Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
KIAA1614	57710	hgsc.bcm.edu	hg19	1	180885553	180885553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	KIAA1614	NM_020950	exon2	c.C314T	p.S105F	CCTGCTCTGCTTC	.	108.0	44.0	162.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
TRMT1L	81627	hgsc.bcm.edu	hg19	1	185094118	185094118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TRMT1L	NM_030934	exon12	c.A1717T	p.S573C	ACTGACTTTGAGG	.	112.0	42.0	125.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
GCSAML	148823	hgsc.bcm.edu	hg19	1	247737622	247737622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_145278	exon5	c.T346C	p.S116P	AGGACTTCTGTTA	.	89.0	36.0	107.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ASAP2	8853	hgsc.bcm.edu	hg19	2	9528579	9528579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ASAP2	NM_001135191	exon22	c.T2287C	p.Y763H	GAGACTTACGGAG	.	49.0	22.0	92.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A1AP	22950	hgsc.bcm.edu	hg19	2	27888159	27888159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SLC4A1AP	NM_018158	exon2	c.A1018G	p.M340V	TGGGGAATGGGTA	.	120.0	56.0	147.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
GPR75	10936	hgsc.bcm.edu	hg19	2	54080607	54080607	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	GPR75	NM_006794	exon2	c.T1287C	p.S429S	GTAGGCAGAGTTT	.	190.0	49.0	303.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
USP39	10713	hgsc.bcm.edu	hg19	2	85875075	85875075	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	USP39	NM_001256725	exon12	c.T1586G	p.L529X	ATGAATTACAAGA	.	102.0	44.0	100.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
MBD5	55777	hgsc.bcm.edu	hg19	2	149248040	149248040	+	Silent	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MBD5	NM_018328	exon12	c.A4140C	p.P1380P	TAGACCAAGGACG	.	109.0	51.0	150.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
PAX3	5077	hgsc.bcm.edu	hg19	2	223066673	223066673	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PAX3	NM_181457	exon8	c.G1410A	p.Q470Q	TCCATACTGCCCA	.	82.0	8.0	123.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
CELSR3	1951	hgsc.bcm.edu	hg19	3	48690562	48690562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CELSR3	NM_001407	exon10	c.T5507G	p.L1836R	AGAAGGAGATGGG	.	65.0	28.0	153.0	0.0	.	237	.	.	.	none	.	.	PASS	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	hg19	3	130292932	130292932	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	COL6A6	NM_001102608	exon7	c.T3110A	p.V1037E	ACAGAGTGCGAAT	.	41.0	20.0	65.0	0.0	.	497	.	.	.	none	.	.	PASS	Atlas-SNP
LRPAP1	4043	hgsc.bcm.edu	hg19	4	3519768	3519768	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	LRPAP1	NM_002337	exon5	c.T744C	p.T248T	AGCCTCAGTGCTG	.	41.0	13.0	66.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D19	55296	hgsc.bcm.edu	hg19	4	26737100	26737100	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TBC1D19	NM_018317	exon16	c.T1108A	p.S370T	GGATTTTCAATGT	.	22.0	7.0	15.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
AFF1	4299	hgsc.bcm.edu	hg19	4	88029381	88029381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	AFF1	NM_001166693	exon11	c.G1447T	p.D483Y	ACCAGTGACTCAG	.	64.0	24.0	94.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
SEC24B	10427	hgsc.bcm.edu	hg19	4	110415933	110415933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SEC24B	NM_006323	exon6	c.A1409G	p.Y470C	CTGGTTATCAGAA	.	144.0	59.0	188.0	0.0	.	186	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM2	23321	hgsc.bcm.edu	hg19	4	154215496	154215496	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TRIM2	NM_015271	exon5	c.A645T	p.E215D	CTCTGAAATCATT	.	83.0	33.0	113.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155225827	155225827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	DCHS2	NM_017639	exon17	c.A4234G	p.I1412V	CAATTATGTGATA	.	48.0	23.0	55.0	0.0	.	594	.	.	.	none	.	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187539116	187539116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	FAT1	NM_005245	exon10	c.T8624C	p.L2875P	TGGTCAAGTTCCT	.	67.0	26.0	100.0	0.0	.	500	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A19	340024	hgsc.bcm.edu	hg19	5	1219640	1219640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SLC6A19	NM_001003841	exon10	c.T1399C	p.F467L	GGGACATTCCTCA	.	51.0	20.0	81.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
