Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm TEKT2 27285 hgsc.bcm.edu hg19 1 36553152 36553152 + Missense_Mutation SNP A A T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . TEKT2 NM_014466 exon8 c.A968T p.Y323F GAACCTACCGGCC . 213.0 85.0 275.0 0.0 . 32 . . . none . . PASS Atlas-SNP RIMKLA 284716 hgsc.bcm.edu hg19 1 42875853 42875853 + Missense_Mutation SNP C C T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . RIMKLA NM_173642 exon4 c.C680T p.S227F ACTGCTCTCTCGG . 63.0 19.0 83.0 0.0 . 32 . . . none . . PASS Atlas-SNP MAST2 23139 hgsc.bcm.edu hg19 1 46501468 46501468 + Missense_Mutation SNP T T A novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . MAST2 NM_015112 exon29 c.T5127A p.S1709R ACCTAGTGCCCCC . 156.0 62.0 207.0 0.0 . 136 . . . none . . PASS Atlas-SNP L1TD1 54596 hgsc.bcm.edu hg19 1 62675664 62675664 + Missense_Mutation SNP G G T rs200931139 alternate_allele TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff .,1 L1TD1 NM_001164835 exon5 c.G1218T p.E406D GGAGGAGGAGGAA . 169.0 38.0 132.0 0.0 . 114 . . . alt . . PASS Atlas-SNP APH1A 51107 hgsc.bcm.edu hg19 1 150239509 150239509 + Missense_Mutation SNP A A T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . APH1A NM_016022 exon5 c.T575A p.L192Q ACCACCAGGCCCA . 189.0 67.0 188.0 0.0 . 21 . . . none . . PASS Atlas-SNP TMEM79 84283 hgsc.bcm.edu hg19 1 156261269 156261269 + Missense_Mutation SNP G G C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . TMEM79 NM_032323 exon4 c.G1065C p.W355C GATGTGGAACCTC . 50.0 19.0 70.0 0.0 . 43 . . . none . . PASS Atlas-SNP POU2F1 5451 hgsc.bcm.edu hg19 1 167343522 167343522 + Nonsense_Mutation SNP C C T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . POU2F1 NM_002697 exon6 c.C580T p.Q194X CCCATACAGATCG . 199.0 82.0 201.0 0.0 . 120 . . . none . . PASS Atlas-SNP QSOX1 5768 hgsc.bcm.edu hg19 1 180148011 180148011 + Missense_Mutation SNP G G C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . QSOX1 NM_002826 exon5 c.G598C p.G200R TACCTGGGTAGAG . 57.0 19.0 74.0 0.0 . 79 . . . none . . PASS Atlas-SNP M1AP 130951 hgsc.bcm.edu hg19 2 74802619 74802619 + Nonsense_Mutation SNP C C T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . . NM_138804 exon7 c.G1020A p.W340X CTCATCCCAGTCC . 80.0 30.0 86.0 0.0 . . . . . none . . PASS Atlas-SNP ACVR2A 92 hgsc.bcm.edu hg19 2 148677844 148677844 + Silent SNP T T A novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . ACVR2A NM_001616 exon8 c.T1008A p.A336A GACAGCTTGCATT . 95.0 30.0 149.0 0.0 . 125 . . . none . . PASS Atlas-SNP CRYGD 1421 hgsc.bcm.edu hg19 2 208988981 208988981 + Missense_Mutation SNP G G A rs200234608 TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff CRYGD,NS,neuroblastoma,0,1 CRYGD NM_006891 exon2 c.C107T p.A36V ACGCGCGCCGAGT . 125.0 5.0 146.0 0.0 . 18 . . . weak G|0.998;A|0.002 0.002 PASS Atlas-SNP CTDSP1 58190 hgsc.bcm.edu hg19 2 219268024 219268024 + Missense_Mutation SNP T T A novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . CTDSP1 NM_021198 exon6 c.T541A p.C181S GAGTCCTGCGTCT . 68.0 30.0 94.0 0.0 . 19 . . . none . . PASS Atlas-SNP NBEAL2 23218 hgsc.bcm.edu hg19 3 47038846 47038846 + Missense_Mutation SNP C C T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . NBEAL2 NM_015175 exon19 c.C2747T p.T916M CTGAAACGCATGA . 