Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error NormalRefReads_WU NormalVarReads_WU NormalVAF_WU TumorRefReads_WU TumorVarReads_WU TumorVAF_WU RNARefReads_WU RNAVarReads_WU RNAVAF_WU HDGF 0 genome.wustl.edu 36 1 154980220 154980220 + Silent SNP C C T TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 1 154980220 154980220 C T SNP HDGF NM_004494.1 human genbank 54_36p -1 reviewed silent c.564 p.E188 0.286 NULL HMMPfam_PWWP,HMMSmart_PWWP,superfamily_SSF63748 - no_errors 254 0 0.00 110 32 22.07 268 330 55.18 ROBO2 0 genome.wustl.edu 36 3 76069431 76069431 + Missense_Mutation SNP G G A TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 3 76069431 76069431 G A SNP ROBO2 ENST00000403211 human ensembl 54_36p +1 known missense c.97 p.G33R 0.742 NULL HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726 - no_stop_codon:overly_large_intron 161 0 0.00 291 59 16.86 NA NA NA PIK3CB 0 genome.wustl.edu 36 3 139957479 139957479 + Missense_Mutation SNP C C T TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 3 139957479 139957479 C T SNP PIK3CB NM_006219.1 human genbank 54_36p -1 provisional missense c.204 p.M68I 1.000 HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236 - no_errors 78 0 0.00 104 40 27.59 106 103 49.28 SORBS2 0 genome.wustl.edu 36 4 186781669 186781669 + Silent SNP G G A TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 4 186781669 186781669 G A SNP SORBS2 NM_021069.1 human genbank 54_36p -1 reviewed silent c.1896 p.S632 0.811 NULL HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Sorb,HMMSmart_SM00459,PatternScan_ZINC_FINGER_C2H2_1 - no_errors 42 0 0.00 38 14 26.92 0 0 0.00 VARS2 0 genome.wustl.edu 36 6 30995886 30995886 + Missense_Mutation SNP G G A TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 6 30995886 30995886 G A SNP VARS2 NM_020442.3 human genbank 54_36p +1 provisional missense c.1207 p.E403K 0.997 HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Nucleotidylyl transferase PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1,superfamily_Nucleotidylyl transferase - no_errors 75 0 0.00 56 19 25.33 13 4 23.53 TTBK1 0 genome.wustl.edu 36 6 43331348 43331348 + Missense_Mutation SNP G G T TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 G G G T G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 6 43331348 43331348 G T SNP TTBK1 NM_032538.1 human genbank 54_36p +1 validated missense c.723 p.K241N 1.000 HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase - no_errors 97 0 0.00 38 10 20.83 NA NA NA LOC727842 0 genome.wustl.edu 36 6 58554097 58554097 + RNA SNP G G T TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 G G G T G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 6 58554097 58554097 G T SNP LOC727842 XR_015140.2 human genbank 54_36p -1 model rna NULL NULL 1.000 - - - pseudogene 93 0 0.00 69 27 27.84 NA NA NA CCZ1 0 genome.wustl.edu 36 7 5908853 5908853 + Silent SNP C C T TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 7 5908853 5908853 C T SNP C7orf28A NM_015622.5 human genbank 54_36p +1 validated silent c.474 p.D158 1.000 HMMPfam_DUF2049 HMMPfam_DUF2049 - no_errors 37 0 0.00 72 20 21.74 13 1 7.14 CUL1 0 genome.wustl.edu 36 7 148088455 148088455 + Missense_Mutation SNP G G T TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 G G G T G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 7 148088455 148088455 G T SNP CUL1 NM_003592.2 human genbank 54_36p +1 validated missense c.723 p.E241D 0.997 HMMPfam_Cullin,superfamily_Cullin repeat "HMMPfam_Cullin,PatternScan_CULLIN_1,HMMSmart_SM00182,superfamily_Cullin homology domain,superfamily_Cullin repeat,HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain" - no_errors 53 0 0.00 49 27 35.53 14 11 44.00 DLC1 0 genome.wustl.edu 36 8 12997037 12997037 + Missense_Mutation SNP G G A TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 8 12997037 12997037 G A SNP DLC1 NM_182643.3 human genbank 54_36p -1 reviewed missense c.3256 p.R1086C 1.000 superfamily_GTPase activation domain GAP HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_START,HMMSmart_SM00234,superfamily_GTPase activation domain GAP,HMMPfam_SAM_2,superfamily_Bet v1-like - no_errors 107 0 0.00 51 26 33.77 109 95 46.34 CAMSAP1 0 genome.wustl.edu 36 9 137854321 137854321 + Silent SNP T T C TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 9 137854321 137854321 T C SNP CAMSAP1 NM_015447.3 human genbank 54_36p -1 validated silent c.1173 p.P391 0.000 NULL superfamily_PRC-barrel domain,HMMPfam_DUF1781 - no_errors 22 0 0.00 37 14 26.92 13 4 23.53 SIDT2 0 genome.wustl.edu 36 11 116569108 116569108 + Missense_Mutation SNP A A G TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 A A A G A A Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 11 116569108 116569108 A G SNP SIDT2 NM_001040455.1 human genbank 54_36p +1 validated missense c.2135 p.N712S 1.000 NULL NULL - no_errors 44 0 0.00 40 13 24.07 60 24 28.57 OR8B12 0 