Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
ETV3	0	genome.wustl.edu	36	1	155371935	155371935	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	1	155371935	155371935	C	T	SNP	ETV3	NM_005240.1	human	genbank	54_36p	-1	validated	missense	c.236	p.R79K	1.000	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785	-	no_errors	317	14	4.23	177	128	41.16	6	6	50.00
GREM2	0	genome.wustl.edu	36	1	238723327	238723327	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	1	238723327	238723327	G	T	SNP	GREM2	NM_022469.3	human	genbank	54_36p	-1	reviewed	missense	c.72	p.N24K	1.000	NULL	HMMPfam_DAN,HMMSmart_CT	-	no_errors	47	1	2.08	66	40	37.38	NA	NA	NA
OR6B2	0	genome.wustl.edu	36	2	240617625	240617625	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	2	240617625	240617625	C	A	SNP	OR6B2	NM_001005853.1	human	genbank	54_36p	-1	provisional	missense	c.895	p.D299Y	0.046	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	78	0	0.00	81	71	45.81	NA	NA	NA
ARMC3	0	genome.wustl.edu	36	10	23359678	23359678	+	Silent	SNP	C	C	A			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	10	23359678	23359678	C	A	SNP	ARMC3	NM_173081.3	human	genbank	54_36p	+1	validated	silent	c.2193	p.T731	1.000	NULL	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat	-	no_errors	332	7	2.05	168	142	45.08	NA	NA	NA
WT1	0	genome.wustl.edu	36	11	32370142	32370142	+	Missense_Mutation	SNP	G	G	A	rs121907900		TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	11	32370142	32370142	G	A	SNP	WT1	NM_024426.3	human	genbank	54_36p	-1	reviewed	missense	c.1384	p.R462W	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_WT1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	142	1	0.69	124	46	26.90	16	7	30.43
CCDC60	0	genome.wustl.edu	36	12	118453114	118453114	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	12	118453114	118453114	G	A	SNP	CCDC60	NM_178499.3	human	genbank	54_36p	+1	validated	missense	c.1414	p.A472T	0.954	NULL	NULL	-	no_errors	161	3	1.83	123	112	46.86	NA	NA	NA
SLITRK1	0	genome.wustl.edu	36	13	83352095	83352095	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	13	83352095	83352095	G	T	SNP	SLITRK1	NM_052910.1	human	genbank	54_36p	-1	validated	missense	c.1549	p.Q517K	1.000	superfamily_SSF52058	HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors	161	7	4.17	70	61	46.21	NA	NA	NA
IDH2	0	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T	rs121913502		TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	15	88432938	88432938	C	T	SNP	IDH2	NM_002168.2	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	116	6	4.92	91	79	46.20	137	106	43.62
MEFV	0	genome.wustl.edu	36	16	3239463	3239463	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	16	3239463	3239463	C	T	SNP	MEFV	NM_000243.2	human	genbank	54_36p	-1	reviewed	missense	c.1229	p.R410H	0.025	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMPfam_PAAD_DAPIN,HMMSmart_SM00589,superfamily_DEATH domain,HMMSmart_SM00449,superfamily_B-box zinc-binding domain	-	no_errors	140	2	1.40	61	75	54.74	NA	NA	NA
SMG1	0	genome.wustl.edu	36	16	18760441	18760441	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	16	18760441	18760441	A	G	SNP	SMG1	NM_015092.4	human	genbank	54_36p	-1	reviewed	missense	c.6643	p.F2215L	1.000	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)	HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_2	-	no_errors	469	12	2.49	168	145	45.45	51	49	49.00
GPATCH8	0	genome.wustl.edu	36	17	39831216	39831216	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	17	39831216	39831216	G	A	SNP	GPATCH8	NM_001002909.1	human	genbank	54_36p	-1	validated	missense	c.3755	p.T1252I	1.000	NULL	HMMPfam_G-patch,HMMSmart_SM00443,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	394	10	2.44	157	154	49.36	33	24	41.38
CEBPA	0	genome.wustl.edu	36	19	38484263	38484263	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	19	38484263	38484263	G	A	SNP	CEBPA	NM_004364.3	human	genbank	54_36p	-1	reviewed	missense	c.898	p.R300C	1.000	HMMSmart_BRLZ,HMMPfam_bZIP_2	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors	0	0	0.00	65	47	41.96	260	212	44.82
PDCD2L	0	genome.wustl.edu	36	19	39596586	39596586	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	19	39596586	39596586	T	C	SNP	PDCD2L	NM_032346.1	human	genbank	54_36p	+1	provisional	missense	c.791	p.I264T	1.000	HMMPfam_PDCD2_C	HMMPfam_PDCD2_C	-	no_errors	206	6	2.82	86	71	44.94	3	3	50.00
FCGBP	0	genome.wustl.edu	36	19	45075959	45075959	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	19	45075959	45075959	C	G	SNP	FCGBP	NM_003890.2	human	genbank	54_36p	-1	validated	missense	c.9491	p.C3164S	1.000	superfamily_Cysrich_TIL,HMMPfam_TIL	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors	375	3	0.79	193	45	18.83	NA	NA	NA
AURKC	0	genome.wustl.edu	36	19	62435849	62435849	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	19	62435849	62435849	C	T	SNP	AURKC	NM_001015878.1	human	genbank	54_36p	+1	reviewed	missense	c.424	p.R142C	0.983	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors	250	1	0.40	156	27	14.67	1	0	0.00
LOC257039	0	genome.wustl.edu	36	3	145057398	145057398	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	T	T	T	-	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	0f1fb2e2-2463-4e1d-af0b-069bc0144e88	69a5771e-80a6-4c0e-af50-c10f51c985f6	3	145057398	145057398	T	-	DEL	LOC257039	XM_172230.1	human	genbank	54_36p	-1	model	frame_shift_del	c.542	p.E181fs	1.000	HMMPfam_Ribosomal_S17e	HMMPfam_Ribosomal_S17e	-	no_errors	110	0	0.00	70	70	47.95	0	0	0.00