15.0 7.0 22.0 0.0 . 267 . . . none . . PASS Atlas-SNP BOD1L1 259282 hgsc.bcm.edu hg19 4 13616300 13616300 + Missense_Mutation SNP T T C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . . NM_148894 exon4 c.A694G p.R232G ACGCTCTCTCACT . 62.0 4.0 89.0 0.0 . . . . . none . . PASS Atlas-SNP COL25A1 84570 hgsc.bcm.edu hg19 4 109861784 109861784 + Missense_Mutation SNP C C G novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . COL25A1 NM_198721 exon9 c.G583C p.G195R GAGGCCCTGCCTG . 42.0 17.0 63.0 0.0 . 178 . . . none . . PASS Atlas-SNP TENM3 55714 hgsc.bcm.edu hg19 4 183674665 183674665 + Missense_Mutation SNP G G A novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . . NM_001080477 exon20 c.G3925A p.D1309N AAAGTTGACCAAA . 120.0 43.0 183.0 0.0 . . . . . none . . PASS Atlas-SNP FRG1 2483 hgsc.bcm.edu hg19 4 190878551 190878551 + Splice_Site SNP A A G novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff FRG1,NS,malignant_melanoma,0,1 FRG1 NM_004477 exon6 c.433-2A>G . TCACTTAGGGGAA . 92.0 6.0 91.0 1.0 . 76 . . . none . . PASS Atlas-SNP CHD1 1105 hgsc.bcm.edu hg19 5 98235232 98235232 + Missense_Mutation SNP A A T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . CHD1 NM_001270 exon7 c.T1037A p.M346K TTTTTCATTCCTC . 46.0 15.0 59.0 0.0 . 137 . . . none . . PASS Atlas-SNP SHROOM1 134549 hgsc.bcm.edu hg19 5 132160915 132160915 + Missense_Mutation SNP G G T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . SHROOM1 NM_133456 exon1 c.C918A p.S306R TGAAGCGCTCCGA . 71.0 20.0 89.0 0.0 . 35 . . . none . . PASS Atlas-SNP TMEM173 340061 hgsc.bcm.edu hg19 5 138856029 138856029 + Missense_Mutation SNP A A C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . TMEM173 NM_198282 exon8 c.T957G p.D319E GCTGTCATCTGCA . 49.0 10.0 58.0 0.0 . 19 . . . none . . PASS Atlas-SNP FGFR4 2264 hgsc.bcm.edu hg19 5 176523128 176523128 + Missense_Mutation SNP T T C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . FGFR4 NM_002011 exon14 c.T1892C p.F631S CTGACTTTGGGCT . 77.0 35.0 96.0 0.0 . 174 . . . none . . PASS Atlas-SNP GFPT2 9945 hgsc.bcm.edu hg19 5 179743359 179743359 + Missense_Mutation SNP A A G novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . GFPT2 NM_005110 exon13 c.T1255C p.F419L TGAAAAAGCAAAC . 122.0 38.0 151.0 0.0 . 74 . . . none . . PASS Atlas-SNP ATXN1 6310 hgsc.bcm.edu hg19 6 16327864 16327864 + Missense_Mutation SNP G G C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff .,1 ATXN1 NM_001128164 exon7 c.C678G p.H226Q GCTGAGGTGCTGC . 64.0 3.0 67.0 2.0 . 117 . . . none . . PASS Atlas-SNP HIST1H2AH 85235 hgsc.bcm.edu hg19 6 27115069 27115069 + Silent SNP G G A rs7756481 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . HIST1H2AH NM_080596 exon1 c.G162A p.A54A GGCTGCGGTGCTG . 142.0 8.0 131.0 0.0 . 26 . . . alt G|0.936;C|0.064 . PASS Atlas-SNP BEND3 57673 hgsc.bcm.edu hg19 6 107390745 107390745 + Silent SNP A A G novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . BEND3 NM_001080450 exon5 c.T1650C p.G550G GTCGGCACCGGGC . 34.0 12.0 40.0 0.0 . 70 . . . none . . PASS Atlas-SNP ZSCAN21 7589 hgsc.bcm.edu hg19 7 99661446 99661446 + Missense_Mutation SNP G G T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . ZSCAN21 NM_145914 exon4 c.G628T p.D210Y TCAGCAGATGAGC . 176.0 113.0 103.0 0.0 . 29 . . . none . . PASS Atlas-SNP UPK3BL 100134938 hgsc.bcm.edu hg19 7 102279605 102279605 + Missense_Mutation SNP T T G novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . UPK3BL NM_001114403 exon4 c.A527C p.E176A TTGGTTTCAGCCA . 625.0 41.0 452.0 0.0 . 6 . . . none . . PASS Atlas-SNP BRAF 673 hgsc.bcm.edu hg19 7 140507811 140507811 + Silent SNP T T C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . BRAF NM_004333 exon5 c.A660G p.E220E CAATTCTTCTCCA . 126.0 29.0 80.0 0.0 . 36346 . . . none . . PASS Atlas-SNP DUSP4 1846 hgsc.bcm.edu hg19 8 29197704 29197704 + Silent SNP G G A novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . DUSP4 NM_001394 exon2 c.C490T p.L164L CTGCCAGGGCCTT . 55.0 22.0 56.0 0.0 . 58 . . . none . . PASS Atlas-SNP VPS13B 157680 hgsc.bcm.edu hg19 8 100836128 100836128 + Silent SNP T T C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . VPS13B NM_017890 exon51 c.T9327C p.T3109T CAAGACTACAATA . 80.0 35.0 66.0 0.0 . 811 . . . none . . PASS Atlas-SNP GPSM1 26086 hgsc.bcm.edu hg19 9 139231429 139231429 + Missense_Mutation SNP G G T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . GPSM1 NM_015597 exon4 c.G478T p.G160C GCCAAAGGCAAGC . 107.0 49.0 142.0 0.0 . 50 . . . none . . PASS Atlas-SNP ANKRD16 54522 hgsc.bcm.edu hg19 10 5922267 5922267 + Nonsense_Mutation SNP G G A novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff ANKRD16,NS,carcinoma,0,2 ANKRD16 NM_001009941 exon6 c.C922T p.R308X CTGATCGATTTTT . 38.0 19.0 69.0 0.0 . 32 . . . none . . PASS Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 135012281 135012281 + Missense_Mutation SNP G G A novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . KNDC1 NM_152643 exon14 c.G2269A p.G757S GCCCAGGGCCGCC . 74.0 20.0 91.0 0.0 . 155 . . . none . . PASS Atlas-SNP GTF2H1 2965 hgsc.bcm.edu hg19 11 18382179 18382179 + Silent SNP T T C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . GTF2H1 NM_001142307 exon15 c.T1485C p.S495S GAAAAGTAATTTG . 44.0 17.0 66.0 0.0 . 35 . . . none . . PASS Atlas-SNP DAGLA 747 hgsc.bcm.edu hg19 11 61490356 61490356 + Silent SNP C C T rs374808753 TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . DAGLA NM_006133 exon4 c.C333T p.Y111Y CATCTACGCCATC . 67.0 27.0 85.0 0.0 . 109 . . . weak . . PASS Atlas-SNP INPPL1 3636 hgsc.bcm.edu hg19 11 71941503 71941503 + Silent SNP C C A novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . INPPL1 NM_001567 exon10 c.C1188A p.V396V CTTTGTCAGTGCC . 87.0 39.0 92.0 0.0 . 120 . . . none . . PASS Atlas-SNP FCHSD2 9873 hgsc.bcm.edu hg19 11 72700036 72700036 + Missense_Mutation SNP A A G novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . FCHSD2 NM_014824 exon6 c.T494C p.V165A TCTCGTACTGCAT . 78.0 31.0 94.0 0.0 . 106 . . . none . . PASS Atlas-SNP RSF1 51773 hgsc.bcm.edu hg19 11 77412208 77412208 + Missense_Mutation SNP G G T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . RSF1 NM_016578 exon6 c.C2066A p.S689Y ATGCCAGAGGTCT . 78.0 31.0 81.0 0.0 . 105 . . . none . . PASS Atlas-SNP ATM 472 hgsc.bcm.edu hg19 11 108213973 108213973 + Missense_Mutation SNP G G A novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . ATM NM_000051 exon57 c.G8293A p.G2765S CGAAGTGGTGTTC . 136.0 8.0 104.0 0.0 . 