Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm BAI2 576 hgsc.bcm.edu hg19 1 32205741 32205741 + Missense_Mutation SNP T T G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . BAI2 NM_001703 exon13 c.A2028C p.E676D CTTGTTTTCCGCA . 148.0 50.0 214.0 0.0 . 128 . . . none . . PASS Atlas-SNP PMF1 11243 hgsc.bcm.edu hg19 1 156209392 156209392 + Missense_Mutation SNP A A C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PMF1 NM_001199654 exon5 c.A624C p.X208C TGAGTGAGGAGAC . 121.0 42.0 169.0 0.0 . 12 . . . none . . PASS Atlas-SNP OR2T3 343173 hgsc.bcm.edu hg19 1 248637175 248637175 + Missense_Mutation SNP A A C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . OR2T3 NM_001005495 exon1 c.A524C p.Q175P TTTGCCAGTCTAG . 430.0 119.0 467.0 1.0 . 79 . . . none . . PASS Atlas-SNP ERBB4 2066 hgsc.bcm.edu hg19 2 212248449 212248449 + Missense_Mutation SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . ERBB4 NM_005235 exon28 c.G3818A p.R1273Q CGGATCCGCCCAT . 197.0 111.0 178.0 1.0 . 480 . . . none . . PASS Atlas-SNP KIF1A 547 hgsc.bcm.edu hg19 2 241696843 241696843 + Missense_Mutation SNP C C A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . KIF1A NM_001244008 exon27 c.G2751T p.E917D CTCATCCTCCTCC . 263.0 15.0 138.0 0.0 . 152 . . . none . . PASS Atlas-SNP CCDC66 285331 hgsc.bcm.edu hg19 3 56627039 56627039 + Missense_Mutation SNP A A C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . CCDC66 NM_001141947 exon8 c.A978C p.Q326H GAAACAAGAACTG . 69.0 30.0 123.0 0.0 . 145 . . . none . . PASS Atlas-SNP TRIM42 287015 hgsc.bcm.edu hg19 3 140401754 140401754 + Silent SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . TRIM42 NM_152616 exon2 c.G792A p.K264K CCTCAAGGCCTTC . 248.0 102.0 277.0 0.0 . 143 . . . none . . PASS Atlas-SNP CDKL2 8999 hgsc.bcm.edu hg19 4 76532433 76532433 + Missense_Mutation SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . CDKL2 NM_003948 exon4 c.C476T p.T159I TAATCAGTATAAA . 125.0 41.0 201.0 0.0 . 58 . . . none . . PASS Atlas-SNP SYNPO2 171024 hgsc.bcm.edu hg19 4 119947961 119947961 + Missense_Mutation SNP A A C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . SYNPO2 NM_001128934 exon3 c.A437C p.Q146P AGAACCAAAGAAG . 162.0 48.0 172.0 0.0 . 353 . . . none . . PASS Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126240999 126240999 + Missense_Mutation SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . FAT4 NM_024582 exon1 c.G3433A p.D1145N CAGCCAGATTTTG . 96.0 30.0 114.0 0.0 . 1752 . . . none . . PASS Atlas-SNP ADCY2 108 hgsc.bcm.edu hg19 5 7816984 7816984 + Silent SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . ADCY2 NM_020546 exon23 c.C2889T p.P963P GGAGCCCGAGCGG . 181.0 17.0 234.0 0.0 . 337 . . . none . . PASS Atlas-SNP NUP155 9631 hgsc.bcm.edu hg19 5 37307409 37307409 + Missense_Mutation SNP A A G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . NUP155 NM_153485 exon25 c.T2893C p.F965L CTTGGAAGGCCTG . 165.0 67.0 138.0 0.0 . 116 . . . none . . PASS Atlas-SNP PAM 5066 hgsc.bcm.edu hg19 5 102237063 102237063 + Missense_Mutation SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PAM NM_138822 exon3 c.G214A p.D72N TAGTCCGATACAT . 63.0 4.0 98.0 0.0 . 