Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
TCEAL3	0	genome.wustl.edu	36	X	102751098	102751098	+	Silent	SNP	A	A	G			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	63fe7f58-796e-4cf8-bc6e-957e1e0f091b	762a8778-551f-476e-b434-faf19a65f6de	X	102751098	102751098	A	G	SNP	TCEAL3	NM_001006933.1	human	genbank	54_36p	+1	reviewed	silent	c.450	p.Q150	1.000	HMMPfam_TFA	HMMPfam_TFA	-	no_errors	128	4	3.03	189	38	16.67	4	0	0.00
CNOT6L	0	genome.wustl.edu	36	4	78866545	78866545	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	63fe7f58-796e-4cf8-bc6e-957e1e0f091b	762a8778-551f-476e-b434-faf19a65f6de	4	78866545	78866545	C	T	SNP	CNOT6L	NM_144571.2	human	genbank	54_36p	-1	validated	missense	c.1255	p.V419I	1.000	HMMPfam_Exo_endo_phos,superfamily_DNase I-like	HMMPfam_LRR_1,HMMSmart_SM00369,HMMPfam_Exo_endo_phos,superfamily_DNase I-like,superfamily_L domain-like	-	no_errors	72	3	3.95	87	38	30.40	8	3	27.27
EGFLAM	0	genome.wustl.edu	36	5	38487301	38487301	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	63fe7f58-796e-4cf8-bc6e-957e1e0f091b	762a8778-551f-476e-b434-faf19a65f6de	5	38487301	38487301	G	A	SNP	EGFLAM	NM_152403.2	human	genbank	54_36p	+1	validated	missense	c.2671	p.G891R	1.000	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2	HMMSmart_LamG,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_EGF,HMMSmart_EGF,superfamily_FN_III-like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors	89	3	3.19	76	33	30.28	NA	NA	NA
PTPRD	0	genome.wustl.edu	36	9	8366658	8366658	+	Silent	SNP	A	A	G			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	63fe7f58-796e-4cf8-bc6e-957e1e0f091b	762a8778-551f-476e-b434-faf19a65f6de	9	8366658	8366658	A	G	SNP	PTPRD	NM_002839.1	human	genbank	54_36p	-1	reviewed	silent	c.4455	p.L1485	0.168	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,PatternScan_TYR_PHOSPHATASE_1,superfamily_Immunoglobulin,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors	104	5	4.50	112	102	47.66	NA	NA	NA
LRIT1	0	genome.wustl.edu	36	10	85981730	85981730	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	63fe7f58-796e-4cf8-bc6e-957e1e0f091b	762a8778-551f-476e-b434-faf19a65f6de	10	85981730	85981730	C	T	SNP	LRIT1	NM_015613.2	human	genbank	54_36p	-1	validated	missense	c.1805	p.R602H	0.670	NULL	HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_ig,superfamily_SSF48726,superfamily_SSF52058	-	no_errors	22	0	0.00	32	11	25.58	NA	NA	NA
CYP4F12	0	genome.wustl.edu	36	19	15655469	15655469	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	63fe7f58-796e-4cf8-bc6e-957e1e0f091b	762a8778-551f-476e-b434-faf19a65f6de	19	15655469	15655469	C	T	SNP	CYP4F12	NM_023944.2	human	genbank	54_36p	+1	reviewed	missense	c.814	p.R272W	1.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors	87	5	5.38	46	18	28.12	NA	NA	NA
ADNP	0	genome.wustl.edu	36	20	48942512	48942512	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	63fe7f58-796e-4cf8-bc6e-957e1e0f091b	762a8778-551f-476e-b434-faf19a65f6de	20	48942512	48942512	T	G	SNP	ADNP	NM_015339.2	human	genbank	54_36p	-1	reviewed	missense	c.2146	p.K716Q	1.000	NULL	HMMPfam_Homeobox,HMMSmart_HOX,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1	-	no_errors	45	3	6.25	71	42	37.17	47	38	44.71
RUNX1	0	genome.wustl.edu	36	21	35153653	35153653	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	63fe7f58-796e-4cf8-bc6e-957e1e0f091b	762a8778-551f-476e-b434-faf19a65f6de	21	35153653	35153653	G	A	SNP	RUNX1	NM_001754.2	human	genbank	54_36p	-1	reviewed	nonsense	c.601	p.R201*	1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors	84	1	1.18	57	18	24.00	412	244	37.14
TBC1D10A	0	genome.wustl.edu	36	22	29021731	29021732	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	-	-	-	C	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	63fe7f58-796e-4cf8-bc6e-957e1e0f091b	762a8778-551f-476e-b434-faf19a65f6de	22	29021731	29021732	-	C	INS	TBC1D10A	NM_031937.1	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.519_518	p.H174fs	0.995:1.000	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors	16	0	0.00	32	4	11.11	14	0	0.00