Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm DDI2 84301 hgsc.bcm.edu hg19 1 15956839 15956839 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DDI2 NM_032341 exon3 c.C288T p.F96F AGATTTCAGTAGT . 133.0 66.0 168.0 0.0 . 38 . . . none . . PASS Atlas-SNP MSH4 4438 hgsc.bcm.edu hg19 1 76269502 76269502 + Missense_Mutation SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a MSH4,NS,carcinoma,0,1 MSH4 NM_002440 exon2 c.G331A p.D111N GCACGAGATACTA . 110.0 52.0 60.0 0.0 . 147 . . . none . . PASS Atlas-SNP LRRC8C 84230 hgsc.bcm.edu hg19 1 90180228 90180228 + Missense_Mutation SNP C C A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . LRRC8C NM_032270 exon3 c.C2099A p.P700H TCCCCCCTGAAAT . 77.0 29.0 43.0 0.0 . 73 . . . none . . PASS Atlas-SNP RBM15 64783 hgsc.bcm.edu hg19 1 110882978 110882978 + Silent SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . RBM15 NM_022768 exon1 c.T951C p.P317P GCCCCCTCCACCT . 112.0 53.0 214.0 1.0 . 93 . . . none . . PASS Atlas-SNP ANKRD35 148741 hgsc.bcm.edu hg19 1 145561688 145561688 + Missense_Mutation SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ANKRD35 NM_144698 exon10 c.A1376G p.Q459R CTGACCAGCTGCC . 113.0 48.0 169.0 0.0 . 96 . . . none . . PASS Atlas-SNP MAEL 84944 hgsc.bcm.edu hg19 1 166974561 166974561 + Missense_Mutation SNP C C A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MAEL NM_032858 exon8 c.C772A p.L258I AAATTTCTCAAGG . 62.0 28.0 33.0 0.0 . 95 . . . none . . PASS Atlas-SNP CNTN2 6900 hgsc.bcm.edu hg19 1 205028742 205028742 + Silent SNP C C A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CNTN2 NM_005076 exon7 c.C729A p.A243A CAAGGCCCGGTTC . 155.0 53.0 287.0 0.0 . 116 . . . none . . PASS Atlas-SNP AHCTF1 25909 hgsc.bcm.edu hg19 1 247070995 247070995 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . AHCTF1 NM_015446 exon5 c.G649A p.G217R GGCGCCCTTGTCT . 124.0 58.0 62.0 0.0 . 187 . . . none . . PASS Atlas-SNP OR2L8 391190 hgsc.bcm.edu hg19 1 248112473 248112473 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . OR2L8 NM_001001963 exon1 c.C314T p.A105V TCTTGGCATTAGG . 393.0 140.0 233.0 0.0 . 92 . . . none . . PASS Atlas-SNP LPIN1 23175 hgsc.bcm.edu hg19 2 11960558 11960558 + Missense_Mutation SNP G G C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . LPIN1 NM_001261428 exon21 c.G2686C p.V896L AAGCAAGTAGGAG . 74.0 28.0 51.0 0.0 . 99 . . . none . . PASS Atlas-SNP LPIN1 23175 hgsc.bcm.edu hg19 2 11960560 11960560 + Silent SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . LPIN1 NM_001261428 exon21 c.A2688G p.V896V GCAAGTAGGAGTG . 75.0 29.0 50.0 0.0 . 99 . . . none . . PASS Atlas-SNP KIF3C 3797 hgsc.bcm.edu hg19 2 26178417 26178417 + Missense_Mutation SNP A A C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . KIF3C NM_002254 exon3 c.T1763G p.L588R TTCTTGAGTTTCT . 155.0 62.0 299.0 0.0 . 79 . . . none . . PASS Atlas-SNP CLIP4 79745 hgsc.bcm.edu hg19 2 29379236 29379236 + Silent SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a CLIP4,colon,carcinoma,0,1 CLIP4 NM_024692 exon10 c.A1182G p.K394K ATCAAAAAAAGAT . 47.0 2.0 22.0 0.0 . 69 . . . none . . PASS Atlas-SNP PLEKHH2 130271 hgsc.bcm.edu hg19 2 43953471 43953471 + Missense_Mutation SNP G G T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PLEKHH2 NM_172069 exon17 c.G2602T p.D868Y TCTTGTGATTCAG . 