Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
CROCC	0	genome.wustl.edu	36	1	17123487	17123487	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6e60054b-790c-4e57-a6cf-e6d166991cf3	8669a6af-fd9d-454a-8a97-87c683093614	1	17123487	17123487	G	A	SNP	CROCC	NM_014675.3	human	genbank	54_36p	+1	validated	missense	c.277	p.V93M	0.916	NULL	superfamily_Prefoldin	-	no_errors	33	2	5.71	72	25	25.77	2	2	50.00
DNMT3A	0	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6e60054b-790c-4e57-a6cf-e6d166991cf3	8669a6af-fd9d-454a-8a97-87c683093614	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552.3	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors	44	16	26.23	58	61	51.26	12	25	67.57
STXBP5L	0	genome.wustl.edu	36	3	122580309	122580309	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6e60054b-790c-4e57-a6cf-e6d166991cf3	8669a6af-fd9d-454a-8a97-87c683093614	3	122580309	122580309	C	T	SNP	STXBP5L	NM_014980.2	human	genbank	54_36p	+1	validated	missense	c.2305	p.R769C	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors	105	15	12.40	48	34	41.46	NA	NA	NA
ADCY5	0	genome.wustl.edu	36	3	124554003	124554003	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6e60054b-790c-4e57-a6cf-e6d166991cf3	8669a6af-fd9d-454a-8a97-87c683093614	3	124554003	124554003	G	A	SNP	ADCY5	NM_183357.1	human	genbank	54_36p	-1	validated	missense	c.1250	p.A417V	0.999	NULL	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors	58	4	6.35	43	32	42.67	NA	NA	NA
SYT15	0	genome.wustl.edu	36	10	46388671	46388671	+	Silent	SNP	G	G	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6e60054b-790c-4e57-a6cf-e6d166991cf3	8669a6af-fd9d-454a-8a97-87c683093614	10	46388671	46388671	G	A	SNP	SYT15	NM_031912.3	human	genbank	54_36p	-1	reviewed	silent	c.271	p.L91	0.005	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),PatternScan_CNMP_BINDING_1	-	no_errors	26	2	7.14	92	25	21.37	1	0	0.00
TSGA10IP	0	genome.wustl.edu	36	11	65472142	65472142	+	Silent	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6e60054b-790c-4e57-a6cf-e6d166991cf3	8669a6af-fd9d-454a-8a97-87c683093614	11	65472142	65472142	C	T	SNP	TSGA10IP	NM_152762.2	human	genbank	54_36p	+1	validated	silent	c.1098	p.F366	0.005	NULL	NULL	-	pseudogene	143	14	8.86	107	56	34.36	NA	NA	NA
DNAH10	0	genome.wustl.edu	36	12	122863982	122863982	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6e60054b-790c-4e57-a6cf-e6d166991cf3	8669a6af-fd9d-454a-8a97-87c683093614	12	122863982	122863982	C	T	SNP	DNAH10	NM_207437.3	human	genbank	54_36p	+1	validated	missense	c.2563	p.R855C	0.078	NULL	HMMPfam_DHC_N1	-	no_errors	154	25	13.81	107	78	42.16	NA	NA	NA
CBFB	0	genome.wustl.edu	36	16	65628109	65628109	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6e60054b-790c-4e57-a6cf-e6d166991cf3	8669a6af-fd9d-454a-8a97-87c683093614	16	65628109	65628109	C	T	SNP	CBFB	NM_022845.2	human	genbank	54_36p	+1	reviewed	nonsense	c.232	p.R78*	1.000	HMMPfam_CBF_beta,superfamily_CBF_beta	HMMPfam_CBF_beta,superfamily_CBF_beta	-	no_errors	54	8	12.90	37	42	53.16	20	6	22.22
DNMT1	0	genome.wustl.edu	36	19	10148990	10148990	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6e60054b-790c-4e57-a6cf-e6d166991cf3	8669a6af-fd9d-454a-8a97-87c683093614	19	10148990	10148990	T	A	SNP	DNMT1	NM_001379.1	human	genbank	54_36p	-1	reviewed	missense	c.499	p.I167F	0.993	NULL	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_DNA_methylase,HMMPfam_zf-CXXC,HMMPfam_DMAP_binding,PatternScan_C5_MTASE_1,PatternScan_C5_MTASE_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors	173	25	12.56	64	68	51.52	97	54	35.76
PTPRT	0	genome.wustl.edu	36	20	40143967	40143967	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2833-03B-01W-0728-08	TCGA-AB-2833-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	6e60054b-790c-4e57-a6cf-e6d166991cf3	8669a6af-fd9d-454a-8a97-87c683093614	20	40143967	40143967	C	T	SNP	PTPRT	NM_133170.5	human	genbank	54_36p	-1	reviewed	missense	c.4298	p.R1433H	0.836	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_Immunoglobulin,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors	116	20	14.60	67	63	48.09	NA	NA	NA