Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TNFRSF8	943	hgsc.bcm.edu	hg19	1	12170173	12170173	+	Silent	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	TNFRSF8	NM_001243	exon6	c.G588T	p.G196G	AAGAGGGGGCACC	.	135.0	69.0	110.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
PAX7	5081	hgsc.bcm.edu	hg19	1	18961677	18961677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PAX7	NM_002584	exon3	c.G394A	p.E132K	AGCTGGGAGATCC	.	193.0	85.0	224.0	0.0	.	127	.	.	.	none	.	.	PASS	Atlas-SNP
GPN2	54707	hgsc.bcm.edu	hg19	1	27216294	27216294	+	Silent	SNP	C	C	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	GPN2	NM_018066	exon1	c.G294A	p.K98K	GTCGAGCTTGGCA	.	100.0	50.0	80.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	hg19	1	39824842	39824842	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	MACF1	NM_012090	exon43	c.A5964T	p.Q1988H	GCACCAAGTACCT	.	308.0	146.0	272.0	1.0	.	909	.	.	.	none	.	.	PASS	Atlas-SNP
RLF	6018	hgsc.bcm.edu	hg19	1	40704556	40704556	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	RLF	NM_012421	exon8	c.G4182C	p.E1394D	TGAAGAGCCTAAA	.	159.0	75.0	127.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
TTC39A	22996	hgsc.bcm.edu	hg19	1	51777848	51777848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	TTC39A	NM_001144832	exon4	c.G310T	p.V104L	CTGTTACAGAAGA	.	50.0	28.0	50.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM33	51592	hgsc.bcm.edu	hg19	1	115006036	115006036	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	TRIM33	NM_033020	exon3	c.C788A	p.S263X	TTACCTGAGACAT	.	123.0	45.0	137.0	0.0	.	115	.	.	.	none	.	.	PASS	Atlas-SNP
NRAS	4893	hgsc.bcm.edu	hg19	1	115251231	115251231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	NRAS	NM_002524	exon5	c.G495T	p.Q165H	TCGGTACTGGCGT	.	130.0	50.0	136.0	0.0	.	3766	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF687	57592	hgsc.bcm.edu	hg19	1	151260816	151260816	+	Silent	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	ZNF687	NM_020832	exon2	c.G2049T	p.R683R	GTGCCGGGACAAG	.	47.0	25.0	39.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
SNX27	81609	hgsc.bcm.edu	hg19	1	151665956	151665956	+	Silent	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	SNX27	NM_030918	exon11	c.A1575G	p.K525K	GAGAAAAGAGGTA	.	81.0	38.0	83.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
LCE6A	448835	hgsc.bcm.edu	hg19	1	152816237	152816237	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	LCE6A	NM_001128600	exon2	c.T241A	p.X81R	GGCGACTGAGCCC	.	187.0	96.0	208.0	1.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
HDGF	3068	hgsc.bcm.edu	hg19	1	156713487	156713487	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	HDGF	NM_001126050	exon5	c.A721T	p.T241S	CCTTGGTAGCCTC	.	45.0	15.0	49.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
PLEKHA6	22874	hgsc.bcm.edu	hg19	1	204237388	204237388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PLEKHA6	NM_014935	exon4	c.T155C	p.M52T	CGCTTCATGGAGT	.	56.0	23.0	54.0	0.0	.	115	.	.	.	none	.	.	PASS	Atlas-SNP
NENF	29937	hgsc.bcm.edu	hg19	1	212617777	212617777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	NENF	NM_013349	exon3	c.A335G	p.H112R	TCACCCATGACAC	.	117.0	46.0	118.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
EPRS	2058	hgsc.bcm.edu	hg19	1	220160681	220160681	+	Silent	SNP	T	T	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	EPRS	NM_004446	exon20	c.A2841T	p.G947G	CTCTACTCCTATC	.	123.0	53.0	84.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
IBA57	200205	hgsc.bcm.edu	hg19	1	228362451	228362451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	IBA57	NM_001010867	exon2	c.G400A	p.G134S	GTGCAGGGCGCGC	.	25.0	11.0	32.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
NCOA1	8648	hgsc.bcm.edu	hg19	2	24896243	24896243	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	NCOA1	NM_147223	exon5	c.A265T	p.T89S	AAATCAACAACTG	.	172.0	67.0	160.0	0.0	.	210	.	.	.	none	.	.	PASS	Atlas-SNP
