Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm SLC35E2 9906 hgsc.bcm.edu hg19 1 1670432 1670432 + Missense_Mutation SNP T T A rs17339526 alternate_allele TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 SLC35E2,NS,carcinoma,0,1 SLC35E2 NM_182838 exon3 c.A387T p.L129F CTGATATAAACAG . 790.0 101.0 1349.0 0.0 . 13 . . . alt T|1.000;|0.000 . PASS Atlas-SNP ICMT 23463 hgsc.bcm.edu hg19 1 6285207 6285207 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . ICMT NM_012405 exon5 c.A788T p.Y263F TCCAGGTACTCCT . 41.0 17.0 61.0 0.0 . 13 . . . none . . PASS Atlas-SNP KLHDC7A 127707 hgsc.bcm.edu hg19 1 18808387 18808387 + Silent SNP C C A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . KLHDC7A NM_152375 exon1 c.C912A p.G304G CCAGGGCAGGCTG . 61.0 28.0 121.0 0.0 . 60 . . . none . . PASS Atlas-SNP LEPRE1 64175 hgsc.bcm.edu hg19 1 43224941 43224941 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . LEPRE1 NM_001146289 exon3 c.G739A p.E247K GCCCTTCGCAGAG . 121.0 7.0 199.0 0.0 . 130 . . . none . . PASS Atlas-SNP BCAR3 8412 hgsc.bcm.edu hg19 1 94048486 94048486 + Missense_Mutation SNP G G C novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . BCAR3 NM_001261409 exon7 c.C1058G p.S353W ACACCCGAGGACT . 11.0 5.0 22.0 0.0 . 62 . . . none . . PASS Atlas-SNP ZBTB7B 51043 hgsc.bcm.edu hg19 1 154987953 154987953 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . ZBTB7B NM_001252406 exon4 c.T919A p.Y307N GAACCCTATGAGG . 102.0 47.0 154.0 0.0 . 69 . . . none . . PASS Atlas-SNP RC3H1 149041 hgsc.bcm.edu hg19 1 173921219 173921219 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . RC3H1 NM_172071 exon13 c.T2428C p.Y810H GAGAGTATTGGCT . 45.0 19.0 70.0 0.0 . 110 . . . none . . PASS Atlas-SNP LRRN2 10446 hgsc.bcm.edu hg19 1 204587083 204587083 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . LRRN2 NM_006338 exon3 c.C2038T p.R680W CAACCCGGACAGA . 116.0 44.0 203.0 0.0 . 81 . . . none . . PASS Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228509045 228509045 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . OBSCN NM_001271223 exon66 c.G17374A p.V5792I CCACAGGTTGGGG . 36.0 10.0 83.0 0.0 . 2142 . . . none . . PASS Atlas-SNP SPTBN1 6711 hgsc.bcm.edu hg19 2 54873419 54873419 + Missense_Mutation SNP T T G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . SPTBN1 NM_003128 exon23 c.T4673G p.L1558R GCAGCCTCAGCGC . 105.0 6.0 188.0 0.0 . 378 . . . none . . PASS Atlas-SNP POLR1A 25885 hgsc.bcm.edu hg19 2 86297161 86297161 + Nonsense_Mutation SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . POLR1A NM_015425 exon13 c.C1846T p.Q616X ACTGCTGATCAGT . 21.0 9.0 27.0 0.0 . 137 . . . none . . PASS Atlas-SNP RNF103-CHMP3 100526767 hgsc.bcm.edu hg19 2 86769412 86769412 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . . NM_001198954 exon4 c.A156G p.I52M CTTTCTTATCTTC . 142.0 64.0 227.0 0.0 . . . . . none . . PASS Atlas-SNP MERTK 10461 hgsc.bcm.edu hg19 2 112686995 112686995 + Silent SNP T T G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . MERTK NM_006343 exon2 c.T360G p.P120P TGTACCTAATATA . 116.0 41.0 188.0 0.0 . 112 . . . none . . PASS Atlas-SNP AMER3 205147 hgsc.bcm.edu hg19 2 131519874 131519874 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 FAM123C,NS,carcinoma,0,1 . NM_152698 exon2 c.G229A p.G77R AAAGGGGGACCCG . 80.0 4.0 140.0 0.0 . . . . . none . . PASS Atlas-SNP SCN9A 6335 hgsc.bcm.edu hg19 2 167094694 167094694 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . SCN9A NM_002977 exon20 c.C3678A p.F1226L CAGAATGAAGATG . 136.0 51.0 301.0 0.0 . 296 . . . none . . PASS Atlas-SNP ATP5G3 518 hgsc.bcm.edu hg19 2 176043935 176043935 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . ATP5G3 NM_001190329 exon4 c.T164C p.L55P TGGATTAGCTGAG . 52.0 21.0 69.0 0.0 . 11 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179644087 179644087 + Nonsense_Mutation SNP T T A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . TTN NM_001267550 exon23 c.A3832T p.K1278X CCATCTTTTCTTC . 105.0 47.0 135.0 0.0 . 18412 . . . none . . PASS Atlas-SNP ZNF589 51385 hgsc.bcm.edu hg19 3 48309513 48309513 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . ZNF589 NM_016089 exon4 c.A332G p.H111R GTTTCCATGCAGG . 31.0 26.0 64.0 0.0 . 20 . . . none . . PASS Atlas-SNP RBM27 54439 hgsc.bcm.edu hg19 5 145583374 145583374 + Silent SNP T T C novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . RBM27 NM_018989 exon1 c.T46C p.L16L GCCAAGTTACTGG . 106.0 35.0 202.0 0.0 . 119 . . . none . . PASS Atlas-SNP PPP1R3G 648791 hgsc.bcm.edu hg19 6 5086761 5086761 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . PPP1R3G NM_001145115 exon1 c.A1042G p.T348A AACTACACGCTGC . 27.0 11.0 56.0 0.0 . 11 . . . none . . PASS Atlas-SNP OR10C1 442194 hgsc.bcm.edu hg19 6 29408295 29408295 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . OR10C1 NM_013941 exon1 c.G503A p.C168Y CCTTCTGCGGCCC . 34.0 13.0 36.0 0.0 . 58 . . . none . . PASS Atlas-SNP MICA 100507436 hgsc.bcm.edu hg19 6 31379810 31379810 + Missense_Mutation SNP A A T novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . MICA NM_001177519 exon4 c.A700T p.N234Y CCCCGGAATATCA . 63.0 25.0 88.0 0.0 . 21 . . . none . . PASS Atlas-SNP BAI3 577 hgsc.bcm.edu hg19 6 69772840 69772840 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . BAI3 NM_001704 exon16 c.T2348A p.I783N CTGTCATTAATTC . 63.0 30.0 79.0 0.0 . 451 . . . none . . PASS Atlas-SNP HGC6.3 0 hgsc.bcm.edu hg19 6 168377132 168377132 + Silent SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . . NM_001129895 exon1 c.C201T p.H67H TGCAGTGTGTTGG . 197.0 8.0 263.0 0.0 . . . . . none . . PASS Atlas-SNP ITGB8 3696 hgsc.bcm.edu hg19 7 20449400 20449400 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . ITGB8 NM_002214 exon13 c.A2186G p.K729R CAAAAAAGGTCAG . 64.0 25.0 113.0 0.0 . 159 . . . none . . PASS Atlas-SNP URGCP 55665 hgsc.bcm.edu hg19 7 43917041 43917041 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . URGCP NM_001077663 exon6 c.G2021T p.W674L GTGACCCAGCGGA . 24.0 12.0 42.0 0.0 . 170 . . . none . . PASS Atlas-SNP MDH2 4191 hgsc.bcm.edu hg19 7 75693752 75693752 + Silent SNP A A G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . MDH2 NM_005918 exon7 c.A729G p.G243G AGCCGGAGCAGGT . 79.0 37.0 121.0 0.0 . 35 . . . none . . PASS Atlas-SNP MLL5 55904 hgsc.bcm.edu hg19 7 104742604 104742604 + Missense_Mutation SNP T T G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . MLL5 NM_018682 exon16 c.T2159G p.L720R CAGCACTTAATAA . 