Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
ATP2B3	0	genome.wustl.edu	36	X	152467453	152467453	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	X	152467453	152467453	G	T	SNP	ATP2B3	NM_001001344.1	human	genbank	54_36p	+1	reviewed	missense	c.1285	p.V429F	1.000	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors	58	3	4.92	175	105	37.10	NA	NA	NA
ZBTB7B	0	genome.wustl.edu	36	1	153254070	153254070	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	1	153254070	153254070	G	A	SNP	ZBTB7B	NM_015872.2	human	genbank	54_36p	+1	validated	missense	c.310	p.E104K	1.000	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB	HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors	24	0	0.00	172	98	36.16	133	134	50.19
LOC730032	0	genome.wustl.edu	36	2	131391112	131391112	+	Silent	SNP	C	C	T			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	2	131391112	131391112	C	T	SNP	LOC730032	XM_001132160.2	human	genbank	54_36p	+1	model	silent	c.3123	p.Y1041	0.000	NULL	NULL	-	no_errors	7	0	0.00	37	30	44.12	NA	NA	NA
AFF4	0	genome.wustl.edu	36	5	132256676	132256676	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	5	132256676	132256676	T	G	SNP	AFF4	NM_014423.3	human	genbank	54_36p	-1	validated	missense	c.2341	p.K781Q	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors	75	1	1.32	89	47	33.81	13	14	51.85
WEE2	0	genome.wustl.edu	36	7	141075826	141075826	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	A	A	A	T	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	7	141075826	141075826	A	T	SNP	WEE2	NM_001105558.1	human	genbank	54_36p	+1	validated	missense	c.1562	p.Q521L	0.043	NULL	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors	73	3	3.95	116	67	36.22	NA	NA	NA
KCNU1	0	genome.wustl.edu	36	8	36785454	36785454	+	Silent	SNP	G	G	A			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	8	36785454	36785454	G	A	SNP	KCNU1	NM_001031836.2	human	genbank	54_36p	+1	validated	silent	c.717	p.A239	1.000	HMMPfam_Ion_trans,superfamily_SSF81324	HMMPfam_BK_channel_a,HMMPfam_Ion_trans,superfamily_NAD(P)-bd,superfamily_SSF81324	-	no_errors	64	2	2.99	143	74	34.10	NA	NA	NA
LOC392301	0	genome.wustl.edu	36	9	32323505	32323505	+	RNA	SNP	C	C	T			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	9	32323505	32323505	C	T	SNP	LOC392301	XR_017331.2	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene	89	6	6.32	280	168	36.84	53	0	0.00
KCNE3	0	genome.wustl.edu	36	11	73846174	73846174	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	11	73846174	73846174	T	C	SNP	KCNE3	NM_005472.4	human	genbank	54_36p	-1	reviewed	missense	c.83	p.N28S	0.512	NULL	NULL	-	no_errors	38	1	2.56	77	34	30.09	20	16	44.44
CKAP4	0	genome.wustl.edu	36	12	105157456	105157456	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	12	105157456	105157456	G	A	SNP	CKAP4	NM_006825.3	human	genbank	54_36p	-1	validated	missense	c.1285	p.R429C	0.000	NULL	NULL	-	no_errors	14	0	0.00	65	12	15.58	25	10	28.57
FLT3	0	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	G	rs121913488		TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	13	27490642	27490642	C	G	SNP	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	missense	c.2503	p.D835H	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	44	0	0.00	100	46	30.46	401	313	43.78
MBTPS1	0	genome.wustl.edu	36	16	82658861	82658861	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	16	82658861	82658861	C	T	SNP	MBTPS1	NM_003791.2	human	genbank	54_36p	-1	reviewed	missense	c.2140	p.V714M	0.992	NULL	HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Pept_S8_S53	-	no_errors	29	1	3.33	84	53	38.41	39	26	40.00
CIC	0	genome.wustl.edu	36	19	47483358	47483358	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	19	47483358	47483358	G	A	SNP	CIC	NM_015125.3	human	genbank	54_36p	+1	validated	missense	c.499	p.G167R	1.000	NULL	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box	-	no_errors	30	1	3.23	91	37	28.91	47	67	58.26
ARHGAP40	0	genome.wustl.edu	36	20	36690993	36690993	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	20	36690993	36690993	T	C	SNP	C20orf95	XM_293123.1	human	genbank	54_36p	+1	model	missense	c.409	p.S137P	0.003	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	-	no_errors	320	6	1.84	399	189	31.98	NA	NA	NA
TTC3	0	genome.wustl.edu	36	21	37460160	37460160	+	Silent	SNP	C	C	T			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	21	37460160	37460160	C	T	SNP	TTC3	NM_001001894.1	human	genbank	54_36p	+1	validated	silent	c.3774	p.S1258	0.000	superfamily_Spectrin,superfamily_SSF48452	HMMPfam_TPR_1,HMMSmart_RING,HMMPfam_zf-C3HC4,HMMSmart_TPR,superfamily_Spectrin,superfamily_SSF48452,superfamily_SSF57850	-	no_errors	37	2	5.13	89	54	37.24	29	47	61.84
ATF7IP	0	genome.wustl.edu	36	12	14510735	14510738	+	Frame_Shift_Del	DEL	ACAA	ACAA	-			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	ACAA	ACAA	ACAA	-	ACAA	ACAA	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	14873dc1-e10c-4d0f-b047-6ff5eb91f6fa	8dd5ac8c-f1e2-418b-b7a8-6c6ea3eb1f31	12	14510735	14510738	ACAA	-	DEL	ATF7IP	NM_018179.3	human	genbank	54_36p	+1	validated	frame_shift_del	c.2806_2809	p.N937fs	0.999:0.994:0.986:0.999	NULL	HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA