Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm MMEL1 79258 hgsc.bcm.edu hg19 1 2560821 2560821 + Missense_Mutation SNP G G C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . MMEL1 NM_033467 exon2 c.C103G p.L35V TCACCAGCAGCAG . 211.0 10.0 137.0 0.0 . 64 . . . none . . PASS Atlas-SNP RNF19B 127544 hgsc.bcm.edu hg19 1 33429684 33429684 + Silent SNP G G T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . RNF19B NM_001127361 exon1 c.C603A p.P201P GCAGTCGGGGTCC . 94.0 44.0 85.0 0.0 . 43 . . . none . . PASS Atlas-SNP MOV10 4343 hgsc.bcm.edu hg19 1 113237494 113237494 + Silent SNP C C A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . MOV10 NM_020963 exon10 c.C1596A p.V532V GACTGTCACGTTA . 202.0 86.0 139.0 0.0 . 74 . . . none . . PASS Atlas-SNP LCE4A 199834 hgsc.bcm.edu hg19 1 152681689 152681689 + Silent SNP G G C rs200223098 bycluster TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a .,2 LCE4A NM_178356 exon1 c.G138C p.G46G CTCTGGGGGCTGT . 241.0 66.0 132.0 0.0 . 37 . . . weak G|0.999;C|0.001 0.001 PASS Atlas-SNP RGS4 5999 hgsc.bcm.edu hg19 1 163039075 163039075 + Missense_Mutation SNP G G C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . RGS4 NM_001102445 exon2 c.G92C p.G31A GAGCTGGTACTGC . 231.0 105.0 141.0 0.0 . 97 . . . none . . PASS Atlas-SNP GREB1 9687 hgsc.bcm.edu hg19 2 11725936 11725936 + Missense_Mutation SNP C C T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . GREB1 NM_148903 exon9 c.C1064T p.A355V GACCAGCTTCAGT . 178.0 79.0 133.0 0.0 . 308 . . . none . . PASS Atlas-SNP RGPD4 285190 hgsc.bcm.edu hg19 2 108488143 108488143 + Missense_Mutation SNP C C T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . RGPD4 NM_182588 exon20 c.C3683T p.A1228V CAGGTGCGGCCGG . 227.0 92.0 141.0 0.0 . 112 . . . none . . PASS Atlas-SNP PSD4 23550 hgsc.bcm.edu hg19 2 113956437 113956437 + Silent SNP C C A rs369985754 alternate_allele TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . PSD4 NM_012455 exon15 c.C2745A p.P915P CCTGCCCGTGGGC . 52.0 31.0 44.0 0.0 . 74 . . . alt . . PASS Atlas-SNP METTL21A 151194 hgsc.bcm.edu hg19 2 208486600 208486600 + Silent SNP C C T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . METTL21A NM_145280 exon3 c.G189A p.E63E CCTGAGCTCCACA . 161.0 11.0 128.0 0.0 . 24 . . . none . . PASS Atlas-SNP ESPNL 339768 hgsc.bcm.edu hg19 2 239039152 239039152 + Silent SNP G G A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . ESPNL NM_194312 exon9 c.G1797A p.L599L CCGCCTGGTACGC . 119.0 62.0 105.0 0.0 . 63 . . . none . . PASS Atlas-SNP ESPNL 339768 hgsc.bcm.edu hg19 2 239039153 239039153 + Missense_Mutation SNP G G T rs199652360 by1000genomes;alternate_allele TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . ESPNL NM_194312 exon9 c.G1798T p.V600L CGCCTGGTACGCA . 122.0 64.0 106.0 0.0 . 63 . . . alt G|1.000;C|0.000 . PASS Atlas-SNP KIF1A 547 hgsc.bcm.edu hg19 2 241696843 241696843 + Missense_Mutation SNP C C A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . KIF1A NM_001244008 exon27 c.G2751T p.E917D CTCATCCTCCTCC . 150.0 12.0 86.0 0.0 . 152 . . . none . . PASS Atlas-SNP FBLN2 2199 hgsc.bcm.edu hg19 3 13611885 13611885 + Silent SNP C C A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . FBLN2 NM_001998 exon2 c.C30A p.A10A AGGAGCCTGGCTT . 