74.0 27.0 42.0 0.0 . 156 . . . none . . PASS Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84777109 84777109 + Silent SNP A A T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DNAH6 NM_001370 exon9 c.A1413T p.L471L CAAGCTAAAACGA . 66.0 25.0 34.0 0.0 . 194 . . . none . . PASS Atlas-SNP MCM6 4175 hgsc.bcm.edu hg19 2 136620201 136620201 + Missense_Mutation SNP C C A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MCM6 NM_005915 exon8 c.G1196T p.S399I GCTGTACTTGGGT . 180.0 78.0 142.0 0.0 . 64 . . . none . . PASS Atlas-SNP MCM6 4175 hgsc.bcm.edu hg19 2 136620202 136620202 + Missense_Mutation SNP T T G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MCM6 NM_005915 exon8 c.A1195C p.S399R CTGTACTTGGGTC . 179.0 78.0 142.0 0.0 . 64 . . . none . . PASS Atlas-SNP ATG9A 79065 hgsc.bcm.edu hg19 2 220090289 220090289 + Missense_Mutation SNP A A C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ATG9A NM_001077198 exon6 c.T218G p.F73C AAGAGGAACTGCC . 59.0 22.0 63.0 0.0 . 50 . . . none . . PASS Atlas-SNP SPHKAP 80309 hgsc.bcm.edu hg19 2 228860230 228860230 + Silent SNP G G C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SPHKAP NM_030623 exon8 c.C4629G p.S1543S CCTCATGGATCGC . 283.0 107.0 298.0 1.0 . 750 . . . none . . PASS Atlas-SNP CAMK1 8536 hgsc.bcm.edu hg19 3 9802445 9802445 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a CAMK1,NS,carcinoma,0,1 CAMK1 NM_003656 exon8 c.G640A p.G214S GGTAACCGCAGAG . 46.0 22.0 76.0 0.0 . 32 . . . none . . PASS Atlas-SNP ARIH2OS 646450 hgsc.bcm.edu hg19 3 48956091 48956091 + Silent SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . . NM_001123040 exon1 c.A492T p.P164P AGACGCTGGTAGG . 58.0 34.0 100.0 0.0 . . . . . none . . PASS Atlas-SNP ARHGEF3 50650 hgsc.bcm.edu hg19 3 56789065 56789065 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ARHGEF3 NM_001128615 exon6 c.A415T p.T139S CGAAGGTCTCACT . 184.0 87.0 267.0 1.0 . 128 . . . none . . PASS Atlas-SNP RNF13 11342 hgsc.bcm.edu hg19 3 149678575 149678575 + Missense_Mutation SNP C C G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . RNF13 NM_007282 exon11 c.C830G p.T277S AAAAAACCTGTCC . 69.0 24.0 61.0 0.0 . 57 . . . none . . PASS Atlas-SNP GABRA2 2555 hgsc.bcm.edu hg19 4 46312218 46312218 + Silent SNP A A T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . GABRA2 NM_000807 exon6 c.T531A p.A177A TGAATGAGCATCC . 125.0 52.0 67.0 0.0 . 134 . . . none . . PASS Atlas-SNP GALNTL6 442117 hgsc.bcm.edu hg19 4 173269759 173269759 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . GALNTL6 NM_001034845 exon5 c.C472T p.R158W CTCCTGCGGACCA . 171.0 88.0 73.0 0.0 . 102 . . . none . . PASS Atlas-SNP SLC9A3 6550 hgsc.bcm.edu hg19 5 476140 476140 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SLC9A3 NM_004174 exon14 c.A2135T p.E712V CCTTTCTCCTTGA . 24.0 9.0 77.0 0.0 . 89 . . . none . . PASS Atlas-SNP ADAMTS16 170690 hgsc.bcm.edu hg19 5 5235155 5235155 + Missense_Mutation SNP G G C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ADAMTS16 NM_139056 exon13 c.G1879C p.G627R TGTGAGGGCTCCA . 81.0 34.0 126.0 0.0 . 