Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
MASP2	10747	hgsc.bcm.edu	hg19	1	11090277	11090277	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	MASP2	NM_006610	exon10	c.G1253C	p.W418S	CTCGTCCAGAATC	.	69.0	27.0	87.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
KCNT2	343450	hgsc.bcm.edu	hg19	1	196288615	196288615	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	KCNT2	NM_198503	exon20	c.A2347C	p.N783H	CCTACTTGTCAAT	.	77.0	34.0	108.0	0.0	.	243	.	.	.	none	.	.	PASS	Atlas-SNP
DENND1B	163486	hgsc.bcm.edu	hg19	1	197479793	197479793	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	DENND1B	NM_001195215	exon23	c.C2125T	p.Q709X	AAATCTGGCTTAG	.	137.0	56.0	139.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	hg19	2	50280612	50280612	+	Missense_Mutation	SNP	T	T	G	rs201877761	bycluster;alternate_allele	TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	NRXN1	NM_001135659	exon22	c.A4045C	p.N1349H	CCATATTCAGAAC	.	57.0	26.0	104.0	0.0	.	1118	.	.	.	alt	T|0.999;C|0.001	.	PASS	Atlas-SNP
KCNH8	131096	hgsc.bcm.edu	hg19	3	19479828	19479828	+	Silent	SNP	C	C	T	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	KCNH8	NM_144633	exon8	c.C1350T	p.F450F	GATCTTCTCCATC	.	110.0	52.0	129.0	0.0	.	189	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A7	9497	hgsc.bcm.edu	hg19	3	27477880	27477880	+	Silent	SNP	T	T	C	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	SLC4A7	NM_001258379	exon5	c.A576G	p.A192A	ATAACCTGCTATT	.	80.0	40.0	98.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
VEPH1	79674	hgsc.bcm.edu	hg19	3	157081265	157081265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	VEPH1	NM_001167911	exon9	c.A1623G	p.I541M	GTATTCTATAGGA	.	189.0	73.0	185.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
HNRNPD	3184	hgsc.bcm.edu	hg19	4	83279841	83279841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	HNRNPD	NM_031370	exon4	c.A592G	p.I198V	CCCTTATTTTCTC	.	113.0	55.0	139.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
HERC6	55008	hgsc.bcm.edu	hg19	4	89361148	89361148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	HERC6	NM_017912	exon21	c.C2678A	p.P893H	TCTACCCTGAAGA	.	131.0	58.0	169.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJC18	202052	hgsc.bcm.edu	hg19	5	138758461	138758461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	DNAJC18	NM_152686	exon6	c.G715T	p.V239L	TAATCACAATCAC	.	230.0	89.0	250.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGA4	56111	hgsc.bcm.edu	hg19	5	140736033	140736033	+	Silent	SNP	A	A	T	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	PCDHGA4	NM_018917	exon1	c.A1266T	p.V422V	CACTGTAACTGCC	.	70.0	32.0	95.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
SKIV2L	6499	hgsc.bcm.edu	hg19	6	31932058	31932058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	SKIV2L	NM_006929	exon17	c.G1910A	p.S637N	ACCATAGCGGCAT	.	62.0	26.0	81.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
GSTA1	2938	hgsc.bcm.edu	hg19	6	52656735	52656735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	GSTA1	NM_145740	exon7	c.T590G	p.F197C	TGTAGAAACTTCT	.	75.0	41.0	93.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
HBS1L	10767	hgsc.bcm.edu	hg19	6	135358073	135358073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	HBS1L	NM_001145207	exon5	c.G1522A	p.D508N	ATGGGTCTACTAC	.	128.0	55.0	159.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
MRPL32	64983	hgsc.bcm.edu	hg19	7	42974719	42974719	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	MRPL32	NM_031903	exon2	c.A296G	p.K99R	CGCAGAAGCTTAT	.	210.0	56.0	129.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
EPHB6	2051	hgsc.bcm.edu	hg19	7	142562102	142562102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	EPHB6	NM_004445	exon7	c.G544A	p.G182R	GCTGTGGGACCCC	.	115.0	82.0	98.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
RRAGA	10670	hgsc.bcm.edu	hg19	9	19050301	19050301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	RRAGA	NM_006570	exon1	c.C644T	p.S215F	TTATTTCCCACTA	.	95.0	40.0	100.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
FBP2	8789	hgsc.bcm.edu	hg19	9	97329630	97329630	+	Silent	SNP	A	A	T	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	FBP2	NM_003837	exon5	c.T627A	p.I209I	GCTGTAAATCTTT	.	65.0	26.0	74.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
SWAP70	23075	hgsc.bcm.edu	hg19	11	9746244	9746244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	SWAP70	NM_015055	exon4	c.G454A	p.G152R	ATGGGAGGAGGTT	.	108.0	56.0	121.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF17	9828	hgsc.bcm.edu	hg19	11	73021391	73021391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	ARHGEF17	NM_014786	exon1	c.G1708A	p.E570K	TCCTCCGAGCTCC	.	54.0	25.0	84.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
XRRA1	143570	hgsc.bcm.edu	hg19	11	74563097	74563097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	XRRA1	NM_182969	exon13	c.G1177A	p.A393T	AGAGAGCTACTGG	.	73.0	26.0	117.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