83.0 44.0 47.0 0.0 . 137 . . . none . . PASS Atlas-SNP MON1A 84315 hgsc.bcm.edu hg19 3 49949382 49949382 + Nonsense_Mutation SNP C C A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . MON1A NM_032355 exon3 c.G481T p.E161X CATCCTCTGACTC . 106.0 47.0 70.0 0.0 . 41 . . . none . . PASS Atlas-SNP C3orf38 285237 hgsc.bcm.edu hg19 3 88205465 88205465 + Missense_Mutation SNP T T A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . C3orf38 NM_173824 exon3 c.T670A p.C224S CTGAAATGTGCAT . 164.0 80.0 75.0 0.0 . 29 . . . none . . PASS Atlas-SNP KIAA2018 205717 hgsc.bcm.edu hg19 3 113377181 113377181 + Silent SNP T T A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . KIAA2018 NM_001009899 exon7 c.A3348T p.A1116A AGTTGTTGCATTG . 92.0 48.0 55.0 0.0 . 180 . . . none . . PASS Atlas-SNP ZNF148 7707 hgsc.bcm.edu hg19 3 125032253 125032253 + Missense_Mutation SNP C C T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . ZNF148 NM_021964 exon4 c.G232A p.D78N GTTCATCATGTGA . 152.0 72.0 83.0 0.0 . 84 . . . none . . PASS Atlas-SNP PSMD2 5708 hgsc.bcm.edu hg19 3 184025149 184025149 + Missense_Mutation SNP G G C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . PSMD2 NM_002808 exon17 c.G2039C p.R680T AGCTGAGATATGG . 75.0 42.0 56.0 0.0 . 56 . . . none . . PASS Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195505805 195505805 + Missense_Mutation SNP A A C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . MUC4 NM_018406 exon2 c.T12646G p.S4216A ATGCTGAGGAAGT . 146.0 8.0 114.0 0.0 . 1505 . . . none . . PASS Atlas-SNP GALNTL6 442117 hgsc.bcm.edu hg19 4 173961238 173961238 + Missense_Mutation SNP A A G novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . GALNTL6 NM_001034845 exon13 c.A1793G p.H598R ACCACCATGCCAA . 98.0 48.0 90.0 0.0 . 102 . . . none . . PASS Atlas-SNP GALNT7 51809 hgsc.bcm.edu hg19 4 174239640 174239640 + Missense_Mutation SNP G G C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . GALNT7 NM_017423 exon11 c.G1766C p.G589A CAAAGGGAGCTGA . 205.0 99.0 156.0 0.0 . 61 . . . none . . PASS Atlas-SNP TENM3 55714 hgsc.bcm.edu hg19 4 183245238 183245238 + Missense_Mutation SNP G G A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . . NM_001080477 exon1 c.G65A p.R22H AACGGCGCTACAC . 129.0 65.0 97.0 0.0 . . . . . none . . PASS Atlas-SNP TLR3 7098 hgsc.bcm.edu hg19 4 187004353 187004353 + Missense_Mutation SNP C C A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . TLR3 NM_003265 exon4 c.C1513A p.L505I CAGCCTCTTCGTA . 152.0 63.0 111.0 0.0 . 83 . . . none . . PASS Atlas-SNP PCDHB2 56133 hgsc.bcm.edu hg19 5 140476411 140476411 + Silent SNP A A C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a PCDHB2,NS,carcinoma,0,1 PCDHB2 NM_018936 exon1 c.A2037C p.A679A GGCGGCACCGGCC . 127.0 7.0 66.0 1.0 . 163 . . . none . . PASS Atlas-SNP DCTN4 51164 hgsc.bcm.edu hg19 5 150133041 150133041 + Missense_Mutation SNP C C A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . DCTN4 NM_016221 exon3 c.G385T p.A129S ACTCACCTACAGA . 66.0 30.0 48.0 0.0 . 