Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error NormalRefReads_WU NormalVarReads_WU NormalVAF_WU TumorRefReads_WU TumorVarReads_WU TumorVAF_WU RNARefReads_WU RNAVarReads_WU RNAVAF_WU LOC642546 0 genome.wustl.edu 36 X 79714774 79714774 + RNA SNP C C T TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 X 79714774 79714774 C T SNP LOC642546 XR_038841.1 human genbank 54_36p -1 model rna NULL NULL 1.000 - - - pseudogene 58 4 6.45 21 65 75.58 14 0 0.00 RPS6KA6 0 genome.wustl.edu 36 X 83206679 83206679 + Missense_Mutation SNP G G A TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 X 83206679 83206679 G A SNP RPS6KA6 NM_014496.2 human genbank 54_36p -1 provisional missense c.2068 p.P690S 1.000 superfamily_Protein kinase-like (PK-like) PatternScan_SERPIN,HMMSmart_SM00133,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C - no_errors 94 1 1.05 69 16 18.82 NA NA NA BCAN 0 genome.wustl.edu 36 1 154883956 154883956 + Missense_Mutation SNP C C T TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 1 154883956 154883956 C T SNP BCAN NM_021948.3 human genbank 54_36p +1 validated missense c.499 p.R167C 1.000 HMMPfam_Xlink,HMMSmart_SM00445,superfamily_C-type lectin-like HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,HMMPfam_Lectin_C,HMMSmart_SM00034,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_V-set,superfamily_Complement control module/SCR domain,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1,superfamily_Immunoglobulin,superfamily_EGF/Laminin - no_errors 121 2 1.63 146 113 43.63 NA NA NA ADSS 0 genome.wustl.edu 36 1 242647552 242647552 + Splice_Site SNP C C T TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 1 242647552 242647552 C T SNP ADSS NM_001126.2 human genbank 54_36p -1 reviewed splice_site c.1070+1 e10+1 1.000 - - - no_errors 92 0 0.00 87 41 32.03 8 3 27.27 DNMT3A 0 genome.wustl.edu 36 2 25316812 25316812 + Missense_Mutation SNP G G A TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 2 25316812 25316812 G A SNP DNMT3A NM_022552.3 human genbank 54_36p -1 reviewed missense c.2185 p.R729W 1.000 HMMPfam_DNA_methylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT - no_errors 19 0 0.00 27 26 49.06 15 10 40.00 ZNF638 0 genome.wustl.edu 36 2 71507731 71507731 + Missense_Mutation SNP G G A TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 2 71507731 71507731 G A SNP ZNF638 NM_001014972.1 human genbank 54_36p +1 reviewed missense c.5224 p.D1742N 1.000 NULL HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_RNA-binding domain RBD - no_errors 192 1 0.52 136 62 31.31 41 41 50.00 SCN3A 0 genome.wustl.edu 36 2 165711731 165711731 + Missense_Mutation SNP C C G TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 C C C G C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 2 165711731 165711731 C G SNP SCN3A NM_006922.1 human genbank 54_36p -1 reviewed missense c.1435 p.G479R 0.985 NULL HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_SSF81324 - no_errors 88 4 4.35 97 66 40.49 NA NA NA POC1A 0 genome.wustl.edu 36 3 52147344 52147344 + Missense_Mutation SNP C C T TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 3 52147344 52147344 C T SNP WDR51A NM_015426.3 human genbank 54_36p -1 provisional missense c.694 p.V232M 0.999 HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40 - no_errors 121 2 1.63 131 108 45.19 13 12 48.00 ILDR1 0 genome.wustl.edu 36 3 123208591 123208591 + Missense_Mutation SNP C C T TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 3 123208591 123208591 C T SNP ILDR1 NM_175924.2 human genbank 54_36p -1 provisional missense c.166 p.V56M 0.997 HMMSmart_IG,superfamily_SSF48726 HMMSmart_IG,HMMPfam_LSR,superfamily_SSF48726 - no_errors 122 2 1.61 153 98 39.04 0 1 100.00 KDR 0 genome.wustl.edu 36 4 55659711 55659711 + Silent SNP C C T TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 4 55659711 55659711 C T SNP KDR NM_002253.2 human genbank 54_36p -1 validated silent c.2283 p.T761 0.682 NULL HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726 - no_errors 84 0 0.00 95 52 35.37 NA NA NA LOC100128322 0 genome.wustl.edu 36 6 132189027 132189027 + RNA SNP C C T TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 6 132189027 132189027 C T SNP LOC100128322 XR_039280.1 human genbank 54_36p -1 model rna NULL NULL 0.998 - - - pseudogene 49 1 2.00 57 46 44.66 0 0 0.00 DUSP26 0 genome.wustl.edu 36 8 33570685 33570685 + Missense_Mutation SNP C C A TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 C C C A C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 8 33570685 33570685 C A SNP DUSP26 NM_024025.1 human genbank 54_36p -1 provisional missense c.344 p.G115V 1.000 HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II - no_errors 106 0 0.00 155 78 33.33 NA NA NA KCNU1 0 genome.wustl.edu 36 8 36761105 36761105 + Nonsense_Mutation SNP