C2orf71	388939	hgsc.bcm.edu	hg19	2	29295391	29295391	+	Silent	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	C2orf71	NM_001029883	exon1	c.C1737T	p.S579S	TACCGTGCTAGGT	.	67.0	30.0	63.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
SP3	6670	hgsc.bcm.edu	hg19	2	174820133	174820133	+	Silent	SNP	C	C	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	SP3	NM_003111	exon4	c.G1107A	p.Q369Q	ATTTCCCTGAAGA	.	62.0	28.0	68.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179403955	179403955	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	TTN	NM_001267550	exon353	c.C98707G	p.P32903A	CTGGAGGATTGCT	.	99.0	43.0	71.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
PARD3B	117583	hgsc.bcm.edu	hg19	2	206058030	206058030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PARD3B	NM_205863	exon15	c.A2126G	p.K709R	CCTCGAAGAGCAT	.	257.0	126.0	274.0	0.0	.	314	.	.	.	none	.	.	PASS	Atlas-SNP
UGT1A5	54579	hgsc.bcm.edu	hg19	2	234622434	234622434	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	UGT1A5	NM_019078	exon1	c.C797G	p.P266R	ATTACCCCAGGCC	.	73.0	38.0	103.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
MYEOV2	150678	hgsc.bcm.edu	hg19	2	241073396	241073396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	MYEOV2	NM_138336	exon2	c.G183T	p.M61I	CAAGTCCATCAAG	.	70.0	31.0	88.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
GOLGA4	2803	hgsc.bcm.edu	hg19	3	37366995	37366995	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	GOLGA4	NM_001172713	exon15	c.T3684A	p.F1228L	GGAATTTAAAAAA	.	222.0	92.0	243.0	1.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
CCR9	10803	hgsc.bcm.edu	hg19	3	45942619	45942619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	CCR9	NM_031200	exon3	c.G339T	p.K113N	GTGGAAGTTCCAG	.	82.0	34.0	89.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
LSMEM2	0	hgsc.bcm.edu	hg19	3	50324199	50324199	+	Silent	SNP	C	C	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	.	NM_153215	exon3	c.C267T	p.C89C	TGGCTGCAGCCCT	.	38.0	19.0	67.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	hg19	3	113376476	113376476	+	Silent	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	KIAA2018	NM_001009899	exon7	c.C4053T	p.P1351P	CCTGAGGGGGGCT	.	50.0	27.0	60.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
GOLGB1	2804	hgsc.bcm.edu	hg19	3	121413729	121413729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	GOLGB1	NM_001256486	exon13	c.C5641A	p.Q1881K	ATATCTGACTCAG	.	102.0	38.0	98.0	0.0	.	319	.	.	.	none	.	.	PASS	Atlas-SNP
MAGEF1	64110	hgsc.bcm.edu	hg19	3	184428920	184428920	+	Silent	SNP	A	A	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	MAGEF1	NM_022149	exon1	c.T690G	p.P230P	GGTGTGAGGCACC	.	91.0	46.0	104.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
DGKG	1608	hgsc.bcm.edu	hg19	3	185969621	185969621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	DGKG	NM_001346	exon19	c.T1688C	p.I563T	CTGGGGATGACTT	.	97.0	4.0	101.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
PCDH10	57575	hgsc.bcm.edu	hg19	4	134072496	134072496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PCDH10	NM_032961	exon1	c.G1201T	p.V401L	GGAGACGTGCCTT	.	66.0	29.0	72.0	0.0	.	290	.	.	.	none	.	.	PASS	Atlas-SNP
GPM6A	2823	hgsc.bcm.edu	hg19	4	176556203	176556203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	GPM6A	NM_201591	exon7	c.C690A	p.H230Q	AAGGTAGTGAACC	.	28.0	11.0	38.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
WDR17	116966	hgsc.bcm.edu	hg19	4	177098622	177098622	+	Silent	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	WDR17	NM_170710	exon30	c.A3666G	p.R1222R	ATATAGATCATTA	.	100.0	40.0	124.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
PLEKHG4B	153478	hgsc.bcm.edu	hg19	5	163420	163420	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PLEKHG4B	NM_052909	exon11	c.A2165T	p.K722I	AGAAGAAAATGAT	.	86.0	38.0	133.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