543 . . . none . . PASS Atlas-SNP IL7R 3575 hgsc.bcm.edu hg19 5 35876145 35876145 + Missense_Mutation SNP G G T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . IL7R NM_002185 exon8 c.G937T p.D313Y GTGGATGACATTC . 87.0 37.0 62.0 0.0 . 200 . . . none . . PASS Atlas-SNP PPIC 5480 hgsc.bcm.edu hg19 5 122359696 122359696 + Silent SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PPIC NM_000943 exon5 c.A513T p.T171T CACCACTGTCTGG . 188.0 76.0 177.0 0.0 . 18 . . . none . . PASS Atlas-SNP PCDHA8 56140 hgsc.bcm.edu hg19 5 140223201 140223201 + Silent SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PCDHA8 NM_031856 exon1 c.G2295A p.P765P GCCACCGAAGACG . 40.0 32.0 64.0 0.0 . 366 . . . none . . PASS Atlas-SNP PCDHGA12 26025 hgsc.bcm.edu hg19 5 140811805 140811805 + Silent SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PCDHGA12 NM_032094 exon1 c.G1479A p.E493E GGCTGAGAACACC . 87.0 36.0 161.0 0.0 . 271 . . . none . . PASS Atlas-SNP LARP1 23367 hgsc.bcm.edu hg19 5 154183178 154183178 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . LARP1 NM_015315 exon13 c.T2081A p.V694D CCACTGTCCCAGA . 64.0 29.0 98.0 0.0 . 187 . . . none . . PASS Atlas-SNP PANK3 79646 hgsc.bcm.edu hg19 5 167995656 167995656 + Missense_Mutation SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a PANK3,NS,carcinoma,0,2 PANK3 NM_024594 exon2 c.C376T p.R126C CTGTGCGAAAATC . 102.0 36.0 71.0 0.0 . 39 . . . none . . PASS Atlas-SNP DHX16 8449 hgsc.bcm.edu hg19 6 30640454 30640454 + Silent SNP G G T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DHX16 NM_003587 exon1 c.C165A p.L55L CCCACTGAGATCC . 66.0 24.0 174.0 0.0 . 119 . . . none . . PASS Atlas-SNP DHX16 8449 hgsc.bcm.edu hg19 6 30640464 30640464 + Missense_Mutation SNP G G T rs375439029 alternate_allele TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DHX16 NM_003587 exon1 c.C155A p.T52N TCCAAGGTATCAG . 70.0 23.0 177.0 0.0 . 119 . . . alt . . PASS Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90426453 90426453 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MDN1 NM_014611 exon44 c.G6659A p.G2220D AATGTGCCATGGC . 94.0 38.0 73.0 0.0 . 478 . . . none . . PASS Atlas-SNP SIM1 6492 hgsc.bcm.edu hg19 6 100895187 100895187 + Missense_Mutation SNP A A T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SIM1 NM_005068 exon8 c.T955A p.S319T TGGAGGAGCGACT . 59.0 22.0 100.0 0.0 . 173 . . . none . . PASS Atlas-SNP AHR 196 hgsc.bcm.edu hg19 7 17362177 17362177 + Missense_Mutation SNP A A T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . AHR NM_001621 exon3 c.A306T p.R102S CTGTAGAGCAGCA . 102.0 47.0 24.0 0.0 . 89 . . . none . . PASS Atlas-SNP PDE1C 5137 hgsc.bcm.edu hg19 7 31877507 31877507 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PDE1C NM_001191058 exon11 c.G1239A p.K413K AGCAGTCTTCATT . 416.0 169.0 130.0 0.0 . 465 . . . none . . PASS Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82579067 82579067 + Missense_Mutation SNP C C A rs370030206 TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PCLO NM_014510 exon6 c.G10837T p.A3613S AAGGAGCCAGCTG . 234.0 127.0 87.0 0.0 . 1506 . . . weak . . PASS Atlas-SNP MET 4233 hgsc.bcm.edu hg19 7 116422117 116422117 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a MET,NS,carcinoma,0,1 MET NM_001127500 exon18 c.T3652A p.F1218I AAAAAGTTTGTCC . 