Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
MUTYH	4595	hgsc.bcm.edu	hg19	1	45797352	45797352	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	MUTYH	NM_001128425	exon12	c.G1167A	p.L389L	CTGCACCAGCAGA	.	31.0	11.0	49.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
SLC50A1	55974	hgsc.bcm.edu	hg19	1	155110120	155110120	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	SLC50A1	NM_018845	exon4	c.T366C	p.P122P	CAACCCTGAGGCC	.	44.0	24.0	92.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
ATP1A4	480	hgsc.bcm.edu	hg19	1	160146320	160146320	+	Silent	SNP	A	A	C	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	ATP1A4	NM_144699	exon17	c.A2518C	p.R840R	ATGAAGAGGCTTC	.	75.0	27.0	135.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	hg19	2	11755338	11755338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	GREB1	NM_014668	exon20	c.G3244A	p.A1082T	AAGGGGGCTAGGA	.	74.0	29.0	126.0	0.0	.	308	.	.	.	none	.	.	PASS	Atlas-SNP
NAT8	9027	hgsc.bcm.edu	hg19	2	73868455	73868455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	NAT8	NM_003960	exon2	c.T301C	p.Y101H	TCAGGTAGGATTT	.	107.0	45.0	134.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
SCTR	6344	hgsc.bcm.edu	hg19	2	120221714	120221714	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	SCTR	NM_002980	exon6	c.C621T	p.Y207Y	ATCGCAGTAGGTG	.	97.0	39.0	122.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
GPR155	151556	hgsc.bcm.edu	hg19	2	175304729	175304729	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	GPR155	NM_001033045	exon16	c.G2209C	p.E737Q	TGTTTTCTGCTGT	.	59.0	31.0	81.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
GIGYF2	26058	hgsc.bcm.edu	hg19	2	233612395	233612395	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	GIGYF2	NM_001103146	exon4	c.T112C	p.L38L	TATAAATTAGCAG	.	68.0	28.0	96.0	0.0	.	288	.	.	.	none	.	.	PASS	Atlas-SNP
OR6B2	389090	hgsc.bcm.edu	hg19	2	240969002	240969002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	OR6B2	NM_001005853	exon1	c.C845T	p.T282M	ATTGGCGTGACAA	.	146.0	7.0	229.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
LRPAP1	4043	hgsc.bcm.edu	hg19	4	3533995	3533995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	LRPAP1	NM_002337	exon1	c.G145A	p.E49K	CGGACTCGCGTTT	.	99.0	41.0	158.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC66	339977	hgsc.bcm.edu	hg19	4	52861561	52861561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	LRRC66	NM_001024611	exon4	c.G1627A	p.A543T	CCTGGGCCACAGT	.	77.0	24.0	114.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC66	339977	hgsc.bcm.edu	hg19	4	52861562	52861562	+	Silent	SNP	C	C	G	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	LRRC66	NM_001024611	exon4	c.G1626C	p.V542V	CTGGGCCACAGTT	.	76.0	23.0	117.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
GRIA2	2891	hgsc.bcm.edu	hg19	4	158257702	158257702	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	GRIA2	NM_000826	exon11	c.C1647A	p.C549X	GATGTGCATTGTT	.	128.0	39.0	247.0	0.0	.	358	.	.	.	none	.	.	PASS	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	hg19	4	183696133	183696133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	.	NM_001080477	exon23	c.G5131A	p.G1711S	GCCAGTGGCCTGG	.	141.0	57.0	189.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5465025	5465025	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	KIAA0947	NM_015325	exon13	c.A5578T	p.R1860W	GAAACCAGGGGAG	.	229.0	108.0	303.0	0.0	.	301	.	.	.	none	.	.	PASS	Atlas-SNP
FAM173B	134145	hgsc.bcm.edu	hg19	5	10227716	10227716	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	FAM173B	NM_199133	exon5	c.A539G	p.D180G	CGTGCATCATCCT	.	83.0	4.0	82.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF622	90441	hgsc.bcm.edu	hg19	5	16463842	16463842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	ZNF622,NS,carcinoma,0,1	ZNF622	NM_033414	exon2	c.A635G	p.D212G	TCAATATCTTCCC	.	78.0	30.0	91.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
