Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error NormalRefReads_WU NormalVarReads_WU NormalVAF_WU TumorRefReads_WU TumorVarReads_WU TumorVAF_WU RNARefReads_WU RNAVarReads_WU RNAVAF_WU LOC100130134 0 genome.wustl.edu 36 X 89181766 89181766 + RNA SNP C C G TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 C C C G C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a X 89181766 89181766 C G SNP LOC100130134 XR_037810.1 human genbank 54_36p -1 model rna NULL NULL 1.000 - - - pseudogene 77 0 0.00 17 57 77.03 7 0 0.00 PADI2 0 genome.wustl.edu 36 1 17291560 17291560 + Silent SNP G G A TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 1 17291560 17291560 G A SNP PADI2 NM_007365.2 human genbank 54_36p -1 reviewed silent c.585 p.P195 0.011 HMMPfam_PAD_M,superfamily_PAD_central superfamily_Cupredoxin,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_PAD_central,superfamily_SSF55909 - no_errors 94 1 1.03 47 28 37.33 40 10 20.00 NRAS 0 genome.wustl.edu 36 1 115058051 115058051 + Missense_Mutation SNP T T A rs121913255 TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 T T T A T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 1 115058051 115058051 T A SNP NRAS NM_002524.3 human genbank 54_36p -1 reviewed missense c.183 p.Q61H 1.000 HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors 95 1 1.03 77 29 26.85 77 39 33.62 PYGO2 0 genome.wustl.edu 36 1 153198033 153198033 + Missense_Mutation SNP C C G TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 C C C G C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 1 153198033 153198033 C G SNP PYGO2 NM_138300.3 human genbank 54_36p -1 validated missense c.1067 p.R356P 0.995 HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD - no_errors 93 0 0.00 25 31 55.36 28 24 46.15 SHC1 0 genome.wustl.edu 36 1 153204838 153204838 + Silent SNP C C G TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 C C C G C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 1 153204838 153204838 C G SNP SHC1 NM_183001.1 human genbank 54_36p -1 validated silent c.1428 p.S476 0.000 superfamily_SH2 domain HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like,superfamily_SH2 domain - no_errors 854 52 5.65 42 34 44.74 22 27 55.10 ARHGEF11 0 genome.wustl.edu 36 1 155220785 155220785 + Missense_Mutation SNP G G A TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 1 155220785 155220785 G A SNP ARHGEF11 NM_198236.2 human genbank 54_36p -1 reviewed missense c.193 p.R65C 1.000 HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMSmart_RGS,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_PH,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_SSF50729 - no_errors 160 0 0.00 76 31 28.97 5 4 44.44 FAM5C 0 genome.wustl.edu 36 1 188334865 188334865 + Missense_Mutation SNP G G A TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 1 188334865 188334865 G A SNP FAM5C NM_199051.1 human genbank 54_36p -1 provisional missense c.1207 p.R403C 0.986 NULL HMMPfam_MACPF,HMMSmart_SM00457 - no_errors 77 1 1.28 14 11 42.31 NA NA NA FAM5C 0 genome.wustl.edu 36 1 188517414 188517414 + Missense_Mutation SNP C C T TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 1 188517414 188517414 C T SNP FAM5C NM_199051.1 human genbank 54_36p -1 provisional missense c.326 p.R109H 1.000 HMMPfam_MACPF,HMMSmart_SM00457 HMMPfam_MACPF,HMMSmart_SM00457 - no_errors 62 0 0.00 21 14 38.89 NA NA NA KLHL18 0 genome.wustl.edu 36 3 47360205 47360205 + Missense_Mutation SNP T T C TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 3 47360205 47360205 T C SNP KLHL18 NM_025010.4 human genbank 54_36p +1 validated missense c.1495 p.S499P 1.000 HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB - no_errors 112 0 0.00 67 49 42.24 13 14 51.85 PLXNB1 0 genome.wustl.edu 36 3 48426931 48426931 + Silent SNP G G A TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 3 48426931 48426931 G A SNP PLXNB1 NM_002673.1 human genbank 54_36p -1 validated silent c.5457 p.D1819 0.995 superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,PatternScan_LIPOCALIN,HMMPfam_TIG,HMMSmart_SM00429,PatternScan_IG_MHC,HMMSmart_SM00423,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl,superfamily_E set domains,superfamily_Plexin repeat - no_errors 72 0 0.00 16 11 40.74 1 0 0.00 FEZF2 0 genome.wustl.edu 36 3 62331988 62331988 + Missense_Mutation SNP T T A TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 T T T A T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 3 62331988 62331988 T A SNP FEZF2 NM_018008.3 human genbank 54_36p -1 validated missense c.1064 p.H355L 1.000 HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers - no_errors 98 0 0.00 52 33 38.82 NA NA NA C6orf211 0 genome.wustl.edu 36 6 151817475 151817475 + Silent SNP C C T TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 6 151817475 151817475 C T SNP C6orf211 NM_024573.1 human genbank 54_36p +1 predicted silent c.141 p.H47 1.000 HMMPfam_DUF89,superfamily_DUF89 HMMPfam_DUF89,superfamily_DUF89 - no_errors 87 0 0.00 52 24 31.58 8 7 46.67 CUL1 0 genome.wustl.edu 36 7 148085114 