81.0 23.0 141.0 0.0 . 173 . . . none . . PASS Atlas-SNP WASL 8976 hgsc.bcm.edu hg19 7 123332492 123332492 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . WASL NM_003941 exon9 c.T1256C p.L419P TTTTTTAGCTGAG . 44.0 14.0 73.0 0.0 . 70 . . . none . . PASS Atlas-SNP BRAF 673 hgsc.bcm.edu hg19 7 140453136 140453136 + Missense_Mutation SNP A A T rs121913227 bycluster TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 BRAF,NS,adenoma,0,1 BRAF NM_004333 exon15 c.T1799A p.V600E GATTTCACTGTAG . 50.0 19.0 55.0 0.0 . 36346 . . . weak . . PASS Atlas-SNP NKX2-6 137814 hgsc.bcm.edu hg19 8 23560587 23560587 + Silent SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . NKX2-6 NM_001136271 exon2 c.C283T p.L95L CGTTCAGGCCGGG . 36.0 33.0 69.0 0.0 . 6 . . . none . . PASS Atlas-SNP INTS9 55756 hgsc.bcm.edu hg19 8 28671112 28671112 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . INTS9 NM_018250 exon7 c.T506C p.L169P TCCTTGAGAGGAG . 71.0 61.0 145.0 0.0 . 43 . . . none . . PASS Atlas-SNP INTS9 55756 hgsc.bcm.edu hg19 8 28671113 28671113 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . INTS9 NM_018250 exon7 c.C505T p.L169F CCTTGAGAGGAGA . 72.0 62.0 142.0 0.0 . 43 . . . none . . PASS Atlas-SNP KCNB2 9312 hgsc.bcm.edu hg19 8 73480085 73480085 + Missense_Mutation SNP T T G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . KCNB2 NM_004770 exon2 c.T116G p.I39S TTAAGATCAATGT . 55.0 42.0 106.0 0.0 . 228 . . . none . . PASS Atlas-SNP ZCCHC7 84186 hgsc.bcm.edu hg19 9 37349376 37349376 + Missense_Mutation SNP A A C novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . ZCCHC7 NM_032226 exon7 c.A1010C p.K337T CCAAAAAGCCGAA . 52.0 21.0 110.0 0.0 . 56 . . . none . . PASS Atlas-SNP C9orf3 84909 hgsc.bcm.edu hg19 9 97767897 97767897 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . C9orf3 NM_001193329 exon12 c.A2114G p.K705R TTGAAAAGGTAGG . 115.0 40.0 200.0 0.0 . 100 . . . none . . PASS Atlas-SNP OAT 4942 hgsc.bcm.edu hg19 10 126097337 126097337 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . OAT NM_000274 exon3 c.T397C p.Y133H TGTGGTAGTTGAA . 175.0 47.0 293.0 0.0 . 25 . . . none . . PASS Atlas-SNP CALCA 796 hgsc.bcm.edu hg19 11 14992664 14992664 + Silent SNP T T A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . CALCA NM_001033953 exon2 c.A75T p.A25A TGGTGCTGCATGG . 32.0 10.0 53.0 0.0 . 30 . . . none . . PASS Atlas-SNP LTBP3 4054 hgsc.bcm.edu hg19 11 65320922 65320922 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . LTBP3 NM_001130144 exon4 c.A944T p.K315M TGGCACTTGCTCT . 46.0 17.0 70.0 0.0 . 55 . . . none . . PASS Atlas-SNP ABCG4 64137 hgsc.bcm.edu hg19 11 119020846 119020846 + Silent SNP A A T novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . ABCG4 NM_022169 exon2 c.A171T p.S57S GCGCTCAGCCGTG . 58.0 31.0 92.0 0.0 . 77 . . . none . . PASS Atlas-SNP CMAS 55907 hgsc.bcm.edu hg19 12 22208120 22208120 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . CMAS NM_018686 exon2 c.G298A p.V100M GAGAATGTGGCCA . 157.0 42.0 181.0 0.0 . 