TRIO	7204	hgsc.bcm.edu	hg19	5	14497016	14497016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TRIO	NM_007118	exon50	c.C7909A	p.R2637S	GCACTCCGTTTAA	.	80.0	35.0	100.0	0.0	.	305	.	.	.	none	.	.	PASS	Atlas-SNP
POLK	51426	hgsc.bcm.edu	hg19	5	74892358	74892358	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	POLK	NM_016218	exon13	c.G1840C	p.E614Q	ATATCAGAGAATT	.	171.0	76.0	215.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	hg19	5	80040402	80040402	+	Silent	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MSH3	NM_002439	exon12	c.G1731A	p.K577K	GTTAAAGAAGTGG	.	52.0	20.0	53.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
SOX30	11063	hgsc.bcm.edu	hg19	5	157075894	157075894	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SOX30	NM_178424	exon2	c.T978A	p.D326E	GGGAGTATCTGGT	.	106.0	41.0	126.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
MAML1	9794	hgsc.bcm.edu	hg19	5	179193185	179193185	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MAML1	NM_014757	exon2	c.G1174T	p.E392X	GCCTCAGAGCTGT	.	104.0	28.0	153.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D9B	23061	hgsc.bcm.edu	hg19	5	179320371	179320371	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TBC1D9B	NM_198868	exon5	c.A674T	p.E225V	AAGAGCTCCTGGT	.	69.0	24.0	106.0	0.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D7	51256	hgsc.bcm.edu	hg19	6	13307966	13307966	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TBC1D7	NM_001143965	exon6	c.T531G	p.F177L	TTGTTCAAACGCT	.	85.0	26.0	116.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
AHI1	54806	hgsc.bcm.edu	hg19	6	135644423	135644423	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	AHI1	NM_017651	exon24	c.G3205T	p.E1069X	TTAGTTCATCTGA	.	27.0	13.0	45.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
REPS1	85021	hgsc.bcm.edu	hg19	6	139251190	139251190	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	REPS1	NM_001128617	exon9	c.C1181G	p.A394G	GCTTCAGCAGGAG	.	107.0	49.0	120.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
HOXA3	3200	hgsc.bcm.edu	hg19	7	27147884	27147884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	HOXA3	NM_030661	exon3	c.C982T	p.R328C	TGTAGCGCTTCTG	.	19.0	5.0	26.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48411809	48411809	+	Silent	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ABCA13	NM_152701	exon33	c.C10848A	p.A3616A	CCTGGCCTGGTTC	.	84.0	32.0	98.0	0.0	.	1192	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM139	135932	hgsc.bcm.edu	hg19	7	142983611	142983611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TMEM139	NM_001242773	exon4	c.T340C	p.Y114H	CCCCCCTACAGCA	.	148.0	46.0	207.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
CA8	767	hgsc.bcm.edu	hg19	8	61192348	61192348	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CA8	NM_004056	exon2	c.G192A	p.S64S	CAACAGCGAGGGG	.	103.0	66.0	104.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
ZC3H3	23144	hgsc.bcm.edu	hg19	8	144550696	144550696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	ZC3H3,caecum,carcinoma,0,1	ZC3H3	NM_015117	exon7	c.G1961A	p.R654H	AGGCTGCGCTGCA	.	28.0	2.0	17.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM245	23731	hgsc.bcm.edu	hg19	9	111853340	111853340	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_032012	exon5	c.C1012T	p.R338X	GCCTTCGTCTGCC	.	85.0	15.0	97.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
C9orf171	389799	hgsc.bcm.edu	hg19	9	135447853	135447853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	C9orf171	NM_207417	exon7	c.G919A	p.V307M	TGTGCCGTGCGCC	.	62.0	32.0	84.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
GTPBP4	23560	hgsc.bcm.edu	hg19	10	1061760	1061760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	GTPBP4	NM_012341	exon16	c.C1676A	p.A559D	ACTCTGCTCCCCC	.	166.0	55.0	198.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