35 . . . none . . PASS Atlas-SNP ITK 3702 hgsc.bcm.edu hg19 5 156671455 156671455 + Nonsense_Mutation SNP C C A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . ITK NM_005546 exon13 c.C1416A p.Y472X GGCCTACCTGGAA . 80.0 41.0 46.0 0.0 . 136 . . . none . . PASS Atlas-SNP FLT4 2324 hgsc.bcm.edu hg19 5 180045796 180045796 + Missense_Mutation SNP G G A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . FLT4 NM_182925 exon21 c.C2975T p.A992V CGCCTCGCTCCGC . 88.0 47.0 71.0 0.0 . 356 . . . none . . PASS Atlas-SNP TJAP1 93643 hgsc.bcm.edu hg19 6 43466745 43466745 + Silent SNP T T C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . TJAP1 NM_080604 exon4 c.T6C p.T2T AATGACTAGTGCC . 69.0 40.0 30.0 0.0 . 35 . . . none . . PASS Atlas-SNP STX11 8676 hgsc.bcm.edu hg19 6 144508308 144508308 + Nonsense_Mutation SNP G G T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . STX11 NM_003764 exon2 c.G544T p.E182X ATGTTCGAGCAGG . 118.0 61.0 109.0 0.0 . 34 . . . none . . PASS Atlas-SNP PLEKHG1 57480 hgsc.bcm.edu hg19 6 151054930 151054930 + Missense_Mutation SNP G G A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . PLEKHG1 NM_001029884 exon3 c.G113A p.S38N CAAATAGCCACAT . 118.0 59.0 82.0 0.0 . 97 . . . none . . PASS Atlas-SNP RSPH3 83861 hgsc.bcm.edu hg19 6 159420999 159420999 + Missense_Mutation SNP T T C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . RSPH3 NM_031924 exon1 c.A10G p.K4E CTGGCTTGACCGT . 175.0 82.0 104.0 0.0 . 48 . . . none . . PASS Atlas-SNP CAMK2B 816 hgsc.bcm.edu hg19 7 44268995 44268995 + Missense_Mutation SNP G G T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . CAMK2B NM_001220 exon18 c.C1331A p.P444Q GGGGCTGGCAGGG . 456.0 231.0 314.0 0.0 . 56 . . . none . . PASS Atlas-SNP STEAP4 79689 hgsc.bcm.edu hg19 7 87912402 87912402 + Missense_Mutation SNP G G T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . STEAP4 NM_001205315 exon4 c.C538A p.Q180K ATCCTTGATCCAT . 101.0 57.0 78.0 0.0 . 54 . . . none . . PASS Atlas-SNP LAMB1 3912 hgsc.bcm.edu hg19 7 107577548 107577548 + Silent SNP T T A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . LAMB1 NM_002291 exon26 c.A3936T p.S1312S AATATCTGAGTTT . 101.0 50.0 78.0 0.0 . 185 . . . none . . PASS Atlas-SNP ZNF395 55893 hgsc.bcm.edu hg19 8 28209284 28209284 + Missense_Mutation SNP A A C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . ZNF395 NM_018660 exon7 c.T961G p.F321V AGTAGAAATCCTC . 14.0 7.0 7.0 0.0 . 54 . . . none . . PASS Atlas-SNP PKHD1L1 93035 hgsc.bcm.edu hg19 8 110477416 110477416 + Missense_Mutation SNP G G T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . PKHD1L1 NM_177531 exon49 c.G8355T p.K2785N GAACAAGGCTGGC . 185.0 83.0 125.0 0.0 . 522 . . . none . . PASS Atlas-SNP FAM91A1 157769 hgsc.bcm.edu hg19 8 124786386 124786386 + Nonsense_Mutation SNP C C T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . FAM91A1 NM_144963 exon2 c.C139T p.R47X CAGTTACGATATA . 134.0 46.0 91.0 0.0 . 77 . . . none . . PASS Atlas-SNP FAM122A 116224 hgsc.bcm.edu hg19 9 71395705 71395705 + Missense_Mutation SNP G G A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . FAM122A NM_138333 exon1 c.G625A p.E209K GAAATGGAAACTG . 127.0 59.0 85.0 0.0 . 