C C T TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 8 36761105 36761105 C T SNP KCNU1 NM_001031836.2 human genbank 54_36p +1 validated nonsense c.19 p.R7* 0.000 NULL HMMPfam_BK_channel_a,HMMPfam_Ion_trans,superfamily_NAD(P)-bd,superfamily_SSF81324 - no_errors 112 1 0.88 157 73 31.74 NA NA NA KHDRBS3 0 genome.wustl.edu 36 8 136624127 136624127 + Missense_Mutation SNP C C T TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 8 136624127 136624127 C T SNP KHDRBS3 NM_006558.1 human genbank 54_36p +1 provisional missense c.256 p.R86C 1.000 HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I) HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I) - no_errors 124 1 0.80 206 66 24.26 NA NA NA SMC3 0 genome.wustl.edu 36 10 112333981 112333981 + Missense_Mutation SNP G G A TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 10 112333981 112333981 G A SNP SMC3 NM_005445.3 human genbank 54_36p +1 reviewed missense c.1142 p.R381Q 1.000 HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_BAG domain - no_errors 102 2 1.92 120 64 34.78 51 34 40.00 DOCK1 0 genome.wustl.edu 36 10 128730879 128730879 + Missense_Mutation SNP T T A TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 T T T A T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 10 128730879 128730879 T A SNP DOCK1 ENST00000398025 human ensembl 54_36p +1 known missense c.1948 p.F650I 1.000 NULL HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,superfamily_Cytochrome_c - no_errors 138 0 0.00 107 71 39.89 3 10 76.92 PUS1 0 genome.wustl.edu 36 12 130991817 130991817 + Missense_Mutation SNP A A T TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 A A A T A A Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 12 130991817 130991817 A T SNP PUS1 NM_025215.1 human genbank 54_36p +1 validated missense c.572 p.N191I 1.000 HMMPfam_PseudoU_synth_1,superfamily_Pseudouridine synthase HMMPfam_PseudoU_synth_1,superfamily_Pseudouridine synthase - no_errors 38 0 0.00 54 45 45.45 11 14 56.00 CCDC33 0 genome.wustl.edu 36 15 72323519 72323519 + Silent SNP C C T TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 15 72323519 72323519 C T SNP CCDC33 NM_025055.3 human genbank 54_36p +1 validated silent c.162 p.S54 0.120 HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) - no_errors 159 0 0.00 229 32 12.21 NA NA NA SLC25A35 0 genome.wustl.edu 36 17 8138818 8138818 + Silent SNP G G A TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 17 8138818 8138818 G A SNP SLC25A35 NM_201520.1 human genbank 54_36p -1 provisional silent c.33 p.C11 0.992 superfamily_Mitoch_carrier,HMMPfam_Mito_carr superfamily_Mitoch_carrier,HMMPfam_Mito_carr - no_errors 68 0 0.00 95 58 37.91 0 4 100.00 KRT19 0 genome.wustl.edu 36 17 36933744 36933744 + Missense_Mutation SNP G G C TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 G G G C G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 17 36933744 36933744 G C SNP KRT19 NM_002276.4 human genbank 54_36p -1 reviewed missense c.980 p.T327R 0.990 HMMPfam_Filament superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF - no_errors 35 2 5.41 56 34 37.78 NA NA NA UQCC 0 genome.wustl.edu 36 20 33425414 33425414 + Missense_Mutation SNP C C A TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 C C C A C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 20 33425414 33425414 C A SNP UQCC NM_018244.3 human genbank 54_36p -1 validated missense c.393 p.E131D 1.000 NULL HMMPfam_Ubiq_cyt_C_chap - no_errors 112 4 3.45 99 67 40.36 17 8 32.00 RUNX1 0 genome.wustl.edu 36 21 35174747 35174747 + Missense_Mutation SNP C C T TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 21 35174747 35174747 C T SNP RUNX1 NM_001754.2 human genbank 54_36p -1 reviewed missense c.485 p.R162K 1.000 superfamily_p53-like transcription factors,HMMPfam_Runt superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI - no_errors 49 2 3.92 36 22 37.93 230 215 48.31 U2AF1 0 genome.wustl.edu 36 21 43397525 43397525 + Missense_Mutation SNP G G A TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 21 43397525 43397525 G A SNP U2AF1 NM_001025203.1 human genbank 54_36p -1 reviewed missense c.101 p.S34F 1.000 HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1 HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928 - no_errors 39 0 0.00 55 31 36.05 78 69 46.94 PHF6 0 genome.wustl.edu 36 X 133339378 133339379 + Frame_Shift_Ins INS - - A TCGA-AB-2912-03A-01W-0732-08 TCGA-AB-2912-11A-01W-0761-09 - - - A - - Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq da01cad7-961b-46e2-8a80-9c846694ad5b c362f010-f227-4bf7-9e9c-15c7a15ce496 X 133339378 133339379 - A INS PHF6 NM_001015877.1 human genbank 54_36p +1 reviewed frame_shift_ins c.65_66 p.N23fs 1.000:1.000 NULL HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger - no_errors 24 0 0.00 17 31 64.58 4 8 66.67