KLF6	1316	hgsc.bcm.edu	hg19	10	3822362	3822362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	KLF6,colon,carcinoma,0,1	KLF6	NM_001300	exon3	c.G736A	p.E246K	TTAACTCATCACT	.	77.0	23.0	135.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
KIN	22944	hgsc.bcm.edu	hg19	10	7829859	7829859	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	KIN	NM_012311	exon1	c.C38G	p.A13G	CTGTTGGCGATAG	.	145.0	67.0	203.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
MGEA5	10724	hgsc.bcm.edu	hg19	10	103563517	103563517	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MGEA5	NM_001142434	exon7	c.T1011C	p.N337N	CACTCCATTCATG	.	116.0	9.0	148.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
NPS	594857	hgsc.bcm.edu	hg19	10	129347639	129347639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	NPS	NM_001030013	exon1	c.A7G	p.S3G	ATGATTAGGTAAA	.	37.0	4.0	48.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6662595	6662595	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	DCHS1	NM_003737	exon2	c.G250C	p.E84Q	TGCCCTCTTGGGC	.	49.0	20.0	55.0	0.0	.	277	.	.	.	none	.	.	PASS	Atlas-SNP
OR5F1	338674	hgsc.bcm.edu	hg19	11	55761615	55761615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	OR5F1	NM_003697	exon1	c.G487A	p.V163I	TGCTGACATGGCT	.	108.0	48.0	96.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
OR5F1	338674	hgsc.bcm.edu	hg19	11	55761636	55761636	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	OR5F1	NM_003697	exon1	c.T466G	p.F156V	CCATGAAGTTCAG	.	95.0	31.0	88.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
MYO7A	4647	hgsc.bcm.edu	hg19	11	76903188	76903188	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MYO7A	NM_000260	exon31	c.C4017T	p.N1339N	GCGCAACGCCCCC	.	77.0	35.0	106.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57573720	57573720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	LRP1	NM_002332	exon30	c.G5122A	p.V1708I	GGCCTTGTCGTCC	.	127.0	54.0	200.0	0.0	.	428	.	.	.	none	.	.	PASS	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112668608	112668608	+	Silent	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_001109662	exon40	c.C5817T	p.P1939P	GATGAAGGGACGC	.	15.0	5.0	23.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MTMR6	9107	hgsc.bcm.edu	hg19	13	25823587	25823587	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MTMR6	NM_004685	exon14	c.C1649G	p.T550S	TCCTTGGTGAGGA	.	58.0	24.0	79.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
IPO5	3843	hgsc.bcm.edu	hg19	13	98652854	98652854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	IPO5	NM_002271	exon13	c.G1117A	p.V373I	AAGCTCGTTCTGC	.	67.0	33.0	88.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
FARP1	10160	hgsc.bcm.edu	hg19	13	99037979	99037979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	FARP1	NM_005766	exon8	c.A670C	p.M224L	CTAGAGATGTATG	.	110.0	39.0	183.0	0.0	.	207	.	.	.	none	.	.	PASS	Atlas-SNP
LRP10	26020	hgsc.bcm.edu	hg19	14	23345117	23345117	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	LRP10	NM_014045	exon5	c.C960T	p.G320G	CTCTGGCCTGGGA	.	100.0	4.0	145.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33961646	33961646	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	RYR3	NM_001243996	exon37	c.T5711C	p.L1904P	ACCTTCTCCTTCA	.	53.0	21.0	82.0	0.0	.	760	.	.	.	none	.	.	PASS	Atlas-SNP
THBS1	7057	hgsc.bcm.edu	hg19	15	39885784	39885784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	THBS1	NM_003246	exon19	c.T3182C	p.L1061P	CGGGCCTTTCTGT	.	179.0	67.0	257.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
HMG20A	10363	hgsc.bcm.edu	hg19	15	77759508	77759508	+	Silent	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	HMG20A	NM_018200	exon5	c.C309A	p.P103P	TGCACCCAAATCC	.	75.0	28.0	116.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
MLST8	64223	hgsc.bcm.edu	hg19	16	2258565	2258565	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MLST8	NM_001199174	exon8	c.C813T	p.G271G	CCGCGGCTGGATG	.	198.0	45.0	276.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
PPP4C	5531	hgsc.bcm.edu	hg19	16	30094761	30094761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PPP4C	NM_002720	exon6	c.G350A	p.S117N	ATGAGAGTCGCCA	.	165.0	102.0	156.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