1657 . . . none . . PASS Atlas-SNP DLAT 1737 hgsc.bcm.edu hg19 11 111933142 111933142 + Silent SNP T T A novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . DLAT NM_001931 exon14 c.T1827A p.A609A TGTGGCTAGCATG . 50.0 11.0 56.0 0.0 . 39 . . . none . . PASS Atlas-SNP TMPRSS13 84000 hgsc.bcm.edu hg19 11 117789218 117789218 + Silent SNP C C T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . TMPRSS13 NM_001206790 exon2 c.G357A p.V119V AAGGTACACTCTG . 89.0 40.0 112.0 0.0 . 75 . . . none . . PASS Atlas-SNP KIF21A 55605 hgsc.bcm.edu hg19 12 39695383 39695383 + Silent SNP G G C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . KIF21A NM_001173464 exon37 c.C4830G p.V1610V GTTCCAGACTTTC . 243.0 123.0 226.0 1.0 . 238 . . . none . . PASS Atlas-SNP HDAC7 51564 hgsc.bcm.edu hg19 12 48181543 48181543 + Missense_Mutation SNP C C G novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . HDAC7 NM_015401 exon21 c.G2405C p.G802A AGACCTCCAGCCC . 134.0 68.0 151.0 0.0 . 71 . . . none . . PASS Atlas-SNP NAA16 79612 hgsc.bcm.edu hg19 13 41936177 41936177 + Missense_Mutation SNP C C T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . NAA16 NM_024561 exon13 c.C1421T p.S474F GAACATCTGCCAT . 63.0 22.0 65.0 0.0 . 74 . . . none . . PASS Atlas-SNP DCT 1638 hgsc.bcm.edu hg19 13 95121020 95121020 + Missense_Mutation SNP G G A novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . DCT NM_001129889 exon2 c.C575T p.S192F CTAACAGAATAAT . 44.0 17.0 54.0 0.0 . 186 . . . none . . PASS Atlas-SNP COL4A2 1284 hgsc.bcm.edu hg19 13 111082947 111082947 + Missense_Mutation SNP G G A novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . COL4A2 NM_001846 exon10 c.G641A p.G214E CTCCAGGGAGACC . 100.0 45.0 145.0 0.0 . 178 . . . none . . PASS Atlas-SNP PELI2 57161 hgsc.bcm.edu hg19 14 56746403 56746403 + Missense_Mutation SNP T T C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . PELI2 NM_021255 exon3 c.T217C p.C73R ATCAGCTGCAAAG . 44.0 17.0 47.0 0.0 . 55 . . . none . . PASS Atlas-SNP NOXRED1 122945 hgsc.bcm.edu hg19 14 77872299 77872299 + Missense_Mutation SNP C C A novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . NOXRED1 NM_001113475 exon5 c.G862T p.D288Y CAAAATCTGTTAA . 56.0 19.0 67.0 0.0 . 23 . . . none . . PASS Atlas-SNP EIF2AK4 440275 hgsc.bcm.edu hg19 15 40226434 40226434 + Missense_Mutation SNP A A G novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . EIF2AK4 NM_001013703 exon1 c.A38G p.D13G GCCGGGACGAGCC . 79.0 16.0 101.0 0.0 . 107 . . . none . . PASS Atlas-SNP FBN1 2200 hgsc.bcm.edu hg19 15 48780565 48780565 + Missense_Mutation SNP C C T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . FBN1 NM_000138 exon26 c.G3208A p.D1070N ACTGACCTGTGCA . 75.0 21.0 79.0 0.0 . 310 . . . none . . PASS Atlas-SNP CEP152 22995 hgsc.bcm.edu hg19 15 49031304 49031304 + Silent SNP G G A novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . CEP152 NM_001194998 exon27 c.C4275T p.N1425N CTCTGAGTTCTCT . 74.0 30.0 85.0 0.0 . 145 . . . none . . PASS Atlas-SNP AGBL1 123624 hgsc.bcm.edu hg19 15 86790909 86790909 + Missense_Mutation SNP C C A rs370819428 alternate_allele TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . AGBL1 NM_152336 exon6 c.C396A p.N132K GTCGAACGGCCGC . 94.0 5.0 102.0 0.0 . 