PLEKHG4B	153478	hgsc.bcm.edu	hg19	5	163421	163421	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PLEKHG4B	NM_052909	exon11	c.A2166T	p.K722N	GAAGAAAATGATA	.	86.0	39.0	132.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
NIPBL	25836	hgsc.bcm.edu	hg19	5	37049326	37049326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	NIPBL	NM_015384	exon40	c.A6877G	p.T2293A	TTTCACACCCAGT	.	75.0	39.0	72.0	0.0	.	513	.	.	.	none	.	.	PASS	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	hg19	5	66461904	66461904	+	Silent	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	MAST4	NM_001164664	exon29	c.G6897A	p.E2299E	GCTGGAGAAGCCT	.	65.0	21.0	92.0	0.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
CD180	4064	hgsc.bcm.edu	hg19	5	66479076	66479076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	CD180	NM_005582	exon3	c.T1595C	p.L532P	CATGTCAGGCTGT	.	104.0	37.0	117.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
NRG2	9542	hgsc.bcm.edu	hg19	5	139422438	139422438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	NRG2	NM_013982	exon1	c.C217A	p.P73T	TGCGGGGCTGCGG	.	6.0	4.0	3.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGC3	5098	hgsc.bcm.edu	hg19	5	140857046	140857046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PCDHGC3	NM_032402	exon1	c.C1363T	p.P455S	AACCCTCCACAAT	.	211.0	14.0	243.0	0.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
SLC36A2	153201	hgsc.bcm.edu	hg19	5	150726918	150726918	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	SLC36A2	NM_181776	exon1	c.C104G	p.S35C	AATGTAGAGTCCT	.	141.0	61.0	164.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
UIMC1	51720	hgsc.bcm.edu	hg19	5	176395811	176395811	+	Silent	SNP	A	A	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	UIMC1	NM_016290	exon6	c.T945A	p.L315L	TTTATTAAGGAGC	.	92.0	39.0	89.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
VWA7	80737	hgsc.bcm.edu	hg19	6	31744458	31744458	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	.	NM_025258	exon2	c.C99G	p.I33M	GCTCCAGATGTTG	.	80.0	45.0	120.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PPT2	9374	hgsc.bcm.edu	hg19	6	32122818	32122818	+	Silent	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PPT2	NM_138717	exon3	c.G213T	p.G71G	CCCCGGGACTGTG	.	93.0	48.0	96.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
TRERF1	55809	hgsc.bcm.edu	hg19	6	42204006	42204006	+	Silent	SNP	C	C	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	TRERF1	NM_033502	exon16	c.G3003T	p.P1001P	CAGGGGCGGCCCC	.	82.0	33.0	107.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	65301559	65301559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	EYS	NM_001142800	exon26	c.G4201T	p.D1401Y	TAAAATCTGACAT	.	81.0	31.0	77.0	0.0	.	527	.	.	.	none	.	.	PASS	Atlas-SNP
KPNA5	3841	hgsc.bcm.edu	hg19	6	117043373	117043373	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	KPNA5	NM_002269	exon9	c.T841G	p.Y281D	CTTTCTTATCTCT	.	79.0	36.0	84.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
GPRC6A	222545	hgsc.bcm.edu	hg19	6	117127768	117127768	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	GPRC6A	NM_148963	exon3	c.T1100A	p.V367D	TCCTTGACATATG	.	84.0	37.0	61.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
GPR126	57211	hgsc.bcm.edu	hg19	6	142691326	142691326	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	GPR126	NM_198569	exon4	c.T465A	p.N155K	AAGGAATCAAAAG	.	79.0	33.0	108.0	0.0	.	192	.	.	.	none	.	.	PASS	Atlas-SNP
WBSCR28	135886	hgsc.bcm.edu	hg19	7	73280192	73280192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	WBSCR28	NM_182504	exon3	c.C787T	p.P263S	GAAACTCCCAGAG	.	31.0	13.0	28.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82582455	82582455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PCLO	NM_014510	exon5	c.C7814T	p.P2605L	CCCAAGGGCCAAC	.	164.0	108.0	112.0	0.0	.	1506	.	.	.	none	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116423414	116423414	+	Missense_Mutation	SNP	A	A	G	rs121913246	bycluster	TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	MET,rectum,carcinoma,-1,9	MET	NM_001127500	exon19	c.A3743G	p.Y1248C	ACATGTATGATAA	.	133.0	87.0	119.0	0.0	.	412	.	.	.	weak	.	.	PASS	Atlas-SNP
