Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
RERE	0	genome.wustl.edu	36	1	8448659	8448659	+	Silent	SNP	G	G	A			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	1	8448659	8448659	G	A	SNP	RERE	NM_001042681.1	human	genbank	54_36p	-1	reviewed	silent	c.1116	p.S372	0.989	NULL	HMMPfam_GATA,HMMSmart_SM00401,HMMPfam_ELM2,HMMSmart_SM00717,HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_Atrophin-1,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors	75	7	8.54	134	96	40.68	28	30	51.72
ABCA4	0	genome.wustl.edu	36	1	94263182	94263182	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	1	94263182	94263182	C	T	SNP	ABCA4	NM_000350.2	human	genbank	54_36p	-1	reviewed	missense	c.4550	p.R1517H	0.994	NULL	HMMPfam_ABC_tran,HMMSmart_AAA,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors	203	9	4.23	197	122	38.12	NA	NA	NA
DNMT3A	0	genome.wustl.edu	36	2	25322414	25322414	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	2	25322414	25322414	G	A	SNP	DNMT3A	NM_022552.3	human	genbank	54_36p	-1	reviewed	nonsense	c.1453	p.Q485*	1.000	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors	16	1	5.88	44	46	51.11	37	15	28.85
PAX3	0	genome.wustl.edu	36	2	222794334	222794334	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	2	222794334	222794334	C	T	SNP	PAX3	NM_181459.4	human	genbank	54_36p	-1	reviewed	missense	c.809	p.R270H	1.000	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_PAX,HMMSmart_SM00351,PatternScan_PAIRED_1,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors	57	3	5.00	115	62	34.83	NA	NA	NA
ENPEP	0	genome.wustl.edu	36	4	111617157	111617157	+	Silent	SNP	C	C	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	4	111617157	111617157	C	T	SNP	ENPEP	NM_001977.3	human	genbank	54_36p	+1	validated	silent	c.138	p.S46	0.000	NULL	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain,superfamily_Leukotriene A4 hydrolase N-terminal domain"	-	no_errors	57	10	14.93	117	106	47.32	NA	NA	NA
GPM6A	0	genome.wustl.edu	36	4	176810076	176810076	+	Silent	SNP	G	G	A			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	4	176810076	176810076	G	A	SNP	GPM6A	NM_005277.3	human	genbank	54_36p	-1	validated	silent	c.444	p.T148	1.000	HMMPfam_Myelin_PLP	HMMPfam_Myelin_PLP,HMMSmart_SM00002,PatternScan_MYELIN_PLP_1,PatternScan_MYELIN_PLP_2	-	no_errors	14	0	0.00	56	49	46.23	NA	NA	NA
ATP10B	0	genome.wustl.edu	36	5	159958378	159958378	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	5	159958378	159958378	A	G	SNP	ATP10B	NM_025153.2	human	genbank	54_36p	-1	validated	missense	c.3541	p.Y1181H	0.993	NULL	HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors	57	3	5.00	181	119	38.89	NA	NA	NA
LOC728843	0	genome.wustl.edu	36	5	165388861	165388861	+	RNA	SNP	C	C	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	5	165388861	165388861	C	T	SNP	LOC728843	XR_015391.1	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.997	-	-	-	pseudogene	91	8	8.08	148	126	45.32	NA	NA	NA
LOC642943	0	genome.wustl.edu	36	9	94687368	94687368	+	RNA	SNP	A	A	G			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	9	94687368	94687368	A	G	SNP	LOC642943	XR_039168.1	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.127	-	-	-	pseudogene	73	4	5.13	148	78	34.06	NA	NA	NA
C5	0	genome.wustl.edu	36	9	122772344	122772344	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	9	122772344	122772344	T	G	SNP	C5	NM_001735.2	human	genbank	54_36p	-1	reviewed	missense	c.4087	p.T1363P	0.204	NULL	HMMPfam_ANATO,HMMSmart_ANATO,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terp_cyc_toroid,HMMPfam_A2M_recep,superfamily_AM_receptor_bind,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,superfamily_Anaphylatoxin,HMMPfam_NTR,HMMSmart_C345C,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors	113	9	7.38	288	206	41.45	3	2	40.00
CDH23	0	genome.wustl.edu	36	10	73131787	73131787	+	Silent	SNP	G	G	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	10	73131787	73131787	G	T	SNP	CDH23	NM_022124.4	human	genbank	54_36p	+1	reviewed	silent	c.2400	p.V800	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors	13	1	7.14	32	12	26.67	2	1	33.33
SEMA6D	0	genome.wustl.edu	36	15	45843351	45843351	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	15	45843351	45843351	C	T	SNP	SEMA6D	NM_153618.1	human	genbank	54_36p	+1	reviewed	missense	c.760	p.R254C	1.000	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_errors	213	8	3.62	296	177	37.03	NA	NA	NA
NFKBIZ	0	genome.wustl.edu	36	3	103058719	103058720	+	Splice_Site	INS	-	-	ACTTTTAGAAAGCTTTAATAACC	rs33981747		TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-	-	ACTTTTAGAAAGCTTTAATAACC	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	3	103058719	103058720	-	ACTTTTAGAAAGCTTTAATAACC	INS	NFKBIZ	NM_031419.1	human	genbank	54_36p	+1	reviewed	splice_site_ins	c.1935+2_1935+1	e10+2	0.997:0.000	-	-	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
NPM1	0	genome.wustl.edu	36	5	170770149	170770150	+	Frame_Shift_Ins	INS	-	-	CTGC			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-	-	CTGC	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	5	170770149	170770150	-	CTGC	INS	NPM1	NM_002520.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.860_861	p.W288fs	1.000:1.000	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
FLT3	0	genome.wustl.edu	36	13	27506253	27506254	+	In_Frame_Ins	INS	-	-	GATCATATTCATATTCTCCAAACTCTAAATTTTCTCTTGGAAACTCCCATTTGA			TCGA-AB-2869-03A-01W-0761-09	TCGA-AB-2869-11A-01W-0732-08	-	-	-	GATCATATTCATATTCTCCAAACTCTAAATTTTCTCTTGGAAACTCCCATTTGA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b123374d-2ce1-4a34-8a09-8dfbb4f6629f	c6143181-0581-4a20-9cae-d094d36312ae	13	27506253	27506254	-	GATCATATTCATATTCTCCAAACTCTAAATTTTCTCTTGGAAACTCCCATTTGA	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1803_1802	p.602in_frame_insQMGVSKRKFRVWRI*I*S	0.998:1.000	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA