Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MT-CYB	0	genome.wustl.edu	36	MT	14767	14767	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	MT	14767	14767	T	C	SNP	MT-CYB	ENST00000361789	human	ensembl	54_36p	+1	known	missense	c.20	p.I7T	NULL	superfamily_Transmembr_di-haem_cytochrome	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region	3010	22	0.72	1372	171	11.00	NA	NA	NA
CD1B	0	genome.wustl.edu	36	1	156567469	156567469	+	Silent	SNP	C	C	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	1	156567469	156567469	C	T	SNP	CD1B	NM_001764.2	human	genbank	54_36p	-1	reviewed	silent	c.69	p.Q23	0.003	NULL	HMMPfam_MHC_I,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors	296	7	2.31	148	83	35.47	0	0	0.00
OR2T10	0	genome.wustl.edu	36	1	246822922	246822922	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	1	246822922	246822922	G	T	SNP	OR2T10	NM_001004693.1	human	genbank	54_36p	-1	provisional	nonsense	c.771	p.Y257*	0.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	107	3	2.73	153	95	38.00	NA	NA	NA
DNMT3A	0	genome.wustl.edu	36	2	25310747	25310747	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	2	25310747	25310747	G	A	SNP	DNMT3A	NM_022552.3	human	genbank	54_36p	-1	reviewed	missense	c.2644	p.R882C	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors	93	1	1.06	64	28	30.11	16	9	34.62
STK39	0	genome.wustl.edu	36	2	168705498	168705498	+	Silent	SNP	C	C	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	2	168705498	168705498	C	T	SNP	STK39	NM_013233.2	human	genbank	54_36p	-1	reviewed	silent	c.645	p.A215	0.986	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors	108	0	0.00	138	77	35.81	15	20	57.14
BTD	0	genome.wustl.edu	36	3	15661430	15661430	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	3	15661430	15661430	G	A	SNP	BTD	NM_000060.2	human	genbank	54_36p	+1	reviewed	missense	c.1063	p.D355N	0.003	NULL	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase	-	no_errors	97	2	2.02	105	61	36.31	15	5	25.00
STC2	0	genome.wustl.edu	36	5	172677648	172677648	+	Silent	SNP	G	G	A			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	5	172677648	172677648	G	A	SNP	STC2	NM_003714.2	human	genbank	54_36p	-1	reviewed	silent	c.717	p.H239	0.003	HMMPfam_Stanniocalcin	HMMPfam_Stanniocalcin	-	no_errors	38	1	2.56	24	19	43.18	NA	NA	NA
MYB	0	genome.wustl.edu	36	6	135552652	135552652	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	6	135552652	135552652	T	C	SNP	MYB	NM_005375.1	human	genbank	54_36p	+1	validated	missense	c.244	p.W82R	1.000	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Wos2,HMMPfam_Myb_DNA-binding,HMMPfam_Cmyb_C	-	no_errors	94	0	0.00	119	14	10.45	52	13	20.00
LOC100131447	0	genome.wustl.edu	36	7	48857942	48857942	+	RNA	SNP	G	G	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	7	48857942	48857942	G	T	SNP	LOC100131447	XR_036885.1	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene	72	1	1.37	141	39	21.55	NA	NA	NA
CSMD1	0	genome.wustl.edu	36	8	2953569	2953569	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	8	2953569	2953569	G	T	SNP	CSMD1	NM_033225.4	human	genbank	54_36p	-1	validated	missense	c.6721	p.L2241I	1.000	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	115	2	1.71	113	86	42.79	NA	NA	NA
ARL3	0	genome.wustl.edu	36	10	104439667	104439667	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	10	104439667	104439667	G	T	SNP	ARL3	NM_004311.2	human	genbank	54_36p	-1	reviewed	missense	c.288	p.D96E	1.000	HMMSmart_ARF,HMMPfam_Arf,superfamily_SSF52540	HMMSmart_ARF,PatternScan_ARF,HMMPfam_Arf,superfamily_SSF52540	-	no_errors	103	1	0.96	103	59	36.20	9	11	55.00
TTC40	0	genome.wustl.edu	36	10	134521111	134521111	+	Silent	SNP	G	G	A			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	10	134521111	134521111	G	A	SNP	C10orf92	ENST00000263170	human	ensembl	54_36p	-1	known	silent	c.30	p.S10	0.001	NULL	NULL	-	no_errors	34	1	2.78	8	15	65.22	NA	NA	NA
KCNA4	0	genome.wustl.edu	36	11	29989637	29989637	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	11	29989637	29989637	G	A	SNP	KCNA4	NM_002233.2	human	genbank	54_36p	-1	reviewed	missense	c.1165	p.R389C	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,HMMPfam_K_channel_TID,superfamily_Voltage-gated potassium channels	-	no_errors	479	19	3.82	154	160	50.63	NA	NA	NA
TRIP4	0	genome.wustl.edu	36	15	62473369	62473369	+	Splice_Site	SNP	T	T	C			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	15	62473369	62473369	T	C	SNP	TRIP4	NM_016213.3	human	genbank	54_36p	+1	validated	splice_site	c.271+2	e2+2	1.000	-	-	-	no_errors	128	2	1.53	121	69	35.94	0	7	100.00
PHACTR1	0	genome.wustl.edu	36	6	13314113	13314114	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2916-03A-01W-0732-08	TCGA-AB-2916-11A-01W-0732-08	-	-	-	G	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	40754d09-f57c-442e-bb13-35f5793c381a	4f994b34-a13a-4755-b0d4-2847b1c41e25	6	13314113	13314114	-	G	INS	PHACTR1	NM_030948.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.752_753	p.P254fs	0.638:0.521	NULL	HMMPfam_RPEL,HMMSmart_SM00707	-	no_errors	12	0	0.00	45	4	8.16	2	0	0.00