Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
KIF1B	23095	hgsc.bcm.edu	hg19	1	10435400	10435400	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	KIF1B	NM_015074	exon46	c.G5239C	p.A1747P	TTGTATGCCTTCA	.	150.0	34.0	178.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
DHDDS	79947	hgsc.bcm.edu	hg19	1	26759444	26759444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	DHDDS	NM_001243564	exon2	c.G8T	p.W3L	TGTCATGGATCAA	.	134.0	42.0	140.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
GON4L	54856	hgsc.bcm.edu	hg19	1	155785662	155785662	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	GON4L	NM_001037533	exon8	c.A1095T	p.E365D	ATCTTCTTCAAGG	.	205.0	51.0	171.0	0.0	.	392	.	.	.	none	.	.	PASS	Atlas-SNP
KDM3A	55818	hgsc.bcm.edu	hg19	2	86693629	86693629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	KDM3A	NM_001146688	exon10	c.A1142G	p.K381R	ACTTGAAAATTCT	.	129.0	40.0	81.0	0.0	.	179	.	.	.	none	.	.	PASS	Atlas-SNP
ADAM23	8745	hgsc.bcm.edu	hg19	2	207457453	207457453	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	ADAM23	NM_003812	exon22	c.G2071C	p.D691H	GTGATTGACTGCA	.	155.0	9.0	232.0	0.0	.	239	.	.	.	none	.	.	PASS	Atlas-SNP
ZPLD1	131368	hgsc.bcm.edu	hg19	3	102171980	102171980	+	Silent	SNP	G	G	A	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	ZPLD1	NM_175056	exon3	c.G372A	p.L124L	CAACCTGGTGGTA	.	77.0	13.0	88.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
TNFSF10	8743	hgsc.bcm.edu	hg19	3	172232753	172232753	+	Silent	SNP	A	A	G	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	TNFSF10	NM_003810	exon2	c.T168C	p.C56C	TAAGAAACAAGCA	.	109.0	27.0	110.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC39	339829	hgsc.bcm.edu	hg19	3	180379790	180379790	+	Silent	SNP	A	A	G	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	CCDC39	NM_181426	exon3	c.T216C	p.L72L	TTTGCAAAGAGAC	.	269.0	59.0	207.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
CHRD	8646	hgsc.bcm.edu	hg19	3	184099117	184099117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	CHRD	NM_003741	exon3	c.A347G	p.Q116R	CGCGCCAGCTGCC	.	154.0	40.0	176.0	0.0	.	149	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF721	170960	hgsc.bcm.edu	hg19	4	436272	436272	+	Silent	SNP	T	T	A	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	ZNF721	NM_133474	exon3	c.T1984T	p.L662L	TAAGAATTTTCGT	.	339.0	94.0	271.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
TRIP13	9319	hgsc.bcm.edu	hg19	5	914652	914652	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	TRIP13	NM_004237	exon11	c.A1093T	p.N365Y	GAAAACAACGTGT	.	42.0	10.0	63.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
PGBD1	84547	hgsc.bcm.edu	hg19	6	28268788	28268788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	PGBD1	NM_001184743	exon7	c.C1157T	p.P386L	GTTTCCCAGAAAA	.	67.0	17.0	79.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
HOXA2	3199	hgsc.bcm.edu	hg19	7	27140420	27140420	+	Silent	SNP	T	T	A	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	HOXA2	NM_006735	exon2	c.A1056T	p.V352V	AATATCTACGGGA	.	201.0	52.0	174.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
DPY19L1	23333	hgsc.bcm.edu	hg19	7	35006553	35006553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	DPY19L1	NM_015283	exon10	c.G826A	p.G276R	TGTACCCGACAAC	.	209.0	11.0	216.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
TRAPPC9	83696	hgsc.bcm.edu	hg19	8	141468506	141468506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	TRAPPC9	NM_031466	exon1	c.G158A	p.G53E	TGACTCCCACGGT	.	83.0	17.0	66.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
OR52J3	119679	hgsc.bcm.edu	hg19	11	5067977	5067977	+	Silent	SNP	C	C	G	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	OR52J3	NM_001001916	exon1	c.C222G	p.A74A	TTTGGCCCTTTCT	.	191.0	29.0	186.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
PLCB3	5331	hgsc.bcm.edu	hg19	11	64033788	64033788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	PLCB3	NM_000932	exon28	c.G3268A	p.E1090K	TCCAGGGAGAAGA	.	28.0	7.0	28.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
MMP28	79148	hgsc.bcm.edu	hg19	17	34122300	34122300	+	Missense_Mutation	SNP	C	C	T	rs201598708	bycluster;alternate_allele	TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	MMP28	NM_001032278	exon1	c.G82A	p.G28R	GGCCTCCGCGCTC	.	41.0	13.0	48.0	0.0	.	41	.	.	.	alt	.	.	PASS	Atlas-SNP
