TCEAL3	0	genome.wustl.edu	36	X	102751098	102751098	+	Silent	SNP	A	A	G			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f2dd9aa3-dbe1-49ae-bc4f-ba2574759654	57e0ec3e-72a6-4f13-8af7-93642db05dcf	X	102751098	102751098	A	G	SNP	TCEAL3	NM_001006933.1	human	genbank	54_36p	+1	reviewed	silent	c.450	p.Q150	1.000	HMMPfam_TFA	HMMPfam_TFA	-	no_errors	206	8	3.67	120	38	24.05	14	0	0.00
COL16A1	0	genome.wustl.edu	36	1	31917764	31917764	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f2dd9aa3-dbe1-49ae-bc4f-ba2574759654	57e0ec3e-72a6-4f13-8af7-93642db05dcf	1	31917764	31917764	C	T	SNP	COL16A1	ENST00000373668	human	ensembl	54_36p	-1	known	nonsense	c.2780	p.W927*	0.002	NULL	HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl	-	no_errors	120	4	3.20	41	20	32.79	NA	NA	NA
LOC728247	0	genome.wustl.edu	36	3	199332028	199332028	+	RNA	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f2dd9aa3-dbe1-49ae-bc4f-ba2574759654	57e0ec3e-72a6-4f13-8af7-93642db05dcf	3	199332028	199332028	C	T	SNP	LOC728247	XR_015241.2	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.431	-	-	-	pseudogene	69	1	1.43	30	11	26.83	NA	NA	NA
PKIB	0	genome.wustl.edu	36	6	123080792	123080792	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f2dd9aa3-dbe1-49ae-bc4f-ba2574759654	57e0ec3e-72a6-4f13-8af7-93642db05dcf	6	123080792	123080792	C	T	SNP	PKIB	NM_032471.4	human	genbank	54_36p	+1	reviewed	missense	c.154	p.L52F	0.042	HMMPfam_PKI	HMMPfam_PKI	-	no_errors	143	4	2.72	61	32	34.41	NA	NA	NA
TNRC18	0	genome.wustl.edu	36	7	62670184	62670184	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f2dd9aa3-dbe1-49ae-bc4f-ba2574759654	57e0ec3e-72a6-4f13-8af7-93642db05dcf	7	62670184	62670184	G	A	SNP	TNRC18	XM_376618.5	human	genbank	54_36p	-1	model	missense	c.1855	p.R619W	1.000	NULL	NULL	-	pseudogene	92	6	6.12	36	16	30.77	NA	NA	NA
LRRC4	0	genome.wustl.edu	36	7	127456409	127456409	+	Silent	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f2dd9aa3-dbe1-49ae-bc4f-ba2574759654	57e0ec3e-72a6-4f13-8af7-93642db05dcf	7	127456409	127456409	G	A	SNP	LRRC4	NM_022143.4	human	genbank	54_36p	-1	validated	silent	c.1521	p.P507	0.948	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors	155	19	10.86	14	18	56.25	2	42	95.45
TP53	0	genome.wustl.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	A	A	A	C	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f2dd9aa3-dbe1-49ae-bc4f-ba2574759654	57e0ec3e-72a6-4f13-8af7-93642db05dcf	17	7518990	7518990	A	C	SNP	TP53	NM_000546.4	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195S	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors	430	27	5.86	53	15	22.06	4	91	95.79
SYNJ1	0	genome.wustl.edu	36	21	32989378	32989378	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f2dd9aa3-dbe1-49ae-bc4f-ba2574759654	57e0ec3e-72a6-4f13-8af7-93642db05dcf	21	32989378	32989378	T	C	SNP	SYNJ1	NM_003895.2	human	genbank	54_36p	-1	validated	missense	c.565	p.I189V	1.000	HMMPfam_Syja_N	HMMSmart_SM00128,HMMPfam_Syja_N,HMMPfam_Exo_endo_phos,superfamily_DNase I-like,HMMPfam_DUF1866,superfamily_RNA-binding domain RBD	-	no_errors	262	32	10.77	52	35	39.77	20	27	57.45
uc001vvs.1	0	genome.wustl.edu	36	14	18961212	18961213	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	TG	TG	TG	-	TG	TG	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f2dd9aa3-dbe1-49ae-bc4f-ba2574759654	57e0ec3e-72a6-4f13-8af7-93642db05dcf	14	18961212	18961213	TG	-	DEL	uc001vvs.1	ENST00000383038	human	ensembl	54_36p	-1	known	frame_shift_del	c.233_232	p.Q78fs	0.000:0.000	NULL	NULL	-	no_errors	0	2	0.41	0	2	14.29	0	8	19.05