Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
SAGE1	0	genome.wustl.edu	36	X	134816810	134816810	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8bdab9f4-ca3d-4f77-b83e-6ec7df6c2a27	56552b20-8a32-4584-a3dc-91cc0e4196f4	X	134816810	134816810	G	A	SNP	SAGE1	NM_018666.2	human	genbank	54_36p	+1	reviewed	missense	c.796	p.D266N	0.516	NULL	NULL	-	no_errors	105	22	17.32	7	75	90.36	0	0	0.00
LOC727882	0	genome.wustl.edu	36	1	7692	7692	+	RNA	SNP	G	G	A			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8bdab9f4-ca3d-4f77-b83e-6ec7df6c2a27	56552b20-8a32-4584-a3dc-91cc0e4196f4	1	7692	7692	G	A	SNP	LOC727882	XR_015152.2	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.043	-	-	-	pseudogene	0	0	0.00	0	0	0.00	1	0	0.00
ANKRD18A	0	genome.wustl.edu	36	9	38605714	38605714	+	Silent	SNP	G	G	A			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8bdab9f4-ca3d-4f77-b83e-6ec7df6c2a27	56552b20-8a32-4584-a3dc-91cc0e4196f4	9	38605714	38605714	G	A	SNP	ANKRD18A	XM_001726105.1	human	genbank	54_36p	-1	model	silent	c.372	p.G124	0.950	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors	25	2	7.41	60	53	46.90	NA	NA	NA
TET1	0	genome.wustl.edu	36	10	70120655	70120655	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8bdab9f4-ca3d-4f77-b83e-6ec7df6c2a27	56552b20-8a32-4584-a3dc-91cc0e4196f4	10	70120655	70120655	C	T	SNP	TET1	NM_030625.2	human	genbank	54_36p	+1	validated	missense	c.5489	p.T1830I	0.944	NULL	HMMPfam_zf-CXXC	-	no_errors	79	16	16.67	87	65	42.21	6	5	45.45
PTPN11	0	genome.wustl.edu	36	12	111411235	111411235	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8bdab9f4-ca3d-4f77-b83e-6ec7df6c2a27	56552b20-8a32-4584-a3dc-91cc0e4196f4	12	111411235	111411235	C	T	SNP	PTPN11	NM_002834.3	human	genbank	54_36p	+1	reviewed	missense	c.1472	p.P491L	1.000	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain	-	no_errors	261	34	11.49	333	341	50.00	13	17	56.67
PHF6	0	genome.wustl.edu	36	X	133375569	133375570	+	Frame_Shift_Ins	INS	-	-	GGATA			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	-	-	-	GGATA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8bdab9f4-ca3d-4f77-b83e-6ec7df6c2a27	56552b20-8a32-4584-a3dc-91cc0e4196f4	X	133375569	133375570	-	GGATA	INS	PHF6	NM_001015877.1	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.636_637	p.F213fs	1.000:1.000	NULL	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA