Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
FAM46B	115572	hgsc.bcm.edu	hg19	1	27332779	27332779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	FAM46B	NM_052943	exon2	c.G934A	p.D312N	GAAAGTCGATGAA	.	91.0	4.0	34.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM125	128218	hgsc.bcm.edu	hg19	1	43739036	43739036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TMEM125	NM_144626	exon4	c.A643G	p.I215V	TCCAGCATTGCCA	.	150.0	80.0	205.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
C1orf185	284546	hgsc.bcm.edu	hg19	1	51578193	51578193	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	C1orf185	NM_001136508	exon2	c.G74C	p.G25A	GAATTGGTTTCTT	.	32.0	16.0	26.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
RPTN	126638	hgsc.bcm.edu	hg19	1	152127305	152127305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	RPTN	NM_001122965	exon3	c.G2270A	p.R757Q	CTGTCTCGTCTCT	.	399.0	158.0	367.0	1.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
NUP210L	91181	hgsc.bcm.edu	hg19	1	154108401	154108401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	NUP210L	NM_001159484	exon7	c.A898G	p.R300G	CAACTCTATGGTC	.	94.0	29.0	90.0	0.0	.	181	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM9	252839	hgsc.bcm.edu	hg19	1	201123024	201123024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TMEM9	NM_016456	exon2	c.G28A	p.V10I	ACCCGACCACAGC	.	251.0	89.0	275.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
GPN1	11321	hgsc.bcm.edu	hg19	2	27858007	27858007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	GPN1	NM_007266	exon7	c.G472A	p.A158T	CTTTAGGCATCCT	.	189.0	73.0	209.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73836707	73836707	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ALMS1	NM_015120	exon23	c.C12472T	p.Q4158X	ACCAATCAACTTC	.	53.0	15.0	54.0	0.0	.	384	.	.	.	none	.	.	PASS	Atlas-SNP
ACVR2A	92	hgsc.bcm.edu	hg19	2	148676153	148676153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ACVR2A	NM_001616	exon7	c.A954G	p.I318M	TGCCATATCTCAC	.	56.0	22.0	28.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
SH3BP4	23677	hgsc.bcm.edu	hg19	2	235949726	235949726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SH3BP4	NM_014521	exon4	c.C313G	p.P105A	TACATCCCCTCCT	.	320.0	127.0	321.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4859771	4859771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ITPR1	NM_001168272	exon59	c.G7828A	p.E2610K	GGCTTGGAAAGAG	.	126.0	45.0	101.0	0.0	.	659	.	.	.	none	.	.	PASS	Atlas-SNP
THUMPD3	25917	hgsc.bcm.edu	hg19	3	9406849	9406849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	THUMPD3	NM_001114092	exon2	c.G97A	p.E33K	GGAAGTGAATCTG	.	128.0	51.0	133.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	hg19	3	151155196	151155196	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IGSF10	NM_178822	exon6	c.A7153C	p.S2385R	GATAACTTTGTGG	.	77.0	41.0	79.0	0.0	.	279	.	.	.	none	.	.	PASS	Atlas-SNP
ENPEP	2028	hgsc.bcm.edu	hg19	4	111397929	111397929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ENPEP	NM_001977	exon1	c.G359A	p.S120N	CCGTGAGCATCTC	.	143.0	38.0	132.0	0.0	.	149	.	.	.	none	.	.	PASS	Atlas-SNP
CCT5	22948	hgsc.bcm.edu	hg19	5	10263419	10263419	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	CCT5	NM_012073	exon10	c.G1491A	p.G497G	CAAGGGGACAAAT	.	111.0	50.0	97.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF366	167465	hgsc.bcm.edu	hg19	5	71739709	71739709	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ZNF366	NM_152625	exon5	c.G2109A	p.R703R	AAAAGCCCTGAGA	.	42.0	13.0	36.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
SLC12A2	6558	hgsc.bcm.edu	hg19	5	127477532	127477532	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SLC12A2	NM_001046	exon10	c.T1632A	p.V544V	TTGTGTTGTTCGA	.	74.0	25.0	100.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
SLC26A2	1836	hgsc.bcm.edu	hg19	5	149361289	149361289	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SLC26A2	NM_000112	exon3	c.T2133C	p.S711S	CTATAGTGTGTAT	.	41.0	17.0	42.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