180 . . . none . . PASS Atlas-SNP RNF14 9604 hgsc.bcm.edu hg19 5 141357939 141357939 + Missense_Mutation SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . RNF14 NM_001201365 exon5 c.G378T p.W126C TGCCTGGATGCAA . 248.0 70.0 306.0 0.0 . 30 . . . none . . PASS Atlas-SNP GEMIN5 25929 hgsc.bcm.edu hg19 5 154278113 154278113 + Missense_Mutation SNP C C T rs144363013 bycluster TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . GEMIN5 NM_015465 exon23 c.G3232A p.V1078I CTCCTACGATGGC . 244.0 85.0 301.0 0.0 . 120 . . . weak C|1.000;T|0.000 0.000 PASS Atlas-SNP TULP1 7287 hgsc.bcm.edu hg19 6 35471606 35471606 + Missense_Mutation SNP G G C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . TULP1 NM_003322 exon12 c.C1132G p.R378G TGAAGCGGTTCCC . 44.0 20.0 36.0 0.0 . 51 . . . none . . PASS Atlas-SNP CNKSR3 154043 hgsc.bcm.edu hg19 6 154732110 154732110 + Missense_Mutation SNP T T C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . CNKSR3 NM_173515 exon11 c.A1237G p.N413D GAATGTTGGTTTC . 163.0 60.0 180.0 0.0 . 56 . . . none . . PASS Atlas-SNP MET 4233 hgsc.bcm.edu hg19 7 116397543 116397543 + Missense_Mutation SNP A A C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . MET NM_000245 exon7 c.A1915C p.I639L TCCATAATTATTT . 86.0 40.0 92.0 0.0 . 412 . . . none . . PASS Atlas-SNP MFHAS1 9258 hgsc.bcm.edu hg19 8 8643536 8643536 + Missense_Mutation SNP T T C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . MFHAS1 NM_004225 exon3 c.A3155G p.Q1052R CGTCACTGGTTTC . 135.0 13.0 165.0 0.0 . 58 . . . none . . PASS Atlas-SNP C9orf89 84270 hgsc.bcm.edu hg19 9 95874554 95874554 + Missense_Mutation SNP T T G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . C9orf89 NM_032310 exon5 c.T419G p.L140R TGCTCCTGTACTG . 57.0 23.0 70.0 0.0 . 12 . . . none . . PASS Atlas-SNP C9orf89 84270 hgsc.bcm.edu hg19 9 95874555 95874555 + Silent SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . C9orf89 NM_032310 exon5 c.G420T p.L140L GCTCCTGTACTGC . 56.0 23.0 70.0 0.0 . 12 . . . none . . PASS Atlas-SNP CCDC3 83643 hgsc.bcm.edu hg19 10 13043327 13043327 + Missense_Mutation SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . CCDC3 NM_031455 exon1 c.C244A p.L82M CGCACAGCATCTC . 70.0 27.0 70.0 0.0 . 27 . . . none . . PASS Atlas-SNP C10orf76 79591 hgsc.bcm.edu hg19 10 103789497 103789497 + Silent SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . C10orf76 NM_024541 exon5 c.G312A p.L104L TGCGCACAGGGTC . 46.0 10.0 48.0 0.0 . 48 . . . none . . PASS Atlas-SNP PSD 5662 hgsc.bcm.edu hg19 10 104173630 104173630 + Missense_Mutation SNP C C A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PSD NM_001270965 exon6 c.G1449T p.E483D CTCCTCCTCCCCT . 147.0 50.0 209.0 0.0 . 164 . . . none . . PASS Atlas-SNP INPPL1 3636 hgsc.bcm.edu hg19 11 71944164 71944164 + Missense_Mutation SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . INPPL1 NM_001567 exon17 c.G1997T p.G666V AGCGGGGTTCCCG . 158.0 66.0 219.0 0.0 . 120 . . . none . . PASS Atlas-SNP MMP27 64066 hgsc.bcm.edu hg19 11 102563689 102563689 + Missense_Mutation SNP T T G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . MMP27 NM_022122 exon9 c.A1277C p.D426A GCAGCATCAACAC . 157.0 48.0 178.0 0.0 . 