14 . . . none . . PASS Atlas-SNP KIF27 55582 hgsc.bcm.edu hg19 9 86495384 86495384 + Missense_Mutation SNP C C A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . KIF27 NM_017576 exon11 c.G2471T p.S824I TTCTTACTATCTT . 26.0 13.0 27.0 0.0 . 103 . . . none . . PASS Atlas-SNP LHX6 26468 hgsc.bcm.edu hg19 9 124979514 124979514 + Missense_Mutation SNP C C A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . LHX6 NM_014368 exon5 c.G515T p.W172L CGCACCCAGTCGC . 143.0 91.0 64.0 0.0 . 73 . . . none . . PASS Atlas-SNP MAPKAP1 79109 hgsc.bcm.edu hg19 9 128230280 128230280 + Missense_Mutation SNP G G A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . MAPKAP1 NM_001006617 exon10 c.C1316T p.A439V TCACAGGCACAGA . 227.0 66.0 82.0 0.0 . 68 . . . none . . PASS Atlas-SNP PITRM1 10531 hgsc.bcm.edu hg19 10 3208566 3208566 + Silent SNP C C T rs114690446 bycluster TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a PITRM1,colon,carcinoma,-1,3 PITRM1 NM_014889 exon4 c.G273A p.Q91Q ACGGAACTGCACG . 58.0 6.0 48.0 0.0 . 109 . . . weak . . PASS Atlas-SNP PITRM1 10531 hgsc.bcm.edu hg19 10 3208567 3208567 + Missense_Mutation SNP T T G rs28416720 bycluster TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a PITRM1,colon,carcinoma,0,3 PITRM1 NM_014889 exon4 c.A272C p.Q91P CGGAACTGCACGC . 57.0 6.0 47.0 0.0 . 109 . . . weak . . PASS Atlas-SNP ANK3 288 hgsc.bcm.edu hg19 10 61868591 61868591 + Nonsense_Mutation SNP A A T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . ANK3 NM_001204404 exon28 c.T3173A p.L1058X TACCCTAAAAATT . 145.0 66.0 101.0 0.0 . 703 . . . none . . PASS Atlas-SNP VCL 7414 hgsc.bcm.edu hg19 10 75877813 75877813 + Missense_Mutation SNP C C G novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . VCL NM_014000 exon22 c.C3291G p.N1097K CCAGAACCTCATG . 104.0 51.0 68.0 0.0 . 77 . . . none . . PASS Atlas-SNP RRP12 23223 hgsc.bcm.edu hg19 10 99120318 99120318 + Missense_Mutation SNP G G A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . RRP12 NM_015179 exon31 c.C3625T p.P1209S GAGGGGGTATCTC . 69.0 37.0 36.0 0.0 . 97 . . . none . . PASS Atlas-SNP RRP12 23223 hgsc.bcm.edu hg19 10 99126540 99126540 + Silent SNP C C T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . RRP12 NM_015179 exon27 c.G3174A p.E1058E CTCCTCCTCTTCT . 69.0 6.0 32.0 0.0 . 97 . . . none . . PASS Atlas-SNP GBF1 8729 hgsc.bcm.edu hg19 10 104136491 104136491 + Missense_Mutation SNP A A G novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . GBF1 NM_001199378 exon32 c.A4222G p.T1408A CACATCACACCTG . 48.0 26.0 29.0 0.0 . 142 . . . none . . PASS Atlas-SNP SCAF11 9169 hgsc.bcm.edu hg19 12 46327006 46327006 + Silent SNP A A G novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . SCAF11 NM_004719 exon9 c.T642C p.F214F TTCTATAAATTCT . 67.0 23.0 33.0 0.0 . 145 . . . none . . PASS Atlas-SNP GRASP 160622 hgsc.bcm.edu hg19 12 52401044 52401044 + Nonsense_Mutation SNP C C T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . GRASP NM_181711 exon1 c.C241T p.R81X CCCCGCCGAAAGG . 71.0 35.0 38.0 0.0 . 23 . . . none . . PASS Atlas-SNP ANKS1B 56899 hgsc.bcm.edu hg19 12 99478796 99478796 + Silent SNP G G A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . ANKS1B NM_152788 exon16 c.C2532T p.S844S AACATTGCTTCCC . 131.0 55.0 70.0 0.0 . 