CCDC136	64753	hgsc.bcm.edu	hg19	7	128441373	128441373	+	Silent	SNP	C	C	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	CCDC136	NM_001201372	exon5	c.C630T	p.S210S	GGATTCCGCAACT	.	115.0	41.0	68.0	0.0	.	170	.	.	.	none	.	.	PASS	Atlas-SNP
CPA1	1357	hgsc.bcm.edu	hg19	7	130022030	130022030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	CPA1	NM_001868	exon4	c.C463T	p.R155C	GAAGGGCGTCCCA	.	108.0	6.0	77.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
HEY1	23462	hgsc.bcm.edu	hg19	8	80677948	80677948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	HEY1	NM_001040708	exon5	c.C402G	p.C134W	TGCCAGGCATTCC	.	116.0	45.0	144.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
FAM135B	51059	hgsc.bcm.edu	hg19	8	139165353	139165353	+	Silent	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	FAM135B	NM_015912	exon13	c.T1365C	p.S455S	CCTAAAAGATAAA	.	191.0	76.0	203.0	0.0	.	423	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF16	7564	hgsc.bcm.edu	hg19	8	146156157	146156157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	ZNF16	NM_006958	exon3	c.G2016T	p.L672F	TTTGATCAACTTT	.	37.0	15.0	48.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
HAUS6	54801	hgsc.bcm.edu	hg19	9	19080609	19080609	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	HAUS6	NM_017645	exon9	c.T932A	p.L311X	TCATTTAATAACT	.	194.0	70.0	228.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
GBA2	57704	hgsc.bcm.edu	hg19	9	35741770	35741770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	GBA2	NM_020944	exon4	c.C685T	p.H229Y	GGGCATGGTAGAA	.	72.0	27.0	82.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
CNTNAP3	79937	hgsc.bcm.edu	hg19	9	39144299	39144299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	CNTNAP3	NM_033655	exon11	c.C1694T	p.S565L	TCCCACGACTGGG	.	632.0	235.0	630.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
C9orf47	286223	hgsc.bcm.edu	hg19	9	91606554	91606554	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	C9orf47	NM_001001938	exon2	c.A416C	p.H139P	CCCGGCACCGCCG	.	19.0	12.0	18.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
RNF20	56254	hgsc.bcm.edu	hg19	9	104302568	104302568	+	Silent	SNP	A	A	G	rs150763272		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	RNF20	NM_019592	exon3	c.A213G	p.E71E	AGATGAACTTCGT	.	106.0	60.0	112.0	0.0	.	110	.	.	.	weak	A|1.000;G|0.000	0.000	PASS	Atlas-SNP
TSC1	7248	hgsc.bcm.edu	hg19	9	135787825	135787825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	TSC1	NM_000368	exon9	c.C757A	p.H253N	CATCATGAGTTTC	.	40.0	15.0	50.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
PRPF18	8559	hgsc.bcm.edu	hg19	10	13658405	13658405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PRPF18	NM_003675	exon9	c.A800G	p.D267G	CAAATGATGCTTA	.	58.0	22.0	49.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	hg19	10	29769500	29769500	+	Silent	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	SVIL	NM_021738	exon29	c.T5343C	p.Y1781Y	GACCACATAGGCA	.	96.0	44.0	106.0	0.0	.	226	.	.	.	none	.	.	PASS	Atlas-SNP
SLC16A12	387700	hgsc.bcm.edu	hg19	10	91203518	91203518	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	SLC16A12	NM_213606	exon4	c.T299C	p.L100P	CCACAGAGCATGG	.	80.0	31.0	77.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
MGEA5	10724	hgsc.bcm.edu	hg19	10	103577714	103577714	+	Silent	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	MGEA5	NM_001142434	exon1	c.C66T	p.A22A	AGAGGCGGCAGGG	.	39.0	16.0	25.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
PHRF1	57661	hgsc.bcm.edu	hg19	11	598434	598434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PHRF1	NM_020901	exon9	c.G956A	p.G319D	CGACTGGCCTGAG	.	24.0	8.0	31.0	0.0	.	188	.	.	.	none	.	.	PASS	Atlas-SNP