151 . . . alt . . PASS Atlas-SNP ZNF689 115509 hgsc.bcm.edu hg19 16 30616527 30616527 + Silent SNP G G T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . ZNF689 NM_138447 exon3 c.C561A p.S187S TGGATAGGAAAAG . 79.0 26.0 125.0 0.0 . 48 . . . none . . PASS Atlas-SNP MYH1 4619 hgsc.bcm.edu hg19 17 10404987 10404987 + Missense_Mutation SNP A A T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . MYH1 NM_005963 exon26 c.T3272A p.M1091K CCGCTCATTTCAA . 129.0 80.0 151.0 0.0 . 403 . . . none . . PASS Atlas-SNP PHF12 57649 hgsc.bcm.edu hg19 17 27251300 27251300 + Silent SNP C C T rs200428291 alternate_allele TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . PHF12 NM_020889 exon4 c.G342A p.E114E ACCCAGCTCCTTT . 86.0 22.0 53.0 0.0 . 69 . . . alt C|0.999;G|0.001 . PASS Atlas-SNP NBR1 4077 hgsc.bcm.edu hg19 17 41341718 41341718 + Silent SNP T T C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . NBR1 NM_031862 exon8 c.T594C p.P198P AATGCCTACTTCA . 123.0 23.0 114.0 0.0 . 55 . . . none . . PASS Atlas-SNP SLC4A1 6521 hgsc.bcm.edu hg19 17 42335164 42335164 + Missense_Mutation SNP G G A rs373768879 TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . SLC4A1 NM_000342 exon12 c.C1294T p.R432W GGTTCCGGGTCTT . 105.0 66.0 82.0 0.0 . 104 . . . weak . . PASS Atlas-SNP PSMG2 56984 hgsc.bcm.edu hg19 18 12720515 12720515 + Silent SNP C C T novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . PSMG2 NM_020232 exon5 c.C414T p.P138P TACTCCCTTCCGG . 94.0 4.0 118.0 0.0 . 17 . . . none . . PASS Atlas-SNP DEFB116 245930 hgsc.bcm.edu hg19 20 29891079 29891079 + Missense_Mutation SNP T T C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . DEFB116 NM_001037731 exon2 c.A245G p.K82R TCCTCCTTCACAT . 76.0 28.0 124.0 0.0 . 18 . . . none . . PASS Atlas-SNP DEFB116 245930 hgsc.bcm.edu hg19 20 29891080 29891080 + Missense_Mutation SNP T T C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . DEFB116 NM_001037731 exon2 c.A244G p.K82E CCTCCTTCACATT . 77.0 29.0 121.0 0.0 . 18 . . . none . . PASS Atlas-SNP CBFA2T2 9139 hgsc.bcm.edu hg19 20 32199106 32199106 + Missense_Mutation SNP G G C novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . CBFA2T2 NM_005093 exon4 c.G412C p.G138R GAGATTGGGGAGA . 80.0 32.0 83.0 0.0 . 93 . . . none . . PASS Atlas-SNP AMER1 139285 hgsc.bcm.edu hg19 X 63411064 63411064 + Silent SNP C C G novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . . NM_152424 exon2 c.G2103C p.L701L CTTCTCCAGAGGA . 60.0 49.0 75.0 0.0 . . . . . none . . PASS Atlas-SNP RPL36A-HNRNPH2 0 hgsc.bcm.edu hg19 X 100650416 100650416 + Missense_Mutation SNP T T G novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . . NM_001199973 exon4 c.T379G p.F127V AAGCATTTTGAAC . 115.0 87.0 118.0 0.0 . . . . . none . . PASS Atlas-SNP ENOX2 10495 hgsc.bcm.edu hg19 X 129822852 129822852 + Missense_Mutation SNP A A G novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . ENOX2 NM_182314 exon6 c.T325C p.F109L GAGGGAAGAGCGT . 53.0 38.0 49.0 0.0 . 70 . . . none . . PASS Atlas-SNP ACOT11 26027 hgsc.bcm.edu hg19 1 55060319 55060319 + Frame_Shift_Del DEL G G - novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . ACOT11 NM_147161 exon6 c.561delT p.Y187X . . 166.0 59.0 175.0 0.0 . 105 . 0.355422 0 none . . PASS Atlas-Indel,Pindel TTYH3 80727 hgsc.bcm.edu hg19 7 2686778 2686778 + Frame_Shift_Del DEL C C - novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . TTYH3 NM_025250 exon3 c.295delG p.A99fs . . 