180 . . . none . . PASS Atlas-SNP CCDC63 160762 hgsc.bcm.edu hg19 12 111345141 111345141 + Missense_Mutation SNP A A T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . CCDC63 NM_152591 exon12 c.A1553T p.Q518L TGGAACAGCCCCT . 48.0 25.0 40.0 0.0 . 89 . . . none . . PASS Atlas-SNP WDR66 144406 hgsc.bcm.edu hg19 12 122406042 122406042 + Missense_Mutation SNP A A G novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . WDR66 NM_001178003 exon17 c.A2738G p.D913G GGCACGATCGCTC . 120.0 72.0 69.0 0.0 . 143 . . . none . . PASS Atlas-SNP SHISA2 387914 hgsc.bcm.edu hg19 13 26621071 26621071 + Silent SNP C C A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . SHISA2 NM_001007538 exon2 c.G468T p.G156G GTTACCCCCTGGG . 110.0 54.0 68.0 0.0 . 43 . . . none . . PASS Atlas-SNP TSC22D1 8848 hgsc.bcm.edu hg19 13 45149121 45149121 + Missense_Mutation SNP A A C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . TSC22D1 NM_183422 exon1 c.T1090G p.L364V CACTCAAGATATT . 77.0 44.0 53.0 0.0 . 88 . . . none . . PASS Atlas-SNP EDDM3A 10876 hgsc.bcm.edu hg19 14 21215972 21215972 + Missense_Mutation SNP G G C rs149270684 bycluster;byfrequency;alternate_allele TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . EDDM3A NM_006683 exon2 c.G233C p.R78P TTCAGCGTGCATG . 92.0 35.0 67.0 0.0 . 15 . . . alt G|0.999;A|0.001 . PASS Atlas-SNP PPP2R5E 5529 hgsc.bcm.edu hg19 14 63860645 63860645 + Missense_Mutation SNP T T A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . PPP2R5E NM_006246 exon8 c.A742T p.I248F TGATAATACTAGG . 83.0 40.0 47.0 0.0 . 43 . . . none . . PASS Atlas-SNP DDX24 57062 hgsc.bcm.edu hg19 14 94545834 94545834 + Silent SNP C C T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . DDX24 NM_020414 exon2 c.G255A p.E85E CTCCTCCTCTTCT . 91.0 4.0 61.0 0.0 . 82 . . . none . . PASS Atlas-SNP DICER1 23405 hgsc.bcm.edu hg19 14 95590600 95590600 + Missense_Mutation SNP G G C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . DICER1 NM_030621 exon9 c.C1309G p.P437A TAAAAGGAGAAGG . 74.0 42.0 47.0 0.0 . 181 . . . none . . PASS Atlas-SNP MYO5A 4644 hgsc.bcm.edu hg19 15 52615613 52615613 + Missense_Mutation SNP G G C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . MYO5A NM_000259 exon36 c.C4664G p.S1555C CAGAAGGAGACGG . 138.0 59.0 96.0 0.0 . 145 . . . none . . PASS Atlas-SNP CGNL1 84952 hgsc.bcm.edu hg19 15 57730578 57730578 + Silent SNP T T C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . CGNL1 NM_001252335 exon3 c.T381C p.N127N CAAGAATGGAGTT . 146.0 69.0 108.0 0.0 . 125 . . . none . . PASS Atlas-SNP LRRC49 54839 hgsc.bcm.edu hg19 15 71193333 71193333 + Missense_Mutation SNP T T C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . LRRC49 NM_001199017 exon4 c.T281C p.I94T AGAAAATTCTTTA . 297.0 144.0 160.0 0.0 . 73 . . . none . . PASS Atlas-SNP ARIH1 25820 hgsc.bcm.edu hg19 15 72874471 72874471 + Missense_Mutation SNP G G C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a ARIH1,face,carcinoma,0,1 ARIH1 NM_005744 exon13 c.G1532C p.R511P TTGAACGAGATAT . 318.0 149.0 225.0 0.0 . 42 . . . none . . PASS Atlas-SNP BLM 641 hgsc.bcm.edu hg19 15 91298123 91298123 + Missense_Mutation SNP A A G novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . BLM NM_000057 exon5 c.A1042G p.M348V GAGAAAATGAGTA . 