RXFP3	51289	hgsc.bcm.edu	hg19	5	33937725	33937725	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	RXFP3	NM_016568	exon1	c.A880T	p.I294F	CGCTTCATCGCCG	.	53.0	31.0	75.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
RASA1	5921	hgsc.bcm.edu	hg19	5	86659213	86659213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	RASA1	NM_002890	exon11	c.A1502G	p.D501G	GTAGTGATGCCCA	.	78.0	31.0	102.0	0.0	.	213	.	.	.	none	.	.	PASS	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56464935	56464935	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	DST	NM_015548	exon26	c.G3757C	p.G1253R	GGTGACCAATTAG	.	74.0	27.0	124.0	0.0	.	1427	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB24	9841	hgsc.bcm.edu	hg19	6	109796655	109796655	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	ZBTB24	NM_014797	exon5	c.A1235C	p.H412P	TTGCGATGGCAGT	.	65.0	26.0	115.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
IGF2BP3	10643	hgsc.bcm.edu	hg19	7	23357270	23357270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	IGF2BP3	NM_006547	exon12	c.G1383T	p.E461D	CTGAGCCTCTGGT	.	108.0	45.0	78.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
AQP1	358	hgsc.bcm.edu	hg19	7	30963176	30963176	+	Missense_Mutation	SNP	G	G	A	rs149637560		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	AQP1	NM_198098	exon4	c.G742A	p.G248S	ACCAGCGGCCAGG	.	252.0	116.0	228.0	0.0	.	38	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
C8orf74	203076	hgsc.bcm.edu	hg19	8	10555296	10555296	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	C8orf74	NM_001040032	exon3	c.G429A	p.E143E	CCTGGAGGTGTGC	.	69.0	25.0	102.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
SLC7A2	6542	hgsc.bcm.edu	hg19	8	17409383	17409383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	SLC7A2	NM_001164771	exon6	c.C1063T	p.P355S	ATGATGCCGTACT	.	120.0	50.0	186.0	0.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
PEX2	5828	hgsc.bcm.edu	hg19	8	77896129	77896129	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	PEX2	NM_000318	exon4	c.C286T	p.Q96X	GTGGCTGATATCT	.	103.0	35.0	154.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
PHF2	5253	hgsc.bcm.edu	hg19	9	96435951	96435951	+	Silent	SNP	G	G	C	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	PHF2	NM_005392	exon18	c.G2433C	p.L811L	CTGCCTGCAGACC	.	116.0	47.0	150.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	16941122	16941122	+	Missense_Mutation	SNP	T	T	C	rs141773881		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	CUBN	NM_001081	exon54	c.A8471G	p.N2824S	GGAAAATTCTGAG	.	96.0	78.0	130.0	0.0	.	515	.	.	.	weak	T|1.000;C|0.000	0.000	PASS	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	hg19	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	C10orf140_ENST00000449193,rectum,carcinoma,0,4	.	NM_207371	exon4	c.G1266A	p.E422E	TTCCTCCTCCTCC	.	36.0	7.0	52.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP14	338323	hgsc.bcm.edu	hg19	11	7064285	7064285	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	NLRP14	NM_176822	exon4	c.T1028A	p.F343Y	AGTTTTTTGAAGA	.	83.0	30.0	128.0	0.0	.	187	.	.	.	none	.	.	PASS	Atlas-SNP
FAR1	84188	hgsc.bcm.edu	hg19	11	13729613	13729613	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	FAR1	NM_032228	exon4	c.A532C	p.I178L	AAGCTGATTGATT	.	47.0	23.0	80.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM77	390231	hgsc.bcm.edu	hg19	11	89443479	89443479	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	.	NM_001146162	exon1	c.A13T	p.I5F	TCTGCTATCACGC	.	61.0	21.0	97.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TSPAN11	441631	hgsc.bcm.edu	hg19	12	31135568	31135568	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	TSPAN11	NM_001080509	exon6	c.G558C	p.K186N	CTGCAAGACAGTG	.	134.0	59.0	208.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	hg19	12	72056805	72056805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	ZFC3H1	NM_144982	exon1	c.C586A	p.P196T	TCCGAGGTGGAGA	.	32.0	13.0	35.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