74.0 40.0 54.0 0.0 . 36 . 0.540541 0 none . . PASS Atlas-Indel,Pindel ABCA12 26154 hgsc.bcm.edu hg19 2 215820066 215820067 + Frame_Shift_Del DEL TC TC - novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 TC TC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . ABCA12 NM_173076 exon43 c.6253_6254del p.2085_2085del . . 253.0 95.0 299.0 0.0 . 368 . 0.375494 0 none . . PASS Atlas-Indel,Pindel NCOA2 10499 hgsc.bcm.edu hg19 8 71068654 71068654 + Frame_Shift_Del DEL G G - novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . NCOA2 NM_006540 exon11 c.1947delT p.S649fs . . 54.0 27.0 75.0 0.0 . 147 . 0.5 0 none . . PASS Atlas-Indel,Pindel PGM1 5236 hgsc.bcm.edu hg19 1 64125282 64125282 + Frame_Shift_Del DEL T T - novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . PGM1 NM_001172818 exon11 c.1678delA p.I560fs . . 77.0 22.0 110.0 0.0 . 75 . 0.285714 0 none . . PASS Atlas-Indel,Pindel ADAD1 132612 hgsc.bcm.edu hg19 4 123333812 123333812 + Frame_Shift_Del DEL T T - novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . ADAD1 NM_139243 exon10 c.1096delA p.I366fs . . 90.0 41.0 108.0 0.0 . 94 . 0.455556 0 none . . PASS Atlas-Indel,Pindel MYL12B 103910 hgsc.bcm.edu hg19 18 3272961 3272961 + Frame_Shift_Del DEL T T - novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . MYL12B NM_033546 exon2 c.64delG p.V22fs . . 157.0 58.0 201.0 0.0 . 11 . 0.369427 0 none . . PASS Atlas-Indel,Pindel COL6A5 256076 hgsc.bcm.edu hg19 3 130120011 130120011 + Frame_Shift_Del DEL G G - novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . COL6A5 NM_153264 exon11 c.4127delA p.Q1376fs . . 137.0 49.0 206.0 0.0 . 205 . 0.357664 0 none . . PASS Atlas-Indel,Pindel ADAMTS6 11174 hgsc.bcm.edu hg19 5 64510676 64510682 + Frame_Shift_Del DEL AACTTCA AACTTCA - novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 AACTTCA AACTTCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . ADAMTS6 NM_197941 exon20 c.2515_2521del p.839_841del . . 77.0 17.0 121.0 0.0 . 174 . 0.220779 0 none . . PASS Atlas-Indel,Pindel ZBTB8B 728116 hgsc.bcm.edu hg19 1 32936383 32936393 + Frame_Shift_Del DEL TCATTCACTAT TCATTCACTAT - novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 TCATTCACTAT TCATTCACTAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . ZBTB8B NM_001145720 exon2 c.157_167del p.53_56del . . 86.0 23.0 99.0 0.0 . 28 . 0.267442 0 none . . PASS Atlas-Indel,Pindel PHF3 23469 hgsc.bcm.edu hg19 6 64404652 64404653 + Frame_Shift_Ins INS - - AGGT novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . PHF3 NM_015153 exon5 c.2678_2679insAGGT p.P893fs . . 199.0 34.0 266.0 0.0 . 191 . 0.171 . none . . PASS Pindel GXYLT1 283464 hgsc.bcm.edu hg19 12 42538257 42538295 + In_Frame_Del DEL GCCCGCGACGCCGGCGCCTCTCACGGCGCCGCGTCCGCC GCCCGCGACGCCGGCGCCTCTCACGGCGCCGCGTCCGCC - novel TCGA-Y8-A8RY-01A-11D-A36X-10 TCGA-Y8-A8RY-10A-01D-A370-10 GCCCGCGACGCCGGCGCCTCTCACGGCGCCGCGTCCGCC GCCCGCGACGCCGGCGCCTCTCACGGCGCCGCGTCCGCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fbd6df33-90cf-4c79-bf0c-9f5bd762c16f 7a66b4e5-8f59-4d6e-b6dc-58884cf787ff . GXYLT1 NM_001099650 exon1 c.155_193del p.52_65del . . 8.0 11.0 7.0 0.0 . 47 . 1.375 . none . . PASS Pindel