103.0 49.0 63.0 0.0 . 122 . . . none . . PASS Atlas-SNP SNRPA1 6627 hgsc.bcm.edu hg19 15 101833253 101833253 + Silent SNP C C T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . SNRPA1 NM_003090 exon2 c.G207A p.L69L CACTAACAATGTT . 387.0 101.0 258.0 0.0 . 11 . . . none . . PASS Atlas-SNP AXIN1 8312 hgsc.bcm.edu hg19 16 343699 343699 + Missense_Mutation SNP G G A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . AXIN1 NM_181050 exon8 c.C1975T p.P659S GCTGTGGCTTCCT . 39.0 13.0 29.0 0.0 . 290 . . . none . . PASS Atlas-SNP TUSC5 286753 hgsc.bcm.edu hg19 17 1183315 1183315 + Missense_Mutation SNP C C A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . TUSC5 NM_172367 exon1 c.C20A p.S7Y TGCAGTCCGAGTT . 161.0 88.0 88.0 0.0 . 25 . . . none . . PASS Atlas-SNP MYH8 4626 hgsc.bcm.edu hg19 17 10315977 10315977 + Missense_Mutation SNP T T A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . MYH8 NM_002472 exon13 c.A1216T p.R406W TGACCCTAGGGTA . 213.0 104.0 120.0 0.0 . 346 . . . none . . PASS Atlas-SNP ERBB2 2064 hgsc.bcm.edu hg19 17 37880219 37880219 + Silent SNP T T C rs121913469 bycluster;alternate_allele TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a ERBB2,NS,carcinoma,-1,1 ERBB2 NM_004448 exon19 c.T2263C p.L755L AAAGTGTTGAGGG . 60.0 27.0 57.0 0.0 . 429 . . . alt . . PASS Atlas-SNP ERBB2 2064 hgsc.bcm.edu hg19 17 37880220 37880220 + Missense_Mutation SNP T T C rs121913470 TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a ERBB2,NS,carcinoma,0,20 ERBB2 NM_004448 exon19 c.T2264C p.L755S AAGTGTTGAGGGA . 60.0 27.0 56.0 0.0 . 429 . . . weak . . PASS Atlas-SNP RHBDF2 79651 hgsc.bcm.edu hg19 17 74473013 74473013 + Silent SNP C C T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . RHBDF2 NM_024599 exon9 c.G1101A p.R367R GTAGTGCCGCTTC . 135.0 62.0 81.0 0.0 . 57 . . . none . . PASS Atlas-SNP ZNF728 388523 hgsc.bcm.edu hg19 19 23159254 23159254 + Silent SNP C C T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . . NM_001267716 exon4 c.G885A p.K295K TGAGGCCTTACTA . 39.0 22.0 21.0 0.0 . . . . . none . . PASS Atlas-SNP ZNF814 730051 hgsc.bcm.edu hg19 19 58385790 58385790 + Missense_Mutation SNP G G T rs111727691 bycluster TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . ZNF814 NM_001144989 exon3 c.C968A p.P323H TCATAAGGTCTTT . 101.0 10.0 48.0 0.0 . 93 . . . weak G|0.500;T|0.500 0.500 PASS Atlas-SNP ZNF814 730051 hgsc.bcm.edu hg19 19 58385793 58385793 + Missense_Mutation SNP C C T rs113623532 bycluster TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . ZNF814 NM_001144989 exon3 c.G965A p.R322K TAAGGTCTTTTCC . 96.0 11.0 45.0 0.0 . 93 . . . weak C|0.500;T|0.500 0.500 PASS Atlas-SNP ZNF512B 57473 hgsc.bcm.edu hg19 20 62595674 62595674 + Silent SNP T T C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . ZNF512B NM_020713 exon7 c.A1332G p.K444K CTTACCTTTGAGC . 102.0 45.0 64.0 0.0 . 72 . . . none . . PASS Atlas-SNP DYRK1A 1859 hgsc.bcm.edu hg19 21 38878548 38878548 + Missense_Mutation SNP T T A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . DYRK1A NM_101395 exon12 c.T1693A p.L565M GTTCATTTGCTTG . 126.0 67.0 91.0 0.0 . 