148085114 + Missense_Mutation SNP A A G TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 A A A G A A Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 7 148085114 148085114 A G SNP CUL1 NM_003592.2 human genbank 54_36p +1 validated missense c.422 p.N141S 1.000 HMMPfam_Cullin,superfamily_Cullin repeat "HMMPfam_Cullin,PatternScan_CULLIN_1,HMMSmart_SM00182,superfamily_Cullin homology domain,superfamily_Cullin repeat,HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain" - no_errors 73 0 0.00 17 43 71.67 10 47 82.46 FAM83A 0 genome.wustl.edu 36 8 124290957 124290957 + 3'UTR SNP G G T TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 G G G T G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 8 124290957 124290957 G T SNP FAM83A NM_207006.4 human genbank 54_36p +1 validated 3_prime_untranslated_region c.*40 NULL 0.000 - - - no_errors 141 0 0.00 413 49 10.61 9 0 0.00 OGDHL 0 genome.wustl.edu 36 10 50636573 50636573 + Silent SNP G G A TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 10 50636573 50636573 G A SNP OGDHL NM_018245.1 human genbank 54_36p -1 validated silent c.72 p.V24 0.001 NULL HMMPfam_E1_dh,HMMPfam_Transket_pyr,superfamily_SSF52518 - no_errors 36 0 0.00 20 8 28.57 NA NA NA PTPN5 0 genome.wustl.edu 36 11 18718847 18718847 + Missense_Mutation SNP T T C TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 11 18718847 18718847 T C SNP PTPN5 NM_006906.1 human genbank 54_36p -1 validated missense c.794 p.Y265C 0.865 NULL HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II - no_errors 139 0 0.00 87 32 26.89 NA NA NA ANO2 0 genome.wustl.edu 36 12 5542827 5542827 + Missense_Mutation SNP C C A TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 C C C A C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 12 5542827 5542827 C A SNP ANO2 NM_020373.2 human genbank 54_36p -1 validated missense c.2899 p.G967C 0.000 NULL HMMPfam_DUF590 - no_errors 379 0 0.00 96 57 37.01 NA NA NA GUCY2C 0 genome.wustl.edu 36 12 14689506 14689506 + Missense_Mutation SNP T T A TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 T T T A T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 12 14689506 14689506 T A SNP GUCY2C NM_004963.3 human genbank 54_36p -1 validated missense c.1721 p.N574I 1.000 HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMSmart_SM00219,HMMPfam_ANF_receptor,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,PatternScan_GUANYLATE_CYCLASE_1,superfamily_Periplasmic binding protein-like I - no_errors 165 0 0.00 89 51 36.43 NA NA NA RFC3 0 genome.wustl.edu 36 13 33307285 33307285 + Silent SNP G G A TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 13 33307285 33307285 G A SNP RFC3 NM_002915.3 human genbank 54_36p +1 reviewed silent c.810 p.R270 0.995 superfamily_DNA polymerase III clamp loader subunits C-terminal domain,HMMPfam_RFC-E_C HMMSmart_SM00382,superfamily_DNA polymerase III clamp loader subunits C-terminal domain,HMMPfam_RFC-E_C,superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors 35 0 0.00 33 21 38.89 14 11 44.00 TBC1D21 0 genome.wustl.edu 36 15 71964459 71964459 + Missense_Mutation SNP G G C TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 G G G C G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 15 71964459 71964459 G C SNP TBC1D21 NM_153356.1 human genbank 54_36p +1 provisional missense c.541 p.E181Q 1.000 HMMSmart_TBC,superfamily_RabGAP_TBC HMMSmart_TBC,superfamily_RabGAP_TBC - no_errors 164 3 1.78 75 44 36.97 NA NA NA CLEC18B 0 genome.wustl.edu 36 16 73002259 73002259 + Missense_Mutation SNP T T C TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 16 73002259 73002259 T C SNP CLEC18B ENST00000268492 human ensembl 54_36p -1 known missense c.17 p.D6G 0.000 NULL HMMPfam_Lectin_C,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1 - no_start_codon 18 2 10.00 2 8 80.00 0 1 100.00 TP53 0 genome.wustl.edu 36 17 7520037 7520037 + Silent SNP C C T rs55863639 TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 17 7520037 7520037 C T SNP TP53 NM_000546.4 human genbank 54_36p -1 reviewed silent c.375 p.T125 1.000 superfamily_p53-like transcription factors,HMMPfam_P53 PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD - no_errors 283 0 0.00 42 63 60.00 4 42 91.30 KIF2B 0 genome.wustl.edu 36 17 49255533 49255533 + Missense_Mutation SNP C C T TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 17 49255533 49255533 C T SNP KIF2B NM_032559.4 human genbank 54_36p +1 validated missense c.140 p.T47M 0.977 NULL HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors 86 0 0.00 36 32 47.06 NA NA NA PDE4A 0 genome.wustl.edu 36 19 10389494 10389494 + Silent SNP G G T TCGA-AB-2838-03A-01W-0726-08 TCGA-AB-2838-11A-01W-0727-08 G G G T G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 5d0e7904-586a-4207-96aa-97c8daf3dd61 a9294e38-8585-47e2-b596-da4bb222433a 19 10389494 10389494 G T SNP PDE4A ENST00000380702 human ensembl 54_36p +1 known silent c.207 p.P69 0.941 NULL HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_HDc,superfamily_SSF109604 - no_errors 76 0 0.00 32 16 33.33 NA NA NA