EPS8L2	64787	hgsc.bcm.edu	hg19	11	721127	721127	+	Silent	SNP	C	C	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	EPS8L2	NM_022772	exon8	c.C621A	p.P207P	GGCGCCCATCCCC	.	13.0	6.0	16.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
OR51D1	390038	hgsc.bcm.edu	hg19	11	4661416	4661416	+	Silent	SNP	T	T	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	OR51D1	NM_001004751	exon1	c.T396C	p.A132A	CATGGCTTTTGAC	.	91.0	31.0	104.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
CSNK2A3	283106	hgsc.bcm.edu	hg19	11	11374645	11374645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	.	NM_001256686	exon1	c.A22G	p.R8G	TGGCCCTGCTTGG	.	121.0	50.0	121.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
FERMT3	83706	hgsc.bcm.edu	hg19	11	63978141	63978141	+	Silent	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	FERMT3	NM_031471	exon3	c.G219A	p.L73L	GTGGCTGCTGCAG	.	138.0	55.0	144.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD13D	338692	hgsc.bcm.edu	hg19	11	67057877	67057877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	ANKRD13D	NM_207354	exon3	c.G311A	p.R104K	CGCAGAGGCTGGC	.	96.0	27.0	93.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
PAK1	5058	hgsc.bcm.edu	hg19	11	77103498	77103498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PAK1	NM_001128620	exon2	c.T68C	p.M23T	CCAATCATAGTGC	.	78.0	37.0	76.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
MLL	4297	hgsc.bcm.edu	hg19	11	118366483	118366483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	MLL	NM_001197104	exon19	c.G5432A	p.R1811Q	AGGAGCGAGAGGA	.	153.0	68.0	184.0	0.0	.	548	.	.	.	none	.	.	PASS	Atlas-SNP
VWF	7450	hgsc.bcm.edu	hg19	12	6120943	6120943	+	Silent	SNP	G	G	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	VWF	NM_000552	exon34	c.C5682G	p.T1894T	TGGCAAGGTCCAG	.	249.0	110.0	245.0	0.0	.	338	.	.	.	none	.	.	PASS	Atlas-SNP
CLEC4D	338339	hgsc.bcm.edu	hg19	12	8672900	8672900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	CLEC4D,NS,carcinoma,0,1	CLEC4D	NM_080387	exon5	c.C463T	p.R155C	CAGTGGCGTTGGG	.	71.0	5.0	86.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
MAGOHB	55110	hgsc.bcm.edu	hg19	12	10762497	10762497	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	MAGOHB	NM_018048	exon3	c.T197G	p.I66S	TCATCAATAATTC	.	60.0	32.0	57.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRR	5801	hgsc.bcm.edu	hg19	12	71155251	71155251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PTPRR	NM_002849	exon4	c.G627T	p.E209D	ACATACCTCAGGA	.	83.0	37.0	73.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
DTX1	1840	hgsc.bcm.edu	hg19	12	113531444	113531444	+	Silent	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	DTX1	NM_004416	exon4	c.G1104T	p.V368V	CGACGTGAAGCCC	.	42.0	21.0	56.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
KCTD12	115207	hgsc.bcm.edu	hg19	13	77459491	77459491	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	KCTD12	NM_138444	exon1	c.C793G	p.R265G	TGTAGCGCTCCGG	.	40.0	11.0	48.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
CPNE6	9362	hgsc.bcm.edu	hg19	14	24546923	24546923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	CPNE6	NM_006032	exon16	c.C1658A	p.P553H	CGACTCCCAGCCC	.	45.0	18.0	51.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
TXNDC16	57544	hgsc.bcm.edu	hg19	14	52899033	52899033	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	TXNDC16	NM_020784	exon21	c.A2467T	p.K823X	TCACTTTTGAGCA	.	56.0	27.0	67.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
YLPM1	56252	hgsc.bcm.edu	hg19	14	75265567	75265567	+	Silent	SNP	T	T	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	YLPM1	NM_019589	exon5	c.T3567C	p.P1189P	GCCTCCTAGGGCT	.	62.0	32.0	92.0	0.0	.	298	.	.	.	none	.	.	PASS	Atlas-SNP
