Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
TCEANC	0	genome.wustl.edu	36	X	13590684	13590684	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2862-03B-01W-0728-08	TCGA-AB-2862-11B-01W-0729-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	2907d873-3189-4bbb-9c40-127d61225086	a8d14ea2-aa95-48c9-8c69-86b8ac62489a	X	13590684	13590684	A	G	SNP	TCEANC	NM_152634.2	human	genbank	54_36p	+1	validated	missense	c.226	p.T76A	1.000	HMMPfam_TFIIS,superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70	HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMPfam_TFIIS,superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70,HMMSmart_SM00510,superfamily_Zinc beta-ribbon	-	no_errors	179	0	0.00	107	57	34.13	5	0	0.00
BCAR3	0	genome.wustl.edu	36	1	93820716	93820716	+	Silent	SNP	G	G	A			TCGA-AB-2862-03B-01W-0728-08	TCGA-AB-2862-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	2907d873-3189-4bbb-9c40-127d61225086	a8d14ea2-aa95-48c9-8c69-86b8ac62489a	1	93820716	93820716	G	A	SNP	BCAR3	NM_003567.2	human	genbank	54_36p	-1	reviewed	silent	c.1416	p.G472	0.782	superfamily_Ras GEF	HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00147,superfamily_Ras GEF	-	no_errors	150	0	0.00	97	59	37.58	1	0	0.00
DRD5P1	0	genome.wustl.edu	36	2	91237422	91237422	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2862-03B-01W-0728-08	TCGA-AB-2862-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	2907d873-3189-4bbb-9c40-127d61225086	a8d14ea2-aa95-48c9-8c69-86b8ac62489a	2	91237422	91237422	C	T	SNP	DRD5P1	ENST00000328341	human	ensembl	54_36p	-1	known	missense	c.215	p.R72H	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,superfamily_SSF81321	-	no_errors	81	0	0.00	61	34	35.79	NA	NA	NA
ADCY5	0	genome.wustl.edu	36	3	124554002	124554002	+	Silent	SNP	C	C	T			TCGA-AB-2862-03B-01W-0728-08	TCGA-AB-2862-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	2907d873-3189-4bbb-9c40-127d61225086	a8d14ea2-aa95-48c9-8c69-86b8ac62489a	3	124554002	124554002	C	T	SNP	ADCY5	NM_183357.1	human	genbank	54_36p	-1	validated	silent	c.1251	p.A417	0.445	NULL	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors	257	1	0.39	52	41	43.16	NA	NA	NA
EYA4	0	genome.wustl.edu	36	6	133831555	133831555	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2862-03B-01W-0728-08	TCGA-AB-2862-11B-01W-0729-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	2907d873-3189-4bbb-9c40-127d61225086	a8d14ea2-aa95-48c9-8c69-86b8ac62489a	6	133831555	133831555	C	A	SNP	EYA4	NM_004100.4	human	genbank	54_36p	+1	reviewed	missense	c.963	p.N321K	0.993	NULL	HMMPfam_Hydrolase	-	no_errors	235	0	0.00	117	102	46.15	NA	NA	NA
HECW1	0	genome.wustl.edu	36	7	43514204	43514204	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2862-03B-01W-0728-08	TCGA-AB-2862-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	2907d873-3189-4bbb-9c40-127d61225086	a8d14ea2-aa95-48c9-8c69-86b8ac62489a	7	43514204	43514204	G	A	SNP	HECW1	NM_015052.3	human	genbank	54_36p	+1	validated	missense	c.3815	p.R1272Q	1.000	HMMSmart_HECTc,superfamily_HECT	HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB	-	no_errors	303	0	0.00	115	83	41.50	NA	NA	NA
HSD17B7P2	0	genome.wustl.edu	36	10	38685318	38685318	+	RNA	SNP	C	C	T			TCGA-AB-2862-03B-01W-0728-08	TCGA-AB-2862-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	2907d873-3189-4bbb-9c40-127d61225086	a8d14ea2-aa95-48c9-8c69-86b8ac62489a	10	38685318	38685318	C	T	SNP	HSD17B7P2	NR_003086.1	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.033	-	-	-	pseudogene	775	38	4.67	95	56	36.84	1	0	0.00