85 . . . none . . PASS Atlas-SNP GGT5 2687 hgsc.bcm.edu hg19 22 24622177 24622177 + Missense_Mutation SNP C C T rs372349468 TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . GGT5 NM_001099781 exon8 c.G1096A p.D366N GGCCATCGATCTG . 61.0 32.0 42.0 0.0 . 61 . . . weak . . PASS Atlas-SNP INPP5J 27124 hgsc.bcm.edu hg19 22 31529898 31529898 + Splice_Site SNP G G T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . INPP5J NM_001002837 exon13 c.1411-1G>T . CCCCCAGATCTCG . 105.0 59.0 86.0 0.0 . 94 . . . none . . PASS Atlas-SNP CDKL5 6792 hgsc.bcm.edu hg19 X 18598004 18598004 + Missense_Mutation SNP G G T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . CDKL5 NM_003159 exon6 c.G319T p.V107F AATGGAGTTCCAC . 310.0 151.0 222.0 0.0 . 124 . . . none . . PASS Atlas-SNP YIPF6 286451 hgsc.bcm.edu hg19 X 67731818 67731818 + Missense_Mutation SNP T T A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . YIPF6 NM_173834 exon2 c.T185A p.I62N ATACCATCGTAAG . 49.0 29.0 47.0 0.0 . 27 . . . none . . PASS Atlas-SNP TEX11 56159 hgsc.bcm.edu hg19 X 69844743 69844743 + Missense_Mutation SNP A A C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . TEX11 NM_001003811 exon20 c.T1685G p.L562W TATTCCAAAGCTT . 162.0 67.0 92.0 0.0 . 132 . . . none . . PASS Atlas-SNP MED12 9968 hgsc.bcm.edu hg19 X 70350038 70350038 + Missense_Mutation SNP C C T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . MED12 NM_005120 exon28 c.C4021T p.R1341W CCCCAGCGGCAGC . 521.0 255.0 317.0 0.0 . 984 . . . none . . PASS Atlas-SNP VGLL1 51442 hgsc.bcm.edu hg19 X 135630875 135630875 + Missense_Mutation SNP G G C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . VGLL1 NM_016267 exon3 c.G342C p.Q114H GAATCAGTTCTCA . 112.0 53.0 78.0 0.0 . 41 . . . none . . PASS Atlas-SNP BCAP31 10134 hgsc.bcm.edu hg19 X 152988658 152988658 + Silent SNP C C T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . BCAP31 NM_001139457 exon2 c.G243A p.A81A GACCTCCGCATAG . 473.0 206.0 314.0 1.0 . 33 . . . none . . PASS Atlas-SNP HCFC1 3054 hgsc.bcm.edu hg19 X 153216353 153216353 + Missense_Mutation SNP A A G novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . HCFC1 NM_005334 exon23 c.T5614C p.C1872R GGCCACAGGCATT . 360.0 177.0 275.0 0.0 . 284 . . . none . . PASS Atlas-SNP CYTB 0 hgsc.bcm.edu hg19 MT 14760 14760 + Missense_Mutation SNP G G A novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . . ENST00000361789 exon1 c.G14A p.R5H CAATACGCAAAAC . 99.0 7.0 129.0 0.0 . . . . . none . . PASS Atlas-SNP LRRC58 116064 hgsc.bcm.edu hg19 3 120054774 120054774 + Frame_Shift_Del DEL T T - novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . LRRC58 NM_001099678 exon2 c.528delT p.N176fs . . 58.0 20.0 55.0 0.0 . 18 . 0.344828 0 none . . PASS Atlas-Indel,Pindel CAMK2N1 55450 hgsc.bcm.edu hg19 1 20811794 20811796 + In_Frame_Del DEL AGG AGG - novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 AGG AGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . CAMK2N1 NM_018584 exon1 c.78_80del p.26_27del . . 78.0 48.0 59.0 0.0 . 7 . 0.615385 0 none . . PASS Atlas-Indel,Pindel HSPA14 51182 hgsc.bcm.edu hg19 10 14909284 14909284 + Frame_Shift_Del DEL T T - novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . HSPA14 NM_016299 exon11 c.1195delA p.I399fs . . 