75.0 31.0 22.0 0.0 . 412 . . . none . . PASS Atlas-SNP CHRNB3 1142 hgsc.bcm.edu hg19 8 42565553 42565553 + Missense_Mutation SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CHRNB3 NM_000749 exon3 c.G225A p.M75I GCTGATGACAACC . 37.0 21.0 44.0 0.0 . 74 . . . none . . PASS Atlas-SNP RBM12B 389677 hgsc.bcm.edu hg19 8 94747484 94747484 + Silent SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . RBM12B NM_203390 exon3 c.T1155C p.H385H TGAAACATGTCCG . 236.0 96.0 133.0 0.0 . 78 . . . none . . PASS Atlas-SNP VPS13B 157680 hgsc.bcm.edu hg19 8 100514063 100514063 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . VPS13B NM_152564 exon26 c.C4019T p.P1340L TTGCTCCAGATCC . 140.0 54.0 111.0 0.0 . 811 . . . none . . PASS Atlas-SNP FAM208B 54906 hgsc.bcm.edu hg19 10 5788364 5788364 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . . NM_017782 exon15 c.T2980C p.S994P CAGAGCTCTGTGT . 113.0 55.0 80.0 0.0 . . . . . none . . PASS Atlas-SNP C1QL3 389941 hgsc.bcm.edu hg19 10 16556595 16556595 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . C1QL3 NM_001010908 exon2 c.G700A p.G234R CTTTCCCGCCATC . 118.0 47.0 101.0 0.0 . 27 . . . none . . PASS Atlas-SNP API5 8539 hgsc.bcm.edu hg19 11 43342441 43342441 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . API5 NM_006595 exon3 c.T302C p.I101T CAGATATACTAAC . 93.0 42.0 65.0 0.0 . 91 . . . none . . PASS Atlas-SNP OR8I2 120586 hgsc.bcm.edu hg19 11 55861616 55861616 + Missense_Mutation SNP C C T rs140206966 bycluster;byfrequency;alternate_allele TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a OR8I2,NS,carcinoma,0,2 OR8I2 NM_001003750 exon1 c.C833T p.T278M TCTATACGATTGT . 96.0 8.0 52.0 0.0 . 119 . . . alt C|0.999;A|0.001 . PASS Atlas-SNP HNRNPUL2 221092 hgsc.bcm.edu hg19 11 62488862 62488862 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . HNRNPUL2 NM_001079559 exon9 c.A1516G p.K506E GGCTTTTGGGGTC . 214.0 87.0 180.0 0.0 . 41 . . . none . . PASS Atlas-SNP PCF11 51585 hgsc.bcm.edu hg19 11 82877727 82877727 + Silent SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PCF11 NM_015885 exon5 c.A1788G p.R596R CAAAAGATGGAAA . 135.0 65.0 67.0 0.0 . 220 . . . none . . PASS Atlas-SNP NCAM1 4684 hgsc.bcm.edu hg19 11 113078684 113078684 + Missense_Mutation SNP G G C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . NCAM1 NM_001242608 exon8 c.G876C p.K292N GAACAAGGCTGGC . 20.0 6.0 27.0 0.0 . 372 . . . none . . PASS Atlas-SNP C3AR1 719 hgsc.bcm.edu hg19 12 8211578 8211578 + Missense_Mutation SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . C3AR1 NM_004054 exon2 c.C1204T p.L402F CAGTAAGCAATGA . 67.0 8.0 69.0 0.0 . 61 . . . none . . PASS Atlas-SNP ESPL1 9700 hgsc.bcm.edu hg19 12 53687232 53687232 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ESPL1 NM_012291 exon31 c.T6337C p.Y2113H ATAGCCTATGGCT . 97.0 45.0 133.0 0.0 . 158 . . . none . . PASS Atlas-SNP ALDH2 217 hgsc.bcm.edu hg19 12 112227694 112227694 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ALDH2 NM_000690 exon5 c.T508C p.Y170H TTCAGCTACACAC . 61.0 21.0 81.0 0.0 . 91 . . . none . . PASS Atlas-SNP HNF1A 6927 hgsc.bcm.edu hg19 12 121437158 121437158 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . HNF1A NM_000545 exon8 c.T1589C p.L530P CCAACCTGAGCGC . 