DNPH1	10591	hgsc.bcm.edu	hg19	6	43193768	43193768	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_199184	exon3	c.G379T	p.E127X	GGTGCTCACCGCG	.	72.0	25.0	76.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	hg19	6	160467594	160467594	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IGF2R	NM_000876	exon15	c.G1968C	p.K656N	AAAGAAGTATGAC	.	32.0	9.0	22.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
ISPD	729920	hgsc.bcm.edu	hg19	7	16255771	16255771	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ISPD	NM_001101426	exon9	c.C1171G	p.L391V	GCATTAGGTTTTC	.	50.0	28.0	23.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
HIP1	3092	hgsc.bcm.edu	hg19	7	75183809	75183809	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	HIP1	NM_005338	exon20	c.G1980A	p.T660T	TGTGACCGTGGAG	.	105.0	63.0	105.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
PAXIP1	22976	hgsc.bcm.edu	hg19	7	154767474	154767474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	PAXIP1	NM_007349	exon6	c.C1006T	p.R336W	GTGTCCGTACAGC	.	202.0	86.0	101.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
SGK223	0	hgsc.bcm.edu	hg19	8	8235300	8235300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_001080826	exon2	c.T619C	p.F207L	GGCGGAAGCTCTC	.	94.0	43.0	111.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52359698	52359698	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	PXDNL	NM_144651	exon12	c.A1391T	p.Q464L	GTATGCTGGCCTT	.	108.0	44.0	100.0	0.0	.	414	.	.	.	none	.	.	PASS	Atlas-SNP
RB1CC1	9821	hgsc.bcm.edu	hg19	8	53555097	53555097	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	RB1CC1	NM_001083617	exon18	c.A4151C	p.K1384T	TCAAGCTTTTTCT	.	93.0	39.0	85.0	0.0	.	163	.	.	.	none	.	.	PASS	Atlas-SNP
UTP23	84294	hgsc.bcm.edu	hg19	8	117782585	117782585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	UTP23	NM_032334	exon2	c.C343T	p.H115Y	CCTCATCATTATT	.	87.0	30.0	58.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
TONSL	4796	hgsc.bcm.edu	hg19	8	145668588	145668588	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TONSL	NM_013432	exon4	c.G381C	p.R127S	AGCATCCCTCGAC	.	160.0	50.0	169.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC180	0	hgsc.bcm.edu	hg19	9	100128909	100128909	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	KIAA1529,colon,carcinoma,0,1	.	NM_020893	exon31	c.C4248T	p.C1416C	CCAGTGCGCCGAG	.	336.0	119.0	300.0	2.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
IDI2	91734	hgsc.bcm.edu	hg19	10	1066741	1066741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	IDI2,caecum,carcinoma,0,1	IDI2	NM_033261	exon4	c.G332A	p.R111H	TGCAGACGCCTCT	.	90.0	4.0	92.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
MYPN	84665	hgsc.bcm.edu	hg19	10	69959137	69959137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MYPN	NM_032578	exon17	c.C3298T	p.P1100S	GGTTTACCGCCCC	.	129.0	47.0	124.0	0.0	.	189	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM8	81603	hgsc.bcm.edu	hg19	10	104416093	104416093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TRIM8	NM_030912	exon5	c.C999A	p.F333L	GCTCTTCCTGAAC	.	200.0	86.0	170.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
GPR83	10888	hgsc.bcm.edu	hg19	11	94113422	94113422	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	GPR83	NM_016540	exon4	c.A1165T	p.N389Y	CATCATTCTTCTC	.	175.0	76.0	152.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
PIWIL4	143689	hgsc.bcm.edu	hg19	11	94340737	94340737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	PIWIL4	NM_152431	exon14	c.A1771G	p.I591V	ATGAGTATCGCCA	.	95.0	37.0	74.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
CD9	928	hgsc.bcm.edu	hg19	12	6309731	6309731	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	CD9	NM_001769	exon1	c.G66A	p.W22X	CTTCTGGGTGAGT	.	97.0	4.0	58.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
XPOT	11260	hgsc.bcm.edu	hg19	12	64827226	64827226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	XPOT	NM_007235	exon19	c.C2295A	p.F765L	GATGTTCATGCCC	.	126.0	74.0	122.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
SLC35E3	55508	hgsc.bcm.edu	hg19	12	69158530	69158530	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SLC35E3	NM_018656	exon5	c.G802T	p.G268X	TTCGGAGGATATG	.	94.0	4.0	72.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
