Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
DAG1	0	genome.wustl.edu	36	3	49543349	49543349	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	a101f87f-d1fb-492c-88bb-715de3a865ad	404c79b4-f058-43dd-b1ff-581907da8da9	3	49543349	49543349	G	A	SNP	DAG1	NM_004393.2	human	genbank	54_36p	+1	reviewed	missense	c.401	p.S134N	0.264	HMMSmart_CADG,HMMPfam_DAG1,superfamily_Cadherin	HMMSmart_CADG,HMMPfam_DAG1,superfamily_Cadherin,superfamily_SSF111006	-	no_errors	82	1	1.19	99	72	41.86	6	8	57.14
C3orf56	0	genome.wustl.edu	36	3	128398485	128398485	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	a101f87f-d1fb-492c-88bb-715de3a865ad	404c79b4-f058-43dd-b1ff-581907da8da9	3	128398485	128398485	G	A	SNP	C3orf56	ENST00000398112	human	ensembl	54_36p	+1	known	missense	c.267	p.M89I	0.000	NULL	NULL	-	no_errors	33	0	0.00	77	53	39.85	NA	NA	NA
TBC1D2	0	genome.wustl.edu	36	9	100011143	100011143	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	A	A	A	C	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	a101f87f-d1fb-492c-88bb-715de3a865ad	404c79b4-f058-43dd-b1ff-581907da8da9	9	100011143	100011143	A	C	SNP	TBC1D2	NM_018421.3	human	genbank	54_36p	-1	validated	missense	c.1778	p.L593R	1.000	NULL	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors	49	0	0.00	65	55	45.83	6	23	76.67
SYT15	0	genome.wustl.edu	36	10	46388671	46388671	+	Silent	SNP	G	G	A			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	a101f87f-d1fb-492c-88bb-715de3a865ad	404c79b4-f058-43dd-b1ff-581907da8da9	10	46388671	46388671	G	A	SNP	SYT15	NM_031912.3	human	genbank	54_36p	-1	reviewed	silent	c.271	p.L91	0.005	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),PatternScan_CNMP_BINDING_1	-	no_errors	209	10	4.55	130	42	24.00	0	0	0.00
KRT79	0	genome.wustl.edu	36	12	51504252	51504252	+	Silent	SNP	G	G	A			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	a101f87f-d1fb-492c-88bb-715de3a865ad	404c79b4-f058-43dd-b1ff-581907da8da9	12	51504252	51504252	G	A	SNP	KRT79	NM_175834.2	human	genbank	54_36p	-1	validated	silent	c.1017	p.T339	0.988	superfamily_Prefoldin,HMMPfam_Filament	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors	88	0	0.00	72	66	47.83	NA	NA	NA
BAGE4	0	genome.wustl.edu	36	21	10120604	10120604	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	a101f87f-d1fb-492c-88bb-715de3a865ad	404c79b4-f058-43dd-b1ff-581907da8da9	21	10120604	10120604	G	A	SNP	BAGE4	NM_181704.1	human	genbank	54_36p	-1	provisional	missense	c.5	p.A2V	0.000	HMMPfam_BAGE	HMMPfam_BAGE	-	no_errors	76	0	0.00	56	14	19.44	NA	NA	NA
KRT8P15	0	genome.wustl.edu	36	2	203414070	203414072	+	RNA	DEL	GCT	GCT	-			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	GCT	GCT	GCT	-	GCT	GCT	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	a101f87f-d1fb-492c-88bb-715de3a865ad	404c79b4-f058-43dd-b1ff-581907da8da9	2	203414070	203414072	GCT	-	DEL	KRT8P15	XR_016994.2	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000:0.999:0.999	-	-	-	pseudogene	0	0	0.00	0	62	34.07	0	0	0.00