116.0 54.0 399.0 0.0 . 302 . . . none . . PASS Atlas-SNP BRCA2 675 hgsc.bcm.edu hg19 13 32907353 32907353 + Missense_Mutation SNP A A C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . BRCA2 NM_000059 exon10 c.A1738C p.I580L GGTTTAATATCCA . 93.0 49.0 55.0 0.0 . 812 . . . none . . PASS Atlas-SNP ESD 2098 hgsc.bcm.edu hg19 13 47354151 47354151 + Silent SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ESD NM_001984 exon8 c.T519C p.A173A AATTGGAGCAAAT . 101.0 42.0 76.0 0.0 . 23 . . . none . . PASS Atlas-SNP OR11G2 390439 hgsc.bcm.edu hg19 14 20666034 20666034 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . OR11G2 NM_001005503 exon1 c.C540T p.T180T CTGTACCAATCTT . 112.0 39.0 63.0 0.0 . 73 . . . none . . PASS Atlas-SNP C14orf37 145407 hgsc.bcm.edu hg19 14 58563683 58563683 + Missense_Mutation SNP C C G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . C14orf37 NM_001001872 exon5 c.G1848C p.E616D TTCATCCTCATCT . 55.0 27.0 31.0 0.0 . 87 . . . none . . PASS Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64596614 64596614 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SYNE2 NM_182914 exon75 c.T14134A p.L4712I TACAAATTAGAGG . 59.0 29.0 54.0 0.0 . 577 . . . none . . PASS Atlas-SNP TTC8 123016 hgsc.bcm.edu hg19 14 89307438 89307438 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . TTC8 NM_144596 exon5 c.T387A p.S129R GCAGAGTGGAAGG . 127.0 52.0 114.0 0.0 . 42 . . . none . . PASS Atlas-SNP CDC42BPB 9578 hgsc.bcm.edu hg19 14 103438368 103438368 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CDC42BPB NM_006035 exon13 c.A1772T p.K591M TTCTGCTTCTGGG . 132.0 60.0 293.0 0.0 . 123 . . . none . . PASS Atlas-SNP CEP170B 283638 hgsc.bcm.edu hg19 14 105353612 105353612 + Missense_Mutation SNP T T G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . . NM_001112726 exon12 c.T3036G p.H1012Q GCAGCATCACCCA . 35.0 14.0 74.0 0.0 . . . . . none . . PASS Atlas-SNP CATSPER2 117155 hgsc.bcm.edu hg19 15 43928412 43928412 + Missense_Mutation SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CATSPER2 NM_054020 exon8 c.T848C p.L283P TTCGGGAGGTCCC . 73.0 28.0 52.0 0.0 . 49 . . . none . . PASS Atlas-SNP NEO1 4756 hgsc.bcm.edu hg19 15 73590713 73590713 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . NEO1 NM_002499 exon27 c.C3926T p.T1309I CCAGCACTGACAC . 70.0 36.0 88.0 0.0 . 102 . . . none . . PASS Atlas-SNP IREB2 3658 hgsc.bcm.edu hg19 15 78755356 78755356 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . IREB2 NM_004136 exon3 c.T199A p.L67I AACATTTTAGACT . 183.0 75.0 107.0 0.0 . 106 . . . none . . PASS Atlas-SNP KIAA1199 57214 hgsc.bcm.edu hg19 15 81166242 81166242 + Missense_Mutation SNP G G C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a KIAA1199,NS,carcinoma,0,1 KIAA1199 NM_018689 exon2 c.G22C p.D8H AGGCAGGACTTCC . 8.0 2.0 15.0 0.0 . 118 . . . none . . PASS Atlas-SNP SRCAP 10847 hgsc.bcm.edu hg19 16 30733505 30733505 + Missense_Mutation SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SRCAP NM_006662 exon22 c.G3604A p.G1202R AATGCAGGGGGAA . 102.0 38.0 245.0 0.0 . 298 . . . none . . PASS Atlas-SNP CDH8 1006 hgsc.bcm.edu hg19 16 61851550 61851550 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CDH8 NM_001796 exon7 c.G1110A p.G370G AAAGGGCCCCCTG . 