TCERG1L	0	genome.wustl.edu	36	10	132781477	132781477	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2862-03B-01W-0728-08	TCGA-AB-2862-11B-01W-0729-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	2907d873-3189-4bbb-9c40-127d61225086	a8d14ea2-aa95-48c9-8c69-86b8ac62489a	10	132781477	132781477	A	G	SNP	TCERG1L	NM_174937.3	human	genbank	54_36p	-1	validated	missense	c.1699	p.F567L	1.000	HMMPfam_FF,HMMSmart_FF,superfamily_FF	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMPfam_FF,HMMSmart_FF,superfamily_FF	-	no_errors	255	0	0.00	132	86	39.27	NA	NA	NA
FAM214A	0	genome.wustl.edu	36	15	50673187	50673187	+	Silent	SNP	A	A	G			TCGA-AB-2862-03B-01W-0728-08	TCGA-AB-2862-11B-01W-0729-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	2907d873-3189-4bbb-9c40-127d61225086	a8d14ea2-aa95-48c9-8c69-86b8ac62489a	15	50673187	50673187	A	G	SNP	KIAA1370	NM_019600.2	human	genbank	54_36p	-1	validated	silent	c.2688	p.I896	0.992	NULL	NULL	-	no_errors	113	0	0.00	89	43	31.62	14	10	41.67
AKAP13	0	genome.wustl.edu	36	15	83919417	83919417	+	Silent	SNP	G	G	A			TCGA-AB-2862-03B-01W-0728-08	TCGA-AB-2862-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	2907d873-3189-4bbb-9c40-127d61225086	a8d14ea2-aa95-48c9-8c69-86b8ac62489a	15	83919417	83919417	G	A	SNP	AKAP13	NM_006738.4	human	genbank	54_36p	+1	reviewed	silent	c.714	p.P238	0.233	NULL	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_PH,HMMSmart_PH,superfamily_ANK,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,PatternScan_EF_HAND_1,HMMPfam_RII_binding_1,superfamily_SSF50729,superfamily_SSF57889	-	no_errors	202	0	0.00	145	89	37.55	4	2	33.33
C17orf97	0	genome.wustl.edu	36	17	263938	263938	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2862-03B-01W-0728-08	TCGA-AB-2862-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	2907d873-3189-4bbb-9c40-127d61225086	a8d14ea2-aa95-48c9-8c69-86b8ac62489a	17	263938	263938	G	A	SNP	C17orf97	NM_001013672.3	human	genbank	54_36p	+1	validated	missense	c.988	p.E330K	0.000	NULL	NULL	-	no_errors	32	1	3.03	19	7	26.92	6	0	0.00
CSH2	0	genome.wustl.edu	36	17	59303780	59303780	+	Silent	SNP	G	G	A			TCGA-AB-2862-03B-01W-0728-08	TCGA-AB-2862-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	2907d873-3189-4bbb-9c40-127d61225086	a8d14ea2-aa95-48c9-8c69-86b8ac62489a	17	59303780	59303780	G	A	SNP	CSH2	NM_020991.3	human	genbank	54_36p	-1	reviewed	silent	c.345	p.P115	0.987	HMMPfam_Hormone_1,superfamily_4-helical cytokines	HMMPfam_Hormone_1,superfamily_4-helical cytokines,PatternScan_SOMATOTROPIN_1,PatternScan_SOMATOTROPIN_2	-	no_errors	99	0	0.00	50	11	18.03	NA	NA	NA
NCCRP1	0	genome.wustl.edu	36	19	44383213	44383213	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2862-03B-01W-0728-08	TCGA-AB-2862-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	2907d873-3189-4bbb-9c40-127d61225086	a8d14ea2-aa95-48c9-8c69-86b8ac62489a	19	44383213	44383213	G	A	SNP	NCCRP1	NM_001001414.1	human	genbank	54_36p	+1	provisional	missense	c.805	p.V269M	1.000	HMMPfam_FBA,superfamily_Gal_bind_like	HMMPfam_FBA,superfamily_Gal_bind_like	-	no_errors	86	0	0.00	48	30	38.46	NA	NA	NA
ARFGEF2	0	genome.wustl.edu	36	20	47023105	47023105	+	Silent	SNP	G	G	A			TCGA-AB-2862-03B-01W-0728-08	TCGA-AB-2862-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	2907d873-3189-4bbb-9c40-127d61225086	a8d14ea2-aa95-48c9-8c69-86b8ac62489a	20	47023105	47023105	G	A	SNP	ARFGEF2	NM_006420.2	human	genbank	54_36p	+1	reviewed	silent	c.1542	p.V514	1.000	superfamily_ARM-type_fold	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMPfam_DUF1981,superfamily_ARM-type_fold	-	no_errors	134	0	0.00	104	69	39.43	11	0	0.00