C14orf159	80017	hgsc.bcm.edu	hg19	14	91642285	91642285	+	Silent	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	C14orf159	NM_001102368	exon7	c.G615A	p.L205L	ACTGTTGGGAATC	.	81.0	34.0	107.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102514292	102514292	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	DYNC1H1	NM_001376	exon73	c.C13145G	p.T4382S	TGCACACCACCGC	.	29.0	14.0	22.0	0.0	.	395	.	.	.	none	.	.	PASS	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28457714	28457714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	HERC2	NM_004667	exon43	c.T6802C	p.F2268L	CATTAAAGGCCAC	.	178.0	70.0	219.0	0.0	.	501	.	.	.	none	.	.	PASS	Atlas-SNP
CALML4	91860	hgsc.bcm.edu	hg19	15	68489951	68489951	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	CALML4	NM_033429	exon4	c.T320G	p.L107R	AAATCCAGCTCTC	.	52.0	15.0	40.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD34C	390616	hgsc.bcm.edu	hg19	15	79587013	79587013	+	Silent	SNP	C	C	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	ANKRD34C	NM_001146341	exon2	c.C1387T	p.L463L	GGCTTCCTGCCGC	.	69.0	32.0	96.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJA3	9093	hgsc.bcm.edu	hg19	16	4504895	4504895	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	DNAJA3	NM_005147	exon11	c.A1423T	p.K475X	AAACTTAAGAAAA	.	87.0	40.0	111.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
NT5M	56953	hgsc.bcm.edu	hg19	17	17248204	17248204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	NT5M	NM_020201	exon4	c.G526A	p.D176N	ATAGACGACCGGC	.	96.0	55.0	73.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
FLII	2314	hgsc.bcm.edu	hg19	17	18160230	18160230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	FLII	NM_001256265	exon2	c.A167G	p.Q56R	AGCTTCTGCAGGG	.	57.0	18.0	34.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
SLFN5	162394	hgsc.bcm.edu	hg19	17	33588032	33588032	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	SLFN5	NM_144975	exon3	c.C1055A	p.S352X	GTTTGTCATCTGC	.	170.0	108.0	150.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
PGAP3	93210	hgsc.bcm.edu	hg19	17	37829901	37829901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PGAP3	NM_033419	exon6	c.C560A	p.T187N	CCCACGGTCCTGC	.	64.0	39.0	52.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
GSDMA	284110	hgsc.bcm.edu	hg19	17	38122087	38122087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	GSDMA	NM_178171	exon2	c.G147T	p.W49C	CTTCTGGGGGGCC	.	101.0	68.0	73.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
ACLY	47	hgsc.bcm.edu	hg19	17	40049362	40049362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	ACLY	NM_001096	exon15	c.G1525A	p.V509M	CTTGCACGGCCCG	.	100.0	4.0	87.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
INTS2	57508	hgsc.bcm.edu	hg19	17	59952339	59952339	+	Silent	SNP	C	C	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	INTS2,NS,carcinoma,0,1	INTS2	NM_020748	exon19	c.G2541A	p.K847K	AGTATACTTTTGT	.	124.0	38.0	107.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D16	125058	hgsc.bcm.edu	hg19	17	77923648	77923648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	TBC1D16	NM_019020	exon7	c.G1274A	p.G425D	TCAATACCGCCAA	.	131.0	43.0	84.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
TNFRSF11A	8792	hgsc.bcm.edu	hg19	18	60052147	60052147	+	Silent	SNP	C	C	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	TNFRSF11A	NM_003839	exon10	c.C1731T	p.R577R	GGCGCGCCGAGAC	.	27.0	12.0	17.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
CHAF1A	10036	hgsc.bcm.edu	hg19	19	4433229	4433229	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	CHAF1A	NM_005483	exon13	c.A2366T	p.D789V	GCGAGGATGCCGC	.	71.0	30.0	65.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
FARSA	2193	hgsc.bcm.edu	hg19	19	13035292	13035292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	FARSA	NM_004461	exon11	c.C1244T	p.P415L	ATGCTGGGCTCTG	.	30.0	13.0	25.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