90.0 44.0 82.0 0.0 . 273 . . . none . . PASS Atlas-SNP CDT1 81620 hgsc.bcm.edu hg19 16 88872437 88872437 + Missense_Mutation SNP G G A rs368718178 TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CDT1 NM_030928 exon6 c.G841A p.G281R GCTGACGGAGCAG . 12.0 5.0 36.0 0.0 . 30 . . . weak . . PASS Atlas-SNP MAP2K4 6416 hgsc.bcm.edu hg19 17 12016635 12016635 + Silent SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MAP2K4 NM_003010 exon7 c.T771C p.S257S GGACTCTATTGCC . 159.0 104.0 81.0 0.0 . 176 . . . none . . PASS Atlas-SNP NAGLU 4669 hgsc.bcm.edu hg19 17 40695935 40695935 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . NAGLU NM_000263 exon6 c.C1911T p.F637F CGATTTCTACGAG . 21.0 10.0 43.0 0.0 . 36 . . . none . . PASS Atlas-SNP LSM12 124801 hgsc.bcm.edu hg19 17 42117589 42117589 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . LSM12 NM_152344 exon4 c.G294A p.K98K GCTCAGCTTCTCC . 67.0 42.0 60.0 0.0 . 16 . . . none . . PASS Atlas-SNP AMH 268 hgsc.bcm.edu hg19 19 2249551 2249551 + Missense_Mutation SNP G G T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . AMH NM_000479 exon1 c.G220T p.G74W GTGGTGGGGGCTC . 11.0 6.0 33.0 0.0 . 12 . . . none . . PASS Atlas-SNP CLEC4M 10332 hgsc.bcm.edu hg19 19 7832420 7832420 + Missense_Mutation SNP A A T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a CLEC4M,NS,carcinoma,0,1 CLEC4M NM_014257 exon6 c.A955T p.T319S CTGCAGACTTCCA . 90.0 6.0 100.0 0.0 . 58 . . . none . . PASS Atlas-SNP SNPH 9751 hgsc.bcm.edu hg19 20 1286555 1286555 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SNPH NM_014723 exon6 c.C1342T p.R448W TCCCAGCGGCGCC . 13.0 7.0 33.0 0.0 . 89 . . . none . . PASS Atlas-SNP BRWD1 54014 hgsc.bcm.edu hg19 21 40641908 40641908 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . BRWD1 NM_018963 exon15 c.A1447T p.I483F ACATAATTCTGGA . 48.0 26.0 20.0 0.0 . 325 . . . none . . PASS Atlas-SNP PDE9A 5152 hgsc.bcm.edu hg19 21 44152003 44152003 + Missense_Mutation SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PDE9A NM_002606 exon5 c.A386G p.E129G AGGTAGAGCCCAG . 50.0 26.0 121.0 0.0 . 69 . . . none . . PASS Atlas-SNP SPECC1L 23384 hgsc.bcm.edu hg19 22 24734414 24734414 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SPECC1L NM_001145468 exon9 c.C2621T p.T874I TGAAAACCCCTCC . 216.0 89.0 242.0 0.0 . 85 . . . none . . PASS Atlas-SNP GGT1 2678 hgsc.bcm.edu hg19 22 25023938 25023938 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . GGT1 NM_013430 exon13 c.T1328C p.I443T ATTTCATCCAGCC . 99.0 48.0 225.0 0.0 . 68 . . . none . . PASS Atlas-SNP CHKB 1120 hgsc.bcm.edu hg19 22 51018475 51018475 + Silent SNP A A C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CHKB NM_005198 exon8 c.T855G p.V285V ATCATAAACCCAC . 134.0 54.0 125.0 0.0 . 40 . . . none . . PASS Atlas-SNP DUSP6 1848 hgsc.bcm.edu hg19 12 89743102 89743107 + In_Frame_Del DEL CTGGAA CTGGAA - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 CTGGAA CTGGAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DUSP6 NM_001946 exon3 c.1071_1076del p.357_359del . . 129.0 41.0 146.0 0.0 . 30 . 0.317829 0 none . . PASS Atlas-INDEL ITGB1 3688 hgsc.bcm.edu hg19 10 33201013 33201013 + Frame_Shift_Del DEL G G - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ITGB1 NM_133376 exon12 c.1510delA p.T504fs . . 