MARVELD3	91862	hgsc.bcm.edu	hg19	16	71663293	71663293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MARVELD3	NM_001017967	exon2	c.T491A	p.L164Q	GATATCTGCCCTC	.	121.0	5.0	118.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
ABR	29	hgsc.bcm.edu	hg19	17	916353	916353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ABR	NM_021962	exon17	c.A1843G	p.M615V	CGTTCATCTCAAT	.	129.0	39.0	129.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
CTNS	1497	hgsc.bcm.edu	hg19	17	3550808	3550808	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CTNS	NM_001031681	exon4	c.C132T	p.L44L	CAGCCTCACCCTG	.	94.0	13.0	68.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
GPR179	440435	hgsc.bcm.edu	hg19	17	36486249	36486249	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	GPR179	NM_001004334	exon11	c.T3203G	p.I1068S	GGGAAGATCTTGG	.	113.0	28.0	112.0	0.0	.	170	.	.	.	none	.	.	PASS	Atlas-SNP
IFNL1	282618	hgsc.bcm.edu	hg19	19	39787490	39787490	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_172140	exon2	c.T217G	p.F73V	CCTGTCTTCCCCG	.	55.0	23.0	106.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PRR19	284338	hgsc.bcm.edu	hg19	19	42814766	42814766	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PRR19	NM_199285	exon3	c.C945T	p.P315P	ATCACCCCTGTTG	.	218.0	83.0	300.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
RSPH6A	81492	hgsc.bcm.edu	hg19	19	46317875	46317875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	RSPH6A	NM_030785	exon1	c.C560G	p.A187G	ACCTGGGCACTGT	.	67.0	24.0	108.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM190	147744	hgsc.bcm.edu	hg19	19	55889354	55889354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	TMEM190,NS,carcinoma,0,1	TMEM190	NM_139172	exon5	c.G317A	p.R106H	CCAAGCGCCGGGA	.	47.0	2.0	60.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
PEG3	5178	hgsc.bcm.edu	hg19	19	57325186	57325186	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PEG3	NM_001146184	exon9	c.T4624C	p.C1542R	CTGAGCACTCCCC	.	114.0	35.0	186.0	0.0	.	414	.	.	.	none	.	.	PASS	Atlas-SNP
SAMHD1	25939	hgsc.bcm.edu	hg19	20	35532631	35532631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SAMHD1	NM_015474	exon13	c.A1432G	p.K478E	CCTCTTTTGGAAG	.	210.0	124.0	209.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
SCAF4	57466	hgsc.bcm.edu	hg19	21	33057763	33057763	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SCAF4	NM_020706	exon18	c.T2244C	p.T748T	TGGTGGAGTTATA	.	96.0	5.0	139.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
ND3	0	hgsc.bcm.edu	hg19	MT	10146	10146	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	ENST00000361227	exon1	c.T88G	p.Y30D	AACGGCTACATAG	.	8.0	7.0	0.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
GPT	2875	hgsc.bcm.edu	hg19	8	145732311	145732312	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	GPT	NM_005309	exon11	c.1419_1420insA	p.P473fs	.	.	109.0	36.0	109.0	0.0	.	31	.	0.330275	0	none	.	.	PASS	Atlas-INDEL
OR2M2	391194	hgsc.bcm.edu	hg19	1	248344277	248344277	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	OR2M2	NM_001004688	exon1	c.989delT	p.I330fs	.	.	166.0	49.0	201.0	0.0	.	149	.	0.295181	0	none	.	.	PASS	Atlas-INDEL
ITFG1	81533	hgsc.bcm.edu	hg19	16	47189669	47189669	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ITFG1	NM_030790	exon18	c.1801delC	p.R601fs	.	.	239.0	77.0	175.0	0.0	.	49	.	0.322176	0	none	.	.	PASS	Atlas-INDEL
AIM1	202	hgsc.bcm.edu	hg19	6	106968989	106968991	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	AIM1	NM_001624	exon2	c.2681_2683del	p.894_895del	.	.	148.0	55.0	196.0	0.0	.	161	.	0.371622	0	none	.	.	PASS	Atlas-INDEL
DMXL1	1657	hgsc.bcm.edu	hg19	5	118500212	118500213	+	Frame_Shift_Ins	INS	-	-	AGTCATTT	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	DMXL1	NM_005509	exon20	c.4713_4714insAGTCATTT	p.T1571fs	.	.	62.0	20.0	107.0	0.0	.	268	.	0.322581	0	none	.	.	PASS	Atlas-INDEL
FOXK2	3607	hgsc.bcm.edu	hg19	17	80543893	80543893	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	FOXK2	NM_004514	exon7	c.1392delG	p.Q464fs	.	.	70.0	22.0	86.0	0.0	.	46	.	0.314286	0	none	.	.	PASS	Atlas-INDEL