FARSA	2193	hgsc.bcm.edu	hg19	19	13035306	13035306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	FARSA	NM_004461	exon11	c.C1230A	p.N410K	GTATGGGTTGTAG	.	32.0	13.0	26.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF552	79818	hgsc.bcm.edu	hg19	19	58319468	58319468	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	ZNF552,NS,carcinoma,0,1	ZNF552	NM_024762	exon3	c.A1164T	p.K388N	CCTAAATTTTTTT	.	115.0	54.0	127.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
LPIN3	64900	hgsc.bcm.edu	hg19	20	39978760	39978760	+	Silent	SNP	T	T	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	LPIN3	NM_022896	exon7	c.T825C	p.P275P	CTCTCCTCCTCGG	.	91.0	51.0	94.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
COL20A1	57642	hgsc.bcm.edu	hg19	20	61940011	61940011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	COL20A1	NM_020882	exon8	c.C893T	p.T298I	TGCACACTGCTGC	.	67.0	37.0	90.0	0.0	.	137	.	.	.	none	.	.	PASS	Atlas-SNP
USP25	29761	hgsc.bcm.edu	hg19	21	17172133	17172133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	USP25	NM_013396	exon6	c.A613G	p.N205D	CCATCAAATGCTC	.	171.0	67.0	184.0	0.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
BACH1	571	hgsc.bcm.edu	hg19	21	30715024	30715024	+	Missense_Mutation	SNP	G	G	A	rs377002114	bycluster	TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	BACH1,NS,carcinoma,0,1	BACH1	NM_206866	exon5	c.G2081A	p.R694Q	ACGCGCGAGGGCA	.	69.0	36.0	87.0	0.0	.	66	.	.	.	weak	.	.	PASS	Atlas-SNP
SIM2	6493	hgsc.bcm.edu	hg19	21	38084911	38084911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	SIM2	NM_005069	exon3	c.G337T	p.G113C	CATTTAGGCTTAT	.	59.0	26.0	45.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41559859	41559859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	DSCAM	NM_001271534	exon13	c.C2609T	p.S870F	CCATAAGAATTAA	.	57.0	22.0	94.0	0.0	.	347	.	.	.	none	.	.	PASS	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	hg19	21	46875847	46875847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	COL18A1	NM_030582	exon1	c.G403A	p.E135K	CCCACTGAGAGCT	.	130.0	61.0	131.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
SREBF2	6721	hgsc.bcm.edu	hg19	22	42281013	42281013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	SREBF2	NM_004599	exon11	c.G2206T	p.A736S	TTCCTGGCCGTGA	.	79.0	41.0	104.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
FMR1	2332	hgsc.bcm.edu	hg19	X	147014033	147014033	+	Silent	SNP	T	T	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	FMR1	NM_002024	exon8	c.T720C	p.N240N	TGCTAATATTCAG	.	328.0	141.0	364.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
LIMA1	51474	hgsc.bcm.edu	hg19	12	50571335	50571336	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	LIMA1,NS,carcinoma,0,1	LIMA1	NM_001113546	exon11	c.1795_1796insT	p.Q599fs	.	.	50.0	22.0	65.0	0.0	.	67	.	0.44	0	none	.	.	PASS	Atlas-Indel,Pindel
OR52M1	119772	hgsc.bcm.edu	hg19	11	4566635	4566636	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	OR52M1	NM_001004137	exon1	c.215_216insC	p.D72fs	.	.	98.0	40.0	95.0	0.0	.	53	.	0.408163	0	none	.	.	PASS	Atlas-Indel,Pindel
ITGAX	3687	hgsc.bcm.edu	hg19	16	31391906	31391908	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	ITGAX	NM_000887	exon28	c.3236_3238del	p.1079_1080del	.	.	95.0	36.0	95.0	0.0	.	198	.	0.378947	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF491	126069	hgsc.bcm.edu	hg19	19	11917180	11917180	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	ZNF491	NM_152356	exon3	c.411delG	p.G137fs	.	.	88.0	35.0	76.0	0.0	.	61	.	0.397727	0	none	.	.	PASS	Atlas-Indel,Pindel
GLMN	11146	hgsc.bcm.edu	hg19	1	92731987	92731988	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	GLMN,colon,carcinoma,0,1	GLMN	NM_053274	exon13	c.1203_1204insA	p.Y401_T402delinsX	.	.	196.0	79.0	199.0	0.0	.	37	.	0.403061	0	none	.	.	PASS	Atlas-Indel,Pindel
RABGGTB	5876	hgsc.bcm.edu	hg19	1	76257870	76257871	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	RABGGTB	NM_004582	exon7	c.584_585insTT	p.Y195fs	.	.	55.0	16.0	52.0	0.0	.	37	.	0.290909	0	none	.	.	PASS	Atlas-Indel,Pindel
