Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
STAG2	0	genome.wustl.edu	36	X	123052296	123052296	+	Splice_Site	SNP	G	G	A			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f8ec36ae-f2fc-4b21-8ae9-facaa091e1ae	7823e450-4039-472e-8e4a-27d849a4350b	X	123052296	123052296	G	A	SNP	STAG2	ENST00000218089	human	ensembl	58_37c	+1	known	splice_site	c.3467+1	e29+1	1.000	-	-	-	no_errors	124	2	1.59	79	72	47.37	NA	NA	NA
NOTCH1	0	genome.wustl.edu	36	9	138514953	138514953	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f8ec36ae-f2fc-4b21-8ae9-facaa091e1ae	7823e450-4039-472e-8e4a-27d849a4350b	9	138514953	138514953	C	T	SNP	NOTCH1	ENST00000277541	human	ensembl	58_37c	-1	known	missense	c.5806	p.A1936T	1.000	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	PatternScan_ASX_HYDROXYL,HMMPfam_Notch,HMMSmart_NL,superfamily_Notch_region,HMMSmart_EGF_CA,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_NOD,HMMPfam_NODP,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors	282	2	0.70	133	116	46.22	NA	NA	NA
IDH2	0	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T	rs121913502		TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f8ec36ae-f2fc-4b21-8ae9-facaa091e1ae	7823e450-4039-472e-8e4a-27d849a4350b	15	88432938	88432938	C	T	SNP	IDH2	ENST00000330062	human	ensembl	58_37c	-1	known	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	107	0	0.00	73	45	38.14	NA	NA	NA
KIF2B	0	genome.wustl.edu	36	17	49256322	49256322	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f8ec36ae-f2fc-4b21-8ae9-facaa091e1ae	7823e450-4039-472e-8e4a-27d849a4350b	17	49256322	49256322	C	T	SNP	KIF2B	ENST00000268919	human	ensembl	58_37c	+1	known	missense	c.929	p.T310M	1.000	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	57	0	0.00	32	29	47.54	NA	NA	NA
SRSF2	0	genome.wustl.edu	36	17	72244531	72244554	+	In_Frame_Del	DEL	GGCGGCTGTGGTGTGAGTCCGGGG	GGCGGCTGTGGTGTGAGTCCGGGG	-			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	GGCGGCTGTGGTGTGAGTCCGGGG	GGCGGCTGTGGTGTGAGTCCGGGG	GGCGGCTGTGGTGTGAGTCCGGGG	-	GGCGGCTGTGGTGTGAGTCCGGGG	GGCGGCTGTGGTGTGAGTCCGGGG	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f8ec36ae-f2fc-4b21-8ae9-facaa091e1ae	7823e450-4039-472e-8e4a-27d849a4350b	17	72244531	72244554	GGCGGCTGTGGTGTGAGTCCGGGG	-	DEL	SFRS2	ENST00000358156	human	ensembl	58_37c	-1	known	in_frame_del	c.307_284	p.PPDSHHSR95in_frame_del	0.998:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.217:0.326:0.310:0.137:0.989	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
RUNX1	0	genome.wustl.edu	36	21	35086465	35086487	+	Frame_Shift_Del	DEL	CGCGGCGGCGAGCGCTCGCCGCC	CGCGGCGGCGAGCGCTCGCCGCC	-			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	CGCGGCGGCGAGCGCTCGCCGCC	CGCGGCGGCGAGCGCTCGCCGCC	CGCGGCGGCGAGCGCTCGCCGCC	-	CGCGGCGGCGAGCGCTCGCCGCC	CGCGGCGGCGAGCGCTCGCCGCC	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f8ec36ae-f2fc-4b21-8ae9-facaa091e1ae	7823e450-4039-472e-8e4a-27d849a4350b	21	35086465	35086487	CGCGGCGGCGAGCGCTCGCCGCC	-	DEL	RUNX1	ENST00000300305	human	ensembl	58_37c	-1	known	frame_shift_del	c.1280_1258	p.G420fs	1.000:1.000:0.914:1.000:0.997:0.962:1.000:1.000:0.958:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:0.950:1.000:1.000	HMMPfam_RunxI	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA