Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error NormalRefReads_WU NormalVarReads_WU NormalVAF_WU TumorRefReads_WU TumorVarReads_WU TumorVAF_WU RNARefReads_WU RNAVarReads_WU RNAVAF_WU DNMT3A 0 genome.wustl.edu 36 2 25310746 25310746 + Missense_Mutation SNP C C T TCGA-AB-2809-03D-01W-0755-09 TCGA-AB-2809-11D-01W-0755-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d86f567d-84f8-4a95-af1d-5a26ada92830 158c65f7-cfad-4a5f-a81b-9d869cd45ac3 2 25310746 25310746 C T SNP DNMT3A NM_022552.3 human genbank 54_36p -1 reviewed missense c.2645 p.R882H 1.000 superfamily_S-adenosyl-L-methionine-dependent methyltransferases HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT - no_errors 906 223 19.70 65 41 38.32 NA NA NA STEAP2 0 genome.wustl.edu 36 7 89694251 89694251 + Nonsense_Mutation SNP C C T TCGA-AB-2809-03D-01W-0755-09 TCGA-AB-2809-11D-01W-0755-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d86f567d-84f8-4a95-af1d-5a26ada92830 158c65f7-cfad-4a5f-a81b-9d869cd45ac3 7 89694251 89694251 C T SNP STEAP2 NM_001040665.1 human genbank 54_36p +1 reviewed nonsense c.523 p.R175* 0.992 HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains HMMPfam_F420_oxidored,HMMPfam_Ferric_reduct,superfamily_NAD(P)-binding Rossmann-fold domains - no_errors 135 5 3.55 126 49 27.84 NA NA NA NIN 0 genome.wustl.edu 36 14 50293976 50293976 + Silent SNP T T C TCGA-AB-2809-03D-01W-0755-09 TCGA-AB-2809-11D-01W-0755-09 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d86f567d-84f8-4a95-af1d-5a26ada92830 158c65f7-cfad-4a5f-a81b-9d869cd45ac3 14 50293976 50293976 T C SNP NIN NM_020921.3 human genbank 54_36p -1 reviewed silent c.3522 p.E1174 0.902 NULL HMMPfam_efhand,superfamily_EF-hand - no_errors 202 16 7.34 124 66 34.55 NA NA NA NAPSA 0 genome.wustl.edu 36 19 55554088 55554088 + Missense_Mutation SNP C C T TCGA-AB-2809-03D-01W-0755-09 TCGA-AB-2809-11D-01W-0755-09 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d86f567d-84f8-4a95-af1d-5a26ada92830 158c65f7-cfad-4a5f-a81b-9d869cd45ac3 19 55554088 55554088 C T SNP NAPSA NM_004851.1 human genbank 54_36p -1 reviewed missense c.1027 p.V343I 1.000 HMMPfam_Asp,superfamily_Pept_Aspartic HMMPfam_Asp,PatternScan_ASP_PROTEASE,superfamily_Pept_Aspartic - no_errors 2523 74 2.85 73 30 29.13 NA NA NA NPM1 0 genome.wustl.edu 36 5 170770148 170770149 + Frame_Shift_Ins INS - - TCTG TCGA-AB-2809-03D-01W-0755-09 TCGA-AB-2809-11D-01W-0755-09 - - - TCTG - - Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq d86f567d-84f8-4a95-af1d-5a26ada92830 158c65f7-cfad-4a5f-a81b-9d869cd45ac3 5 170770148 170770149 - TCTG INS NPM1 NM_002520.1 human genbank 54_36p +1 validated frame_shift_ins c.859_860 p.W288fs 1.000:1.000 NULL HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain - no_errors NA NA NA NA NA NA NA NA NA