genome.wustl.edu 36 11 123917988 123917988 + Missense_Mutation SNP T T C TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 11 123917988 123917988 T C SNP OR8B12 NM_001005195.1 human genbank 54_36p -1 provisional missense c.773 p.Y258C 0.223 HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like - no_errors 67 0 0.00 96 27 21.77 NA NA NA TUBA3C 0 genome.wustl.edu 36 13 18649444 18649444 + Missense_Mutation SNP G G T TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 G G G T G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 13 18649444 18649444 G T SNP TUBA3C NM_006001.1 human genbank 54_36p -1 reviewed missense c.679 p.L227I 1.000 HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like - no_errors 58 0 0.00 50 13 20.63 NA NA NA NRXN3 0 genome.wustl.edu 36 14 79341275 79341275 + Missense_Mutation SNP A A G TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 A A A G A A Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 14 79341275 79341275 A G SNP NRXN3 NM_004796.1 human genbank 54_36p +1 reviewed missense c.2873 p.E958G 0.998 NULL PatternScan_ASX_HYDROXYL,HMMSmart_LamG,HMMSmart_4.1m,HMMPfam_EGF,HMMSmart_EGF,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 - no_errors 236 1 0.42 194 88 31.21 2 0 0.00 CASC4 0 genome.wustl.edu 36 15 42482414 42482414 + Silent SNP G G A TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 15 42482414 42482414 G A SNP CASC4 NM_138423.2 human genbank 54_36p +1 reviewed silent c.1110 p.P370 1.000 NULL NULL - no_errors 53 0 0.00 67 32 31.68 11 22 66.67 EDC4 0 genome.wustl.edu 36 16 66469944 66469944 + Missense_Mutation SNP C C T TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 16 66469944 66469944 C T SNP EDC4 NM_014329.3 human genbank 54_36p +1 validated missense c.1093 p.P365S 1.000 HMMSmart_SM00320,superfamily_WD40 repeat-like HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 - no_errors 125 0 0.00 52 15 22.39 74 45 37.82 TP53 0 genome.wustl.edu 36 17 7519119 7519119 + Missense_Mutation SNP T T C TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 17 7519119 7519119 T C SNP TP53 NM_000546.4 human genbank 54_36p -1 reviewed missense c.536 p.H179R 0.999 superfamily_p53-like transcription factors,HMMPfam_P53 PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD - no_errors 65 0 0.00 62 91 59.09 28 160 85.11 CD320 0 genome.wustl.edu 36 19 8275962 8275962 + Missense_Mutation SNP C C G TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 C C C G C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 19 8275962 8275962 C G SNP CD320 NM_016579.2 human genbank 54_36p -1 validated missense c.221 p.C74S 0.974 HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich - no_errors 35 0 0.00 21 29 58.00 11 45 80.36 TMEM205 0 genome.wustl.edu 36 19 11317305 11317305 + Splice_Site SNP C C G TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 C C C G C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 19 11317305 11317305 C G SNP TMEM205 ENST00000222124 human ensembl 54_36p -1 known splice_site c.1-1 e1-1 0.166 - - - no_errors 115 0 0.00 214 25 10.42 46 10 17.86 PRKCG 0 genome.wustl.edu 36 19 59099782 59099782 + Missense_Mutation SNP C C T TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 19 59099782 59099782 C T SNP PRKCG NM_002739.3 human genbank 54_36p +1 reviewed missense c.1738 p.R580W 0.993 HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase HMMPfam_C2,HMMSmart_C2,HMMSmart_S_TK_X,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_C2_CaLB,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_SSF57889 - no_errors 115 0 0.00 74 19 20.43 NA NA NA DNMT3A 0 genome.wustl.edu 36 2 25324035 25324035 + Frame_Shift_Del DEL T T - TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 T T T - T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 2 25324035 25324035 T - DEL DNMT3A NM_022552.3 human genbank 54_36p -1 reviewed frame_shift_del c.943 p.M315fs 1.000 HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT - no_errors 31 0 0.00 26 8 23.53 7 1 12.50 ZNF827 0 genome.wustl.edu 36 4 147026748 147026748 + Frame_Shift_Del DEL G G - TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 G G G - G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 4 147026748 147026748 G - DEL ZNF827 NM_178835.3 human genbank 54_36p -1 validated frame_shift_del c.1279 p.Q427fs 1.000 superfamily_SSF57667 HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 - no_errors 97 0 0.00 82 33 28.21 10 0 0.00 TP53 0 genome.wustl.edu 36 17 7514728 7514728 + Frame_Shift_Del DEL G G - TCGA-AB-2938-03A-01W-0732-08 TCGA-AB-2938-11A-01W-0732-08 G G G - G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d0b06a0b-9181-44ad-ad12-c9d1ca414e29 f82130cf-0cf8-40b7-a102-d1238eca7f06 17 7514728 7514728 G - DEL TP53 NM_000546.4 human genbank 54_36p -1 reviewed frame_shift_del c.1024 p.R342fs 0.397 HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD - no_errors 117 0 0.00 170 27 13.30 94 1 1.04