Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm DDI2 84301 hgsc.bcm.edu hg19 1 15956850 15956850 + Missense_Mutation SNP C C A novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