127.0 66.0 74.0 0.0 . 42 . 0.519685 0 none . . PASS Atlas-Indel,Pindel RSG1 79363 hgsc.bcm.edu hg19 1 16563166 16563167 + Frame_Shift_Ins INS - - T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . RSG1 NM_030907 exon1 c.72_73insA p.Y24_L25delinsX . . 205.0 85.0 133.0 0.0 . 18 . 0.414634 0 none . . PASS Atlas-Indel,Pindel URM1 81605 hgsc.bcm.edu hg19 9 131151666 131151667 + Frame_Shift_Del DEL GG GG - novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 GG GG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . URM1 NM_001135947 exon4 c.314_315del p.105_105del . . 169.0 41.0 62.0 0.0 . 19 . 0.242604 0 none . . PASS Atlas-Indel,Pindel PRAMEF1 65121 hgsc.bcm.edu hg19 1 12855755 12855756 + Frame_Shift_Ins INS - - AA novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . PRAMEF1 NM_023013 exon4 c.1035_1036insAA p.E345fs . . 261.0 99.0 179.0 0.0 . 78 . 0.37931 0 none . . PASS Atlas-Indel,Pindel PPM1M 132160 hgsc.bcm.edu hg19 3 52282984 52282984 + Frame_Shift_Del DEL G G - novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . PPM1M NM_144641 exon8 c.990delA p.L330fs . . 94.0 53.0 58.0 0.0 . 9 . 0.56383 0 none . . PASS Atlas-Indel,Pindel PIGM 93183 hgsc.bcm.edu hg19 1 160001302 160001303 + Frame_Shift_Ins INS - - T novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . PIGM NM_145167 exon1 c.228_229insA p.Y76_T77delinsX . . 380.0 171.0 233.0 0.0 . 27 . 0.45 0 none . . PASS Atlas-Indel,Pindel EDDM3A 10876 hgsc.bcm.edu hg19 14 21215972 21215973 + Frame_Shift_Ins INS - - CA novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . EDDM3A NM_006683 exon2 c.233_234insCA p.R78fs . . 92.0 29.0 67.0 0.0 . 15 . 0.315217 0 none . . PASS Atlas-Indel,Pindel LRRK1 79705 hgsc.bcm.edu hg19 15 101589985 101589985 + Frame_Shift_Del DEL C C - novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . LRRK1 NM_024652 exon23 c.3435delT p.F1145fs . . 62.0 28.0 41.0 0.0 . 310 . 0.451613 0 none . . PASS Atlas-Indel,Pindel EDDM3A 10876 hgsc.bcm.edu hg19 14 21215971 21215972 + Frame_Shift_Ins INS - - CT novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . EDDM3A NM_006683 exon2 c.232_233insCT p.R78fs . . 93.0 29.0 68.0 0.0 . 15 . 0.311828 0 none . . PASS Atlas-INDEL CLUH 23277 hgsc.bcm.edu hg19 17 2599551 2599552 + Frame_Shift_Del DEL CC CC - novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 CC CC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . . NM_015229 exon13 c.2176_2177del p.726_726del . . 169.0 91.0 122.0 0.0 . . . 0.538462 0 none . . PASS Atlas-Indel,Pindel MUC5B 727897 hgsc.bcm.edu hg19 11 1256589 1256589 + Frame_Shift_Del DEL C C - rs35904319 TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . MUC5B NM_002458 exon23 c.2825delT p.I942fs . . 124.0 57.0 105.0 0.0 . 473 . 0.459677 0 weak . . PASS Atlas-Indel,Pindel ANGPTL3 27329 hgsc.bcm.edu hg19 1 63070461 63070462 + Frame_Shift_Ins INS - - C novel TCGA-Y8-A894-01A-11D-A35Z-10 TCGA-Y8-A894-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b9ebe3e-3992-4806-934e-c135aa155ff9 a1ac890b-98dd-4011-aee1-b4409f2a659a . ANGPTL3 NM_014495 exon7 c.1356_1357insC p.N452fs . . 363.0 90.0 234.0 0.0 . 42 . 0.248 . none . . PASS Pindel