BRCA1	672	hgsc.bcm.edu	hg19	17	41243848	41243848	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	BRCA1	NM_007300	exon10	c.3701delT	p.V1234fs	.	.	139.0	78.0	132.0	0.0	.	304	.	0.561151	0	none	.	.	PASS	Atlas-Indel,Pindel
ADAMTS17	170691	hgsc.bcm.edu	hg19	15	100882071	100882071	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	ADAMTS17	NM_139057	exon1	c.35delT	p.L12fs	.	.	74.0	23.0	85.0	0.0	.	127	.	0.310811	0	none	.	.	PASS	Atlas-Indel,Pindel
APAF1	317	hgsc.bcm.edu	hg19	12	99109218	99109218	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	APAF1	NM_181861	exon22	c.2971delG	p.V991X	.	.	40.0	16.0	44.0	0.0	.	111	.	0.4	0	none	.	.	PASS	Atlas-Indel,Pindel
C11orf80	79703	hgsc.bcm.edu	hg19	11	66610424	66610425	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	C11orf80	NM_024650	exon16	c.1852_1853insC	p.A618fs	.	.	43.0	19.0	47.0	0.0	.	31	.	0.44186	0	none	.	.	PASS	Atlas-Indel,Pindel
PREX1	57580	hgsc.bcm.edu	hg19	20	47261019	47261023	+	Frame_Shift_Del	DEL	GATTG	GATTG	-	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	GATTG	GATTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PREX1	NM_020820	exon27	c.3526_3530del	p.1176_1177del	.	.	61.0	14.0	94.0	0.0	.	441	.	0.229508	0	none	.	.	PASS	Atlas-INDEL
ANKRD30A	91074	hgsc.bcm.edu	hg19	10	37508624	37508625	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	ANKRD30A	NM_052997	exon34	c.3816_3817insA	p.S1272fs	.	.	203.0	92.0	186.0	0.0	.	448	.	0.453202	0	none	.	.	PASS	Atlas-Indel,Pindel
LINS	55180	hgsc.bcm.edu	hg19	15	101120996	101120997	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	LINS	NM_001040616	exon2	c.52_53insT	p.G18fs	.	.	80.0	42.0	93.0	0.0	.	62	.	0.525	0	none	.	.	PASS	Atlas-Indel,Pindel
PREX1	57580	hgsc.bcm.edu	hg19	20	47261025	47261033	+	In_Frame_Del	DEL	TGTTACACT	TGTTACACT	-	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	TGTTACACT	TGTTACACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PREX1	NM_020820	exon27	c.3516_3524del	p.1172_1175del	.	.	57.0	14.0	94.0	0.0	.	441	.	0.245614	0	none	.	.	PASS	Atlas-INDEL
MASP2	10747	hgsc.bcm.edu	hg19	1	11105002	11105002	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	MASP2	NM_139208	exon5	c.554delT	p.L185fs	.	.	119.0	56.0	142.0	0.0	.	71	.	0.470588	0	none	.	.	PASS	Atlas-Indel,Pindel
DACH2	117154	hgsc.bcm.edu	hg19	X	85906115	85906115	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	DACH2	NM_053281	exon4	c.716delG	p.G239fs	.	.	237.0	106.0	228.0	0.0	.	263	.	0.447257	0	none	.	.	PASS	Atlas-Indel,Pindel
PLCD1	5333	hgsc.bcm.edu	hg19	3	38053124	38053124	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PLCD1	NM_001130964	exon4	c.533delA	p.D178fs	.	.	111.0	49.0	134.0	0.0	.	87	.	0.441441	0	none	.	.	PASS	Atlas-Indel,Pindel
ALG2	85365	hgsc.bcm.edu	hg19	9	101980479	101980480	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	ALG2	NM_033087	exon2	c.988_989insT	p.V330fs	.	.	145.0	68.0	171.0	0.0	.	37	.	0.468966	0	none	.	.	PASS	Atlas-Indel,Pindel
FOXN1	8456	hgsc.bcm.edu	hg19	17	26861931	26861932	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	FOXN1	NM_003593	exon7	c.1341_1342del	p.447_448del	.	.	188.0	42.0	160.0	0.0	.	51	.	0.223404	0	none	.	.	PASS	Atlas-Indel,Pindel
TTN	7273	hgsc.bcm.edu	hg19	2	179480386	179480388	+	In_Frame_Del	DEL	TTA	TTA	-	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	TTA	TTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	TTN	NM_001267550	exon258	c.48441_48443del	p.16147_16148del	.	.	167.0	49.0	177.0	0.0	.	18412	.	0.293	.	none	.	.	PASS	Pindel
PREX1	57580	hgsc.bcm.edu	hg19	20	47261019	47261033	+	In_Frame_Del	DEL	GATTGCTGTTACACT	GATTGCTGTTACACT	-	novel		TCGA-SX-A71S-01A-11D-A33Q-10	TCGA-SX-A71S-10A-01D-A33Q-10	GATTGCTGTTACACT	GATTGCTGTTACACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	158b7380-c848-4b01-a581-e79ff31ca48f	0175a079-c143-46a1-975c-4d940bd28bc4	.	PREX1	NM_020820	exon27	c.3516_3530del	p.1172_1177del	.	.	62.0	19.0	92.0	0.0	.	441	.	0.306	.	none	.	.	PASS	Pindel