45 . . . none . . PASS Atlas-SNP TPCN1 53373 hgsc.bcm.edu hg19 12 113733831 113733831 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 TPCN1,colon,carcinoma,0,1 TPCN1 NM_001143819 exon29 c.G2617A p.A873T GCCCCCGCCGCCC . 147.0 54.0 181.0 0.0 . 109 . . . none . . PASS Atlas-SNP KNTC1 9735 hgsc.bcm.edu hg19 12 123065184 123065184 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . KNTC1 NM_014708 exon33 c.G2949A p.M983I AGAAATGTTGAAA . 194.0 104.0 254.0 0.0 . 182 . . . none . . PASS Atlas-SNP FBRSL1 57666 hgsc.bcm.edu hg19 12 133158846 133158846 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . FBRSL1 NM_001142641 exon16 c.A2324G p.Q775R AGGAGCAGGAACG . 115.0 63.0 130.0 0.0 . 47 . . . none . . PASS Atlas-SNP COL4A1 1282 hgsc.bcm.edu hg19 13 110844571 110844571 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . COL4A1 NM_001845 exon24 c.C1526T p.A509V ACTCCTGCAACAC . 33.0 9.0 64.0 0.0 . 372 . . . none . . PASS Atlas-SNP COL4A1 1282 hgsc.bcm.edu hg19 13 110844572 110844572 + Missense_Mutation SNP C C G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . COL4A1 NM_001845 exon24 c.G1525C p.A509P CTCCTGCAACACC . 34.0 9.0 65.0 0.0 . 372 . . . none . . PASS Atlas-SNP DDHD1 80821 hgsc.bcm.edu hg19 14 53522531 53522531 + Missense_Mutation SNP T T G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . DDHD1 NM_001160147 exon11 c.A2113C p.M705L GCTTCATATGTTC . 52.0 23.0 79.0 0.0 . 202 . . . none . . PASS Atlas-SNP ULK3 25989 hgsc.bcm.edu hg19 15 75135403 75135403 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . ULK3 NM_001099436 exon1 c.T44C p.I15T GTGAGGATGAAGC . 98.0 29.0 153.0 0.0 . 30 . . . none . . PASS Atlas-SNP SLC28A1 9154 hgsc.bcm.edu hg19 15 85476403 85476403 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . SLC28A1 NM_004213 exon13 c.T1111A p.S371T GCAGCCTCTGTGA . 34.0 14.0 55.0 0.0 . 118 . . . none . . PASS Atlas-SNP PRR14 78994 hgsc.bcm.edu hg19 16 30666905 30666905 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . PRR14 NM_024031 exon10 c.G1397A p.R466Q TGCCTCGACCAAT . 81.0 47.0 70.0 0.0 . 45 . . . none . . PASS Atlas-SNP VMO1 284013 hgsc.bcm.edu hg19 17 4688689 4688689 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . VMO1 NM_182566 exon3 c.A577G p.N193D CGTCGTTCAGCGC . 29.0 5.0 41.0 0.0 . 19 . . . none . . PASS Atlas-SNP OMG 4974 hgsc.bcm.edu hg19 17 29622689 29622689 + Missense_Mutation SNP T T G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . OMG NM_002544 exon2 c.A661C p.T221P AAAGGGTTATCTC . 79.0 23.0 100.0 0.0 . 30 . . . none . . PASS Atlas-SNP BPTF 2186 hgsc.bcm.edu hg19 17 65944312 65944312 + Nonsense_Mutation SNP C C T novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . BPTF NM_182641 exon23 c.C7816T p.Q2606X AGCAAGCAGAATG . 96.0 21.0 113.0 0.0 . 415 . . . none . . PASS Atlas-SNP NPC1 4864 hgsc.bcm.edu hg19 18 21112245 21112245 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . NPC1 NM_000271 exon25 c.C3758A p.P1253Q ACTGATGGCCCTA . 67.0 22.0 66.0 0.0 . 114 . . . none . . PASS Atlas-SNP KATNAL2 83473 hgsc.bcm.edu hg19 18 44595931 44595931 + Missense_Mutation SNP T T G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . KATNAL2 NM_031303 exon10 c.T752G p.I251S CCACCATTGTCAG . 62.0 35.0 109.0 0.0 . 