95.0 41.0 69.0 0.0 . 156 . 0.431579 0 none . . PASS Atlas-INDEL MBOAT2 129642 hgsc.bcm.edu hg19 2 9002791 9002791 + Frame_Shift_Del DEL A A - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MBOAT2 NM_138799 exon11 c.1115delG p.W372fs . . 86.0 39.0 61.0 0.0 . 36 . 0.453488 0 none . . PASS Atlas-INDEL POTEF 728378 hgsc.bcm.edu hg19 2 130872496 130872496 + Frame_Shift_Del DEL T T - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a POTEF,NS,carcinoma,0,2 POTEF NM_001099771 exon5 c.769delG p.A257fs . . 114.0 18.0 91.0 0.0 . 140 . 0.157895 0 none . . PASS Atlas-INDEL TPP1 1200 hgsc.bcm.edu hg19 11 6638089 6638089 + Frame_Shift_Del DEL A A - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . TPP1 NM_000391 exon7 c.690delC p.F230fs . . 103.0 54.0 171.0 0.0 . 71 . 0.524272 0 none . . PASS Atlas-INDEL SRCAP 10847 hgsc.bcm.edu hg19 16 30733503 30733503 + Frame_Shift_Del DEL C C - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SRCAP NM_006662 exon22 c.3601delG p.A1201fs . . 97.0 33.0 238.0 0.0 . 298 . 0.340206 0 none . . PASS Atlas-INDEL REV3L 5980 hgsc.bcm.edu hg19 6 111695488 111695488 + Frame_Shift_Del DEL T T - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . REV3L NM_002912 exon13 c.4071delT p.N1357fs . . 134.0 52.0 55.0 0.0 . 386 . 0.38806 0 none . . PASS Atlas-INDEL CD97 976 hgsc.bcm.edu hg19 19 14518917 14518918 + Frame_Shift_Ins INS - - A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CD97 NM_078481 exon20 c.2492_2493insA p.S831fs . . 47.0 18.0 98.0 0.0 . 86 . 0.382979 0 none . . PASS Atlas-INDEL RBKS 64080 hgsc.bcm.edu hg19 2 28004505 28004506 + Frame_Shift_Ins INS - - T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . RBKS NM_022128 exon8 c.946_947insA p.D316fs . . 134.0 42.0 108.0 0.0 . 23 . 0.313433 0 none . . PASS Atlas-INDEL ATP8B2 57198 hgsc.bcm.edu hg19 1 154314963 154314968 + In_Frame_Del DEL GTTTGA GTTTGA - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 GTTTGA GTTTGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ATP8B2 NM_020452 exon14 c.1349_1354del p.450_452del . . 67.0 13.0 101.0 0.0 . 158 . 0.19403 0 none . . PASS Atlas-INDEL TNF 7124 hgsc.bcm.edu hg19 6 31545047 31545049 + In_Frame_Del DEL CCC CCC - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 CCC CCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . TNF NM_000594 exon4 c.434_436del p.145_146del . . 119.0 42.0 259.0 0.0 . 15 . 0.352941 0 none . . PASS Atlas-INDEL CTTNBP2 83992 hgsc.bcm.edu hg19 7 117431390 117431391 + Frame_Shift_Ins INS - - C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CTTNBP2 NM_033427 exon4 c.1860_1861insG p.T620fs . . 103.0 55.0 102.0 0.0 . 200 . 0.533981 0 none . . PASS Atlas-INDEL POTEE 445582 hgsc.bcm.edu hg19 2 131981572 131981572 + Frame_Shift_Del DEL A A - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . . NM_001083538 exon3 c.765delC p.A255fs . . 131.0 29.0 69.0 0.0 . . . 0.221374 0 none . . PASS Atlas-INDEL DAXX 1616 hgsc.bcm.edu hg19 6 33287821 33287822 + Frame_Shift_Ins INS - - A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DAXX NM_001141970 exon5 c.1468_1469insT p.E490_E491delinsX . . 22.0 10.0 30.0 0.0 . 111 . 0.454545 0 none . . PASS Atlas-INDEL