PCSK7	9159	hgsc.bcm.edu	hg19	11	117097999	117097999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	PCSK7	NM_004716	exon5	c.G643A	p.D215N	TGGGGTCAGGGTC	.	58.0	27.0	99.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
BCDIN3D	144233	hgsc.bcm.edu	hg19	12	50232321	50232321	+	Silent	SNP	A	A	G	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	BCDIN3D	NM_181708	exon2	c.T712C	p.L238L	GGGTCAAGATCTG	.	64.0	36.0	84.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC59	29080	hgsc.bcm.edu	hg19	12	82752072	82752072	+	Silent	SNP	C	C	T	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	CCDC59	NM_014167	exon1	c.G84A	p.R28R	CTTATTCCTGTAC	.	81.0	29.0	76.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
RAN	5901	hgsc.bcm.edu	hg19	12	131360202	131360202	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	RAN	NM_006325	exon6	c.T481G	p.F161V	AAGCCCTTCCTCT	.	117.0	58.0	126.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
CENPJ	55835	hgsc.bcm.edu	hg19	13	25486722	25486722	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	CENPJ	NM_018451	exon2	c.C442T	p.Q148X	GTACCTGTTCAAG	.	57.0	30.0	91.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
CHD8	57680	hgsc.bcm.edu	hg19	14	21862288	21862288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	CHD8	NM_001170629	exon31	c.G5666A	p.R1889H	TCTATACGGTAGA	.	35.0	15.0	30.0	0.0	.	339	.	.	.	none	.	.	PASS	Atlas-SNP
STRN3	29966	hgsc.bcm.edu	hg19	14	31382758	31382758	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	STRN3	NM_001083893	exon10	c.T1346A	p.V449E	TTTGTTACCGTCA	.	102.0	49.0	104.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
TRPM1	4308	hgsc.bcm.edu	hg19	15	31327765	31327765	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	TRPM1	NM_001252020	exon20	c.T2735A	p.L912X	TTCTCTAACGCCA	.	72.0	39.0	79.0	0.0	.	183	.	.	.	none	.	.	PASS	Atlas-SNP
SLC7A5	8140	hgsc.bcm.edu	hg19	16	87902587	87902587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	SLC7A5	NM_003486	exon1	c.G442T	p.V148L	GGGCCACGATGTA	.	195.0	61.0	190.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
ALKBH5	54890	hgsc.bcm.edu	hg19	17	18088007	18088007	+	Silent	SNP	C	C	T	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	ALKBH5	NM_017758	exon1	c.C450T	p.P150P	CGGGCCCGGCCAG	.	137.0	40.0	115.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
EVPLL	645027	hgsc.bcm.edu	hg19	17	18284974	18284974	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	EVPLL	NM_001145127	exon4	c.C276G	p.Y92X	CCTGTACGAGAAG	.	112.0	35.0	124.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
EVI2B	2124	hgsc.bcm.edu	hg19	17	29632360	29632360	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	EVI2B	NM_006495	exon2	c.G268C	p.E90Q	GTTTTTCAGAAGA	.	275.0	98.0	268.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
NAT9	26151	hgsc.bcm.edu	hg19	17	72768111	72768111	+	Silent	SNP	A	A	G	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	NAT9	NM_015654	exon6	c.T477C	p.L159L	AAAGTGAAGTTTC	.	182.0	110.0	151.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11144020	11144020	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	SMARCA4	NM_003072	exon26	c.G3601C	p.V1201L	GTGCGTGTGCTCC	.	164.0	83.0	216.0	0.0	.	502	.	.	.	none	.	.	PASS	Atlas-SNP
CYP4F3	4051	hgsc.bcm.edu	hg19	19	15752326	15752326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	CYP4F3	NM_001199209	exon2	c.T101G	p.I34S	CCCGCATCCTGGC	.	98.0	39.0	150.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
TTC3	7267	hgsc.bcm.edu	hg19	21	38494269	38494269	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	TTC3	NM_001001894	exon12	c.A1053T	p.E351D	AATAGAAGACCTA	.	205.0	92.0	267.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
MTM1	4534	hgsc.bcm.edu	hg19	X	149767104	149767104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	MTM1	NM_000252	exon4	c.G185T	p.R62I	AGGGAAGAGTTTA	.	297.0	272.0	356.0	1.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54884994	54884994	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	SPTBN1	NM_003128	exon30	c.6053delA	p.E2018fs	.	.	67.0	31.0	99.0	0.0	.	378	.	0.462687	0	none	.	.	PASS	Atlas-Indel,Pindel
CACNA1E	777	hgsc.bcm.edu	hg19	1	181695257	181695258	+	Frame_Shift_Ins	INS	-	-	GAGGTCA	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	CACNA1E	NM_000721	exon18	c.2199_2200insGAGGTCA	p.K733fs	.	.	78.0	23.0	101.0	0.0	.	778	.	0.294872	0	none	.	.	PASS	Atlas-Indel,Pindel
MAML2	84441	hgsc.bcm.edu	hg19	11	95826617	95826617	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-SX-A71R-01A-12D-A33Q-10	TCGA-SX-A71R-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c23b8a50-fec8-4f6d-86be-42ae4bb3feee	25cf82fb-bcef-43f2-866b-078527b0881a	.	MAML2	NM_032427	exon2	c.579delT	p.N193fs	.	.	138.0	63.0	167.0	0.0	.	94	.	0.456522	0	none	.	.	PASS	Atlas-Indel,Pindel