64 . . . none . . PASS Atlas-SNP ALPK2 115701 hgsc.bcm.edu hg19 18 56149190 56149190 + Silent SNP T T C novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . ALPK2 NM_052947 exon13 c.A6378G p.K2126K CAGCATTTTGCAA . 56.0 23.0 113.0 0.0 . 487 . . . none . . PASS Atlas-SNP SAFB 6294 hgsc.bcm.edu hg19 19 5664085 5664085 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . SAFB NM_002967 exon16 c.T2206C p.Y736H GAGCGCTACCATT . 38.0 19.0 47.0 0.0 . 74 . . . none . . PASS Atlas-SNP MLLT1 4298 hgsc.bcm.edu hg19 19 6270658 6270658 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . MLLT1 NM_005934 exon2 c.G125A p.C42Y ATGTCACATTGCT . 36.0 19.0 52.0 0.0 . 47 . . . none . . PASS Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9064158 9064158 + Missense_Mutation SNP G G C novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . MUC16 NM_024690 exon3 c.C23288G p.T7763R GCTTCTGTATGTG . 96.0 39.0 133.0 0.0 . 4315 . . . none . . PASS Atlas-SNP PRKCSH 5589 hgsc.bcm.edu hg19 19 11558367 11558367 + Silent SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . PRKCSH NM_001001329 exon11 c.G963A p.E321E GGAGGAGGAGGAA . 74.0 9.0 108.0 0.0 . 55 . . . none . . PASS Atlas-SNP AKAP8 10270 hgsc.bcm.edu hg19 19 15483755 15483755 + Silent SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . AKAP8 NM_005858 exon5 c.C768T p.Y256Y CACGCCGTAGTCG . 67.0 25.0 110.0 0.0 . 68 . . . none . . PASS Atlas-SNP ATP1A3 478 hgsc.bcm.edu hg19 19 42482815 42482815 + Nonsense_Mutation SNP T T A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . ATP1A3 NM_001256214 exon12 c.A1612T p.K538X CCTCCTTCATTTC . 36.0 18.0 48.0 0.0 . 117 . . . none . . PASS Atlas-SNP APOC4 346 hgsc.bcm.edu hg19 19 45448498 45448498 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . APOC4 NM_001646 exon3 c.G320A p.S107N AAGACAGCCTCTT . 39.0 15.0 88.0 0.0 . 6 . . . none . . PASS Atlas-SNP MYH14 79784 hgsc.bcm.edu hg19 19 50714027 50714027 + Silent SNP C C T novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . MYH14 NM_001077186 exon2 c.C405T p.Y135Y CATCTACGTGAGT . 63.0 29.0 109.0 0.0 . 261 . . . none . . PASS Atlas-SNP MYH14 79784 hgsc.bcm.edu hg19 19 50714028 50714028 + Splice_Site SNP G G C novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . MYH14 NM_001077186 exon2 c.405+1G>C . ATCTACGTGAGTG . 65.0 30.0 110.0 0.0 . 261 . . . none . . PASS Atlas-SNP PHF20 51230 hgsc.bcm.edu hg19 20 34459634 34459634 + Missense_Mutation SNP G G C novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . PHF20 NM_016436 exon9 c.G1165C p.G389R TCCTTTGGGGATG . 88.0 46.0 104.0 0.0 . 94 . . . none . . PASS Atlas-SNP HELZ2 85441 hgsc.bcm.edu hg19 20 62193551 62193551 + Missense_Mutation SNP G G C novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . . NM_001037335 exon11 c.C6403G p.P2135A TGCTGGGGATCAC . 73.0 19.0 69.0 0.0 . . . . . none . . PASS Atlas-SNP IL10RB 3588 hgsc.bcm.edu hg19 21 34648956 34648956 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . IL10RB NM_000628 exon3 c.T229A p.S77T GATTTCTCAAGTC . 52.0 20.0 91.0 0.0 . 37 . . . none . . PASS Atlas-SNP COL18A1 80781 hgsc.bcm.edu hg19 21 46896343 46896343 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . COL18A1 NM_030582 exon5 c.G1417A p.D473N ACGGAAGATTCCA . 