84 . . . none . . PASS Atlas-SNP PAFAH1B2 5049 hgsc.bcm.edu hg19 11 117038364 117038364 + Missense_Mutation SNP C C G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PAFAH1B2 NM_002572 exon6 c.C639G p.I213M ACTGATCATGCAG . 330.0 137.0 340.0 0.0 . 19 . . . none . . PASS Atlas-SNP RECQL 5965 hgsc.bcm.edu hg19 12 21623145 21623145 + Missense_Mutation SNP T T G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . RECQL NM_032941 exon16 c.A1933C p.K645Q CGATTTTTCTTTT . 427.0 263.0 243.0 0.0 . 45 . . . none . . PASS Atlas-SNP LRIG3 121227 hgsc.bcm.edu hg19 12 59308047 59308047 + Missense_Mutation SNP C C T rs373824765 TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . LRIG3 NM_153377 exon2 c.G307A p.V103M CTCACACTTCTCG . 88.0 13.0 61.0 0.0 . 120 . . . weak . . PASS Atlas-SNP CLMN 79789 hgsc.bcm.edu hg19 14 95670380 95670380 + Missense_Mutation SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . CLMN NM_024734 exon9 c.C1306T p.P436S AGAAAGGATCCTT . 113.0 68.0 221.0 0.0 . 103 . . . none . . PASS Atlas-SNP CSPG4 1464 hgsc.bcm.edu hg19 15 75968209 75968209 + Missense_Mutation SNP G G C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . CSPG4 NM_001897 exon10 c.C6651G p.F2217L CTCAAGGAAGCTC . 56.0 21.0 73.0 0.0 . 175 . . . none . . PASS Atlas-SNP RHCG 51458 hgsc.bcm.edu hg19 15 90030138 90030138 + Missense_Mutation SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . RHCG NM_016321 exon2 c.C263T p.A88V CCCACGGCGCTGA . 357.0 159.0 379.0 0.0 . 49 . . . none . . PASS Atlas-SNP STUB1 10273 hgsc.bcm.edu hg19 16 732019 732019 + Splice_Site SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 STUB1,colon,carcinoma,0,1 STUB1 NM_005861 exon5 c.613-1G>T . TTCACAGGACAAG . 276.0 156.0 220.0 0.0 . 26 . . . none . . PASS Atlas-SNP GLG1 2734 hgsc.bcm.edu hg19 16 74505165 74505165 + Missense_Mutation SNP A A C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . GLG1 NM_001145667 exon15 c.T2135G p.I712R GAGTCTATCTGGT . 227.0 60.0 191.0 0.0 . 106 . . . none . . PASS Atlas-SNP C16orf46 123775 hgsc.bcm.edu hg19 16 81094972 81094972 + Nonsense_Mutation SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . C16orf46 NM_001100873 exon3 c.C982T p.Q328X GTTTCTGCAGAAG . 316.0 83.0 250.0 0.0 . 57 . . . none . . PASS Atlas-SNP TRPV1 7442 hgsc.bcm.edu hg19 17 3480482 3480482 + Missense_Mutation SNP A A G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . TRPV1 NM_018727 exon12 c.T1718C p.I573T CTCAGGATCATCT . 257.0 125.0 213.0 0.0 . 99 . . . none . . PASS Atlas-SNP NCOR1 9611 hgsc.bcm.edu hg19 17 15968952 15968952 + Missense_Mutation SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . NCOR1 NM_001190440 exon32 c.C4846A p.Q1616K GATACTGACTTGG . 279.0 72.0 222.0 0.0 . 240 . . . none . . PASS Atlas-SNP KCNJ18 100134444 hgsc.bcm.edu hg19 17 21318895 21318895 + Missense_Mutation SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 KCNJ12,NS,carcinoma,0,1 . NM_001194958 exon3 c.C241T p.R81W CGCTGGCGGTACA . 373.0 50.0 300.0 2.0 . . . . . none . . PASS Atlas-SNP PPM1E 22843 hgsc.bcm.edu hg19 17 56833457 56833457 + Silent SNP G G C rs74256772 TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 PPM1E,colon,carcinoma,0,1 PPM1E NM_014906 exon1 c.G99C p.P33P GGAGCCGGAACCC . 83.0 5.0 65.0 0.0 . 