CBX4	8535	hgsc.bcm.edu	hg19	17	77807917	77807917	+	Silent	SNP	T	T	C	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.,1	CBX4	NM_003655	exon5	c.A1524G	p.A508A	TGCCGCTGCCGCC	.	49.0	4.0	96.0	1.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
CBX4	8535	hgsc.bcm.edu	hg19	17	77807927	77807927	+	Missense_Mutation	SNP	A	A	G	rs200965379		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	CBX4,uveal_tract,malignant_melanoma,0,1	CBX4	NM_003655	exon5	c.T1514C	p.V505A	GCCGCCACCGCCA	.	38.0	10.0	85.0	0.0	.	40	.	.	.	weak	.	.	PASS	Atlas-SNP
PALM3	342979	hgsc.bcm.edu	hg19	19	14164996	14164996	+	Silent	SNP	C	C	T	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	PALM3	NM_001145028	exon6	c.G1443A	p.E481E	TTCTACCTCCTCC	.	186.0	11.0	170.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
PALM3	342979	hgsc.bcm.edu	hg19	19	14164997	14164997	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	PALM3	NM_001145028	exon6	c.A1442T	p.E481V	TCTACCTCCTCCT	.	190.0	13.0	170.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
ATF5	22809	hgsc.bcm.edu	hg19	19	50436034	50436034	+	Silent	SNP	G	G	T	rs367836750	alternate_allele	TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	ATF5	NM_012068	exon4	c.G534T	p.P178P	GATGCCGCCTCTG	.	58.0	14.0	52.0	0.0	.	27	.	.	.	alt	.	.	PASS	Atlas-SNP
ZNF584	201514	hgsc.bcm.edu	hg19	19	58928550	58928550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	ZNF584	NM_173548	exon4	c.C665A	p.A222D	GGAAGGCCTTCAG	.	113.0	19.0	114.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
SEC23B	10483	hgsc.bcm.edu	hg19	20	18529410	18529410	+	Missense_Mutation	SNP	C	C	T	rs372083109		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	SEC23B	NM_032985	exon16	c.C1901T	p.P634L	GGCCACCAGAGGT	.	126.0	33.0	125.0	0.0	.	70	.	.	.	weak	.	.	PASS	Atlas-SNP
ZMYND8	23613	hgsc.bcm.edu	hg19	20	45878117	45878117	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	ZMYND8	NM_183047	exon13	c.T1688G	p.V563G	AGAGGAACAGGGG	.	100.0	30.0	101.0	0.0	.	166	.	.	.	none	.	.	PASS	Atlas-SNP
HELZ2	85441	hgsc.bcm.edu	hg19	20	62196757	62196757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	.	NM_001037335	exon9	c.G3418A	p.E1140K	CCCGCTCGAAGGT	.	41.0	16.0	59.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
EFCAB6	64800	hgsc.bcm.edu	hg19	22	44064754	44064754	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	EFCAB6	NM_022785	exon16	c.G1812C	p.E604D	TTACCTCTCAGAA	.	299.0	70.0	303.0	0.0	.	177	.	.	.	none	.	.	PASS	Atlas-SNP
SEPT6	23157	hgsc.bcm.edu	hg19	X	118809562	118809562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	SEPT6	NM_145802	exon2	c.A100G	p.N34D	ACTTATTCACCAG	.	187.0	53.0	158.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	6575	6575	+	Silent	SNP	A	A	G	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	.	ENST00000361624	exon1	c.A672G	p.G224G	CGCCGGAGGAGGA	.	64.0	55.0	10.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM13	10206	hgsc.bcm.edu	hg19	13	50588496	50588497	+	RNA	INS	-	-	ATACAC	rs10676627	alternate_allele	TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	TRIM13	.	.	.	.	.	.	50.0	13.0	44.0	0.0	.	30	.	0.26	0	alt	.	.	PASS	Atlas-INDEL
TRIM13	10206	hgsc.bcm.edu	hg19	13	50589227	50589252	+	RNA	DEL	AAAAATATATATATATATATATATAT	AAAAATATATATATATATATATATAT	-	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	AAAAATATATATATATATATATATAT	AAAAATATATATATATATATATATAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	TRIM13	.	.	.	.	.	.	72.0	21.0	41.0	0.0	.	30	.	0.291667	0	none	.	.	PASS	Atlas-INDEL
CDK11B	984	hgsc.bcm.edu	hg19	1	1577073	1577078	+	In_Frame_Del	DEL	TCCTCT	TCCTCT	-	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	TCCTCT	TCCTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	CDK11B	NM_033486	exon9	c.949_954del	p.317_318del	.	.	108.0	10.0	87.0	0.0	.	37	.	0.093	.	none	.	.	PASS	Pindel
CDK11A	728642	hgsc.bcm.edu	hg19	1	1640283	1640288	+	In_Frame_Del	DEL	TCCTCT	TCCTCT	-	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	TCCTCT	TCCTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	CDK11A	NM_024011	exon9	c.949_954del	p.317_318del	.	.	85.0	12.0	114.0	0.0	.	38	.	0.141	.	none	.	.	PASS	Pindel
CNTLN	54875	hgsc.bcm.edu	hg19	9	17298345	17298346	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MH-A855-01A-11D-A34Z-10	TCGA-MH-A855-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45f692dd-7c11-4489-9e41-a3288880bb92	d3dee4f3-5666-47be-8e2e-f75389de1c43	.	CNTLN	NM_017738	exon7	c.1141_1142insA	p.Q381fs	.	.	225.0	49.0	252.0	0.0	.	128	.	0.218	.	none	.	.	PASS	Pindel