64.0 32.0 90.0 0.0 . 129 . . . none . . PASS Atlas-SNP TRMT2A 27037 hgsc.bcm.edu hg19 22 20104104 20104104 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . TRMT2A NM_001257994 exon2 c.A56G p.E19G CTGCTCTCCTGGC . 25.0 7.0 43.0 0.0 . 34 . . . none . . PASS Atlas-SNP PNPLA4 8228 hgsc.bcm.edu hg19 X 7868821 7868821 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . PNPLA4 NM_004650 exon7 c.T668C p.L223P GGAAAAAGGGCTT . 148.0 6.0 240.0 0.0 . 24 . . . none . . PASS Atlas-SNP BCOR 54880 hgsc.bcm.edu hg19 X 39930898 39930898 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . BCOR NM_001123385 exon5 c.T3043C p.Y1015H CACAGTAAGCAGC . 148.0 126.0 234.0 0.0 . 351 . . . none . . PASS Atlas-SNP ND1 10625 hgsc.bcm.edu hg19 MT 3427 3427 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . . ENST00000361390 exon1 c.G121A p.G41S GTTGTAGGCCCCT . 8.0 6.0 28.0 0.0 . . . . . none . . PASS Atlas-SNP SEMG2 6407 hgsc.bcm.edu hg19 20 43850357 43850357 + Frame_Shift_Del DEL A A - novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . SEMG2 NM_003008 exon2 c.83delC p.S28X . . 156.0 87.0 190.0 0.0 . 92 . 0.557692 0 none . . PASS Atlas-Indel,Pindel CTAGE5 4253 hgsc.bcm.edu hg19 14 39777771 39777775 + Frame_Shift_Del DEL AAATG AAATG - novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 AAATG AAATG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . CTAGE5 NM_001247989 exon13 c.1187_1191del p.396_397del . . 211.0 46.0 312.0 0.0 . 75 . 0.218009 0 none . . PASS Atlas-Indel,Pindel MUC2 4583 hgsc.bcm.edu hg19 11 1092801 1092802 + In_Frame_Ins INS - - CCTCCAACA novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . MUC2 NM_002457 exon30 c.4620_4621insCCTCCAACA p.I1540delinsIPPT . . 31.0 13.0 49.0 0.0 . 614 . 0.419355 0 none . . PASS Atlas-INDEL ESF1 51575 hgsc.bcm.edu hg19 20 13763764 13763765 + Frame_Shift_Ins INS - - T novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . ESF1 NM_001276380 exon2 c.23_24insA p.M8fs . . 60.0 17.0 57.0 0.0 . 77 . 0.283333 0 none . . PASS Atlas-Indel,Pindel VWA5B2 90113 hgsc.bcm.edu hg19 3 183958875 183958899 + Frame_Shift_Del DEL CCACTGTTGTCTACTCTAAAGGTAA CCACTGTTGTCTACTCTAAAGGTAA - novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 CCACTGTTGTCTACTCTAAAGGTAA CCACTGTTGTCTACTCTAAAGGTAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 VWA5B2,NS,carcinoma,-1,1 VWA5B2 NM_138345 exon17 c.2941_2962del p.981_988del . . 24.0 19.0 66.0 0.0 . 47 . 0.791667 0 none . . PASS Atlas-Indel,Pindel DAZAP1 26528 hgsc.bcm.edu hg19 19 1418337 1418342 + In_Frame_Del DEL GCCAGC GCCAGC - novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 GCCAGC GCCAGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . DAZAP1 NM_018959 exon3 c.204_209del p.68_70del . . 40.0 14.0 56.0 0.0 . 52 . 0.35 0 none . . PASS Atlas-Indel,Pindel HIVEP1 3096 hgsc.bcm.edu hg19 6 12123780 12123781 + Frame_Shift_Ins INS - - C novel TCGA-UZ-A9PP-01A-11D-A42J-10 TCGA-UZ-A9PP-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b34905a0-79be-4958-821c-f27af735d65e 09c514d0-26ff-4e99-b400-1019a9243565 . HIVEP1 NM_002114 exon4 c.3752_3753insC p.C1251fs . . 43.0 23.0 60.0 0.0 . 242 . 0.534884 0 none . . PASS Atlas-Indel,Pindel