97 . . . weak . . PASS Atlas-SNP DNAH17 8632 hgsc.bcm.edu hg19 17 76449535 76449535 + Silent SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . DNAH17 NM_173628 exon65 c.C10419A p.V3473V CTCGATGACATCC . 238.0 118.0 203.0 0.0 . 347 . . . none . . PASS Atlas-SNP PTPRM 5797 hgsc.bcm.edu hg19 18 8314790 8314790 + Nonsense_Mutation SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PTPRM NM_001105244 exon21 c.C2854T p.R952X CATTCCCGAGTGA . 72.0 4.0 100.0 0.0 . 185 . . . none . . PASS Atlas-SNP ZNF844 284391 hgsc.bcm.edu hg19 19 12187443 12187443 + Missense_Mutation SNP C C G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 ZNF844,bladder,carcinoma,0,11 ZNF844 NM_001136501 exon4 c.C1508G p.P503R GAAACCCTATGAG . 93.0 4.0 88.0 1.0 . 69 . . . none . . PASS Atlas-SNP MZF1 7593 hgsc.bcm.edu hg19 19 59082699 59082699 + Missense_Mutation SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . MZF1 NM_198055 exon2 c.G58A p.V20I CCATGACAGGCCC . 117.0 39.0 127.0 0.0 . 37 . . . none . . PASS Atlas-SNP URB1 9875 hgsc.bcm.edu hg19 21 33727865 33727865 + Missense_Mutation SNP C C A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . URB1 NM_014825 exon16 c.G1999T p.D667Y CCGTGTCCCGCAG . 43.0 31.0 77.0 0.0 . 176 . . . none . . PASS Atlas-SNP TAB1 10454 hgsc.bcm.edu hg19 22 39814795 39814795 + Silent SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . TAB1 NM_153497 exon6 c.G609A p.L203L ACAGCTGAACGTG . 179.0 68.0 206.0 0.0 . 36 . . . none . . PASS Atlas-SNP ND1 10625 hgsc.bcm.edu hg19 MT 3698 3698 + Missense_Mutation SNP G G A rs199476122 TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . . ENST00000361390 exon1 c.G392A p.G131D TGATCGGCGCACT . 15.0 11.0 16.0 0.0 . . . . . weak . . PASS Atlas-SNP COX2 5743 hgsc.bcm.edu hg19 MT 7741 7741 + Silent SNP T T C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . . ENST00000361739 exon1 c.T156C p.N52N AACTAATACTAAC . 26.0 21.0 24.0 0.0 . . . . . none . . PASS Atlas-SNP MAP4K1 11184 hgsc.bcm.edu hg19 19 39101749 39101755 + Frame_Shift_Del DEL ATGAAGT ATGAAGT - novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 ATGAAGT ATGAAGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . MAP4K1 NM_007181 exon11 c.747_753del p.249_251del . . 141.0 29.0 190.0 0.0 . 165 . 0.205674 0 none . . PASS Atlas-Indel,Pindel VSTM4 196740 hgsc.bcm.edu hg19 10 50311832 50311835 + Frame_Shift_Del DEL GGGC GGGC - novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 GGGC GGGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . VSTM4 NM_144984 exon3 c.529_532del p.177_178del . . 130.0 34.0 201.0 0.0 . 83 . 0.261538 0 none . . PASS Atlas-Indel,Pindel PRKCI 5584 hgsc.bcm.edu hg19 3 170013708 170013708 + Frame_Shift_Del DEL A A - novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PRKCI NM_002740 exon15 c.1426delG p.E476fs . . 85.0 42.0 118.0 0.0 . 82 . 0.494118 0 none . . PASS Atlas-Indel,Pindel SYNPO2 171024 hgsc.bcm.edu hg19 4 119947965 119947967 + In_Frame_Del DEL AAG AAG - novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 AAG AAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . SYNPO2 NM_001128933 exon3 c.440_442del p.147_148del . . 165.0 32.0 171.0 0.0 . 353 . 0.194 . none . . PASS Pindel