UHRF1BP1L	23074	hgsc.bcm.edu	hg19	12	100453199	100453199	+	Missense_Mutation	SNP	C	C	G	rs374748413	alternate_allele	TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	UHRF1BP1L,colon,carcinoma,0,1	UHRF1BP1L	NM_015054	exon14	c.G1856C	p.R619P	GAATGTCGACAGT	.	103.0	22.0	83.0	0.0	.	144	.	.	.	alt	.	.	PASS	Atlas-SNP
SCYL2	55681	hgsc.bcm.edu	hg19	12	100707272	100707272	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SCYL2	NM_017988	exon7	c.A925T	p.N309Y	CTGTTAAATGTAA	.	102.0	27.0	54.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
IFT81	28981	hgsc.bcm.edu	hg19	12	110565896	110565896	+	Nonsense_Mutation	SNP	C	C	T	rs372027811		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IFT81	NM_014055	exon3	c.C190T	p.R64X	GCCAAACGAATGT	.	119.0	36.0	71.0	0.0	.	86	.	.	.	weak	.	.	PASS	Atlas-SNP
OLFM4	10562	hgsc.bcm.edu	hg19	13	53624827	53624827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	OLFM4	NM_006418	exon5	c.C1454A	p.P485H	ATAACCCTTTTGA	.	72.0	43.0	63.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
C14orf105	55195	hgsc.bcm.edu	hg19	14	57960296	57960296	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	C14orf105	NM_018168	exon1	c.A138T	p.S46S	TGCCAGTGAATAT	.	75.0	35.0	67.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
PAPLN	89932	hgsc.bcm.edu	hg19	14	73712877	73712877	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	PAPLN	NM_173462	exon5	c.T328G	p.Y110D	CCCTACTACAGCG	.	60.0	20.0	28.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
ELMSAN1	91748	hgsc.bcm.edu	hg19	14	74186137	74186137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_194278	exon12	c.C3005T	p.S1002L	TTCTCCGAGGCCT	.	115.0	5.0	123.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
NUSAP1	51203	hgsc.bcm.edu	hg19	15	41669495	41669495	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	NUSAP1	NM_016359	exon10	c.C1225T	p.Q409X	CATCTCCAGACAA	.	56.0	20.0	40.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
SHF	90525	hgsc.bcm.edu	hg19	15	45491143	45491143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SHF	NM_138356	exon2	c.C130A	p.H44N	AGGAATGGGGCTG	.	137.0	68.0	123.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
C15orf39	56905	hgsc.bcm.edu	hg19	15	75499667	75499667	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	C15orf39	NM_015492	exon2	c.C1278T	p.C426C	GCCCTGCTCAGAG	.	150.0	64.0	119.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	hg19	16	3901001	3901001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	CREBBP	NM_001079846	exon2	c.C95T	p.S32L	AACAATGATCCAA	.	78.0	22.0	49.0	0.0	.	546	.	.	.	none	.	.	PASS	Atlas-SNP
UBN1	29855	hgsc.bcm.edu	hg19	16	4908004	4908004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	UBN1	NM_001079514	exon3	c.C263T	p.S88L	ATCTGTCAGATCC	.	32.0	9.0	12.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	21051260	21051260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	DNAH3	NM_017539	exon33	c.G4644T	p.L1548F	CCGGAACAAGGCC	.	236.0	59.0	177.0	0.0	.	1142	.	.	.	none	.	.	PASS	Atlas-SNP
MBTPS1	8720	hgsc.bcm.edu	hg19	16	84094306	84094306	+	Silent	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MBTPS1	NM_003791	exon20	c.C2685G	p.V895V	TGGAGTGACTGAG	.	126.0	55.0	110.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
ZCCHC14	23174	hgsc.bcm.edu	hg19	16	87445209	87445209	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ZCCHC14	NM_015144	exon12	c.A2707T	p.S903C	TCCCGCTCTTTTT	.	165.0	56.0	136.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
FXR2	9513	hgsc.bcm.edu	hg19	17	7497319	7497319	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	FXR2	NM_004860	exon11	c.A1024C	p.M342L	GAACCATTCCCTA	.	63.0	18.0	46.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	hg19	17	10366950	10366950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MYH4	NM_017533	exon8	c.A659C	p.E220A	TGATCTTCAAGGG	.	72.0	55.0	58.0	0.0	.	349	.	.	.	none	.	.	PASS	Atlas-SNP
STAC2	342667	hgsc.bcm.edu	hg19	17	37373422	37373422	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	STAC2	NM_198993	exon3	c.C402T	p.N134N	TTTGGAGTTTCCT	.	115.0	60.0	83.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	hg19	17	56833454	56833454	+	Silent	SNP	G	G	A	rs77856248		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	PPM1E,colon,carcinoma,0,1	PPM1E	NM_014906	exon1	c.G96A	p.E32E	GCCGGAGCCGGAA	.	79.0	11.0	31.0	0.0	.	97	.	.	.	weak	.	.	PASS	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	hg19	17	56833457	56833457	+	Silent	SNP	G	G	C	rs74256772		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	PPM1E,colon,carcinoma,0,1	PPM1E	NM_014906	exon1	c.G99C	p.P33P	GGAGCCGGAACCC	.	72.0	12.0	28.0	1.0	.	97	.	.	.	weak	.	.	PASS	Atlas-SNP
NEDD4L	23327	hgsc.bcm.edu	hg19	18	56033337	56033337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	NEDD4L	NM_001144967	exon21	c.G1940C	p.R647T	AAGCTAGACTGTG	.	132.0	9.0	93.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
LPPR3	0	hgsc.bcm.edu	hg19	19	815207	815207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_001270366	exon4	c.C382T	p.R128W	TACGCCGCAGGAA	.	4.0	4.0	0.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF57	126295	hgsc.bcm.edu	hg19	19	2915555	2915555	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ZNF57	NM_173480	exon2	c.C39T	p.F13F	GGACTTCACCCTG	.	170.0	76.0	174.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
C19orf71	100128569	hgsc.bcm.edu	hg19	19	3543943	3543943	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	C19orf71	NM_001135580	exon4	c.C565T	p.L189L	TGGGTCCTGGAAC	.	348.0	126.0	253.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
ZFR2	23217	hgsc.bcm.edu	hg19	19	3808936	3808936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ZFR2	NM_015174	exon17	c.C2479T	p.P827S	CCAGGGGCCCAGC	.	33.0	15.0	16.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
IL27RA	9466	hgsc.bcm.edu	hg19	19	14150421	14150421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IL27RA	NM_004843	exon3	c.G320A	p.G107D	TCTGGGGCACTAA	.	190.0	61.0	170.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
MYO9B	4650	hgsc.bcm.edu	hg19	19	17322846	17322846	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MYO9B	NM_004145	exon40	c.G6201A	p.T2067T	GCCCACGGCCAAC	.	59.0	36.0	32.0	0.0	.	264	.	.	.	none	.	.	PASS	Atlas-SNP
MAP3K10	4294	hgsc.bcm.edu	hg19	19	40698281	40698281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MAP3K10	NM_002446	exon1	c.G343T	p.A115S	TATCGGGCCCTGT	.	28.0	4.0	9.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF221	7638	hgsc.bcm.edu	hg19	19	44471195	44471195	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	ZNF221,colon,carcinoma,0,1	ZNF221	NM_013359	exon6	c.G1541C	p.R514T	GAAAGAGATTTAC	.	51.0	15.0	51.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
SEPT5	5413	hgsc.bcm.edu	hg19	22	19709430	19709430	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	SEPT5_ENST00000455784,caecum,carcinoma,0,1	SEPT5	NM_001009939	exon9	c.C916T	p.R306X	GACGTGCGACGTG	.	119.0	43.0	67.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
MTMR3	8897	hgsc.bcm.edu	hg19	22	30416249	30416249	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MTMR3	NM_153050	exon17	c.C2601T	p.C867C	ATCTTGCCTTGTA	.	145.0	60.0	139.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
POLA1	5422	hgsc.bcm.edu	hg19	X	24750526	24750526	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	POLA1	NM_016937	exon16	c.T1708A	p.L570M	TTTGCATTGGATA	.	26.0	23.0	43.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
GATA1	2623	hgsc.bcm.edu	hg19	X	48652221	48652221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	GATA1	NM_002049	exon6	c.C892T	p.R298W	ACCATGCGGAAGG	.	75.0	4.0	73.0	0.0	.	342	.	.	.	none	.	.	PASS	Atlas-SNP
ARID1A	8289	hgsc.bcm.edu	hg19	1	27106015	27106015	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ARID1A	NM_006015	exon20	c.5625delA	p.P1875fs	.	.	122.0	49.0	118.0	0.0	.	842	.	0.401639	0	none	.	.	PASS	Atlas-Indel,Pindel
COL7A1	1294	hgsc.bcm.edu	hg19	3	48610131	48610131	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	COL7A1	NM_000094	exon87	c.6874delC	p.P2292fs	.	.	114.0	31.0	136.0	0.0	.	320	.	0.272	.	none	.	.	PASS	Pindel
USF2	7392	hgsc.bcm.edu	hg19	19	35761401	35761402	+	In_Frame_Ins	INS	-	-	TCAGCGGGGAGGCACGATTTGCCT	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	USF2	NM_003367	exon5	c.481_482insTCAGCGGGGAGGCACGATTTGCCT	p.V161delinsVSGEARFAF	.	.	225.0	32.0	287.0	0.0	.	26	.	0.142	.	none	.	.	PASS	Pindel
IL17RD	54756	hgsc.bcm.edu	hg19	3	57144293	57144293	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IL17RD	NM_017563	exon4	c.358delT	p.S120fs	.	.	90.0	27.0	123.0	0.0	.	93	.	0.300	.	none	.	.	PASS	Pindel