VPS36	51028	hgsc.bcm.edu	hg19	13	52992189	52992189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	VPS36	NM_016075	exon11	c.G843T	p.L281F	TGAGAGCAACTAA	.	55.0	12.0	90.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77657271	77657271	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	MYCBP2	NM_015057	exon63	c.A10932G	p.E3644E	AGCAGCTTCCCCG	.	60.0	20.0	102.0	0.0	.	1029	.	.	.	none	.	.	PASS	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77657272	77657272	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	MYCBP2	NM_015057	exon63	c.A10931C	p.E3644A	GCAGCTTCCCCGG	.	59.0	18.0	99.0	0.0	.	1029	.	.	.	none	.	.	PASS	Atlas-SNP
KCNH5	27133	hgsc.bcm.edu	hg19	14	63468086	63468086	+	Silent	SNP	C	C	T	rs143574473		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	KCNH5	NM_172375	exon4	c.G396A	p.T132T	GAACAACGTAATA	.	102.0	32.0	130.0	0.0	.	320	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
SLC28A1	9154	hgsc.bcm.edu	hg19	15	85488365	85488365	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	SLC28A1	NM_004213	exon19	c.A1884G	p.P628P	CAATCCAGAGTTC	.	81.0	35.0	124.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
SHMT1	6470	hgsc.bcm.edu	hg19	17	18232672	18232672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	SHMT1	NM_004169	exon11	c.T1202C	p.L401P	AGCCGCAGTCCAC	.	57.0	18.0	57.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
TBCD	6904	hgsc.bcm.edu	hg19	17	80714073	80714073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	TBCD	NM_005993	exon2	c.C217A	p.L73M	CCTCATCTGTTGG	.	78.0	42.0	100.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
DSG1	1828	hgsc.bcm.edu	hg19	18	28935300	28935300	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	DSG1	NM_001942	exon15	c.T3141A	p.Y1047X	GCAATATAGCAAG	.	63.0	26.0	89.0	0.0	.	176	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF429	353088	hgsc.bcm.edu	hg19	19	21712584	21712584	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	ZNF429	NM_001001415	exon2	c.T128A	p.L43Q	TCTTCCTGGGTGA	.	108.0	43.0	194.0	0.0	.	338	.	.	.	none	.	.	PASS	Atlas-SNP
SLC1A5	6510	hgsc.bcm.edu	hg19	19	47278876	47278876	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	SLC1A5	NM_005628	exon8	c.C1517G	p.P506R	TCCAGGGGCAGCT	.	98.0	48.0	141.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
PIH1D1	55011	hgsc.bcm.edu	hg19	19	49950663	49950663	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	PIH1D1	NM_017916	exon6	c.G543A	p.S181S	CTGCTCCGAGCGG	.	29.0	9.0	51.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
BMP7	655	hgsc.bcm.edu	hg19	20	55748287	55748287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	BMP7	NM_001719	exon6	c.A1115G	p.N372S	GTGGCGTTCATGT	.	84.0	25.0	74.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
HELZ2	85441	hgsc.bcm.edu	hg19	20	62195231	62195231	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	.	NM_001037335	exon9	c.C4944T	p.G1648G	GCAGCGGCCGAAC	.	56.0	16.0	51.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
HSPD1	3329	hgsc.bcm.edu	hg19	2	198362107	198362108	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	HSPD1	NM_002156	exon3	c.184_185del	p.62_62del	.	.	143.0	50.0	271.0	0.0	.	68	.	0.34965	0	none	.	.	PASS	Atlas-Indel,Pindel
SLC25A13	10165	hgsc.bcm.edu	hg19	7	95750615	95750615	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	SLC25A13	NM_001160210	exon18	c.1920delC	p.G640fs	.	.	194.0	88.0	174.0	0.0	.	131	.	0.453608	0	none	.	.	PASS	Atlas-Indel,Pindel
LRRC42	115353	hgsc.bcm.edu	hg19	1	54433526	54433526	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	LRRC42	NM_052940	exon8	c.1200delG	p.E400fs	.	.	116.0	49.0	171.0	0.0	.	29	.	0.422414	0	none	.	.	PASS	Atlas-INDEL
LRRC42	115353	hgsc.bcm.edu	hg19	1	54433526	54433527	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-UZ-A9PZ-01A-11D-A42J-10	TCGA-UZ-A9PZ-10A-01D-A42M-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d803a908-b844-4475-8169-a7139df2f89e	027f6901-bb89-4fb7-8e82-7dd1ba7fcaf3	.	LRRC42	NM_052940	exon8	c.1200_1201del	p.400_401del	.	.	118.0	36.0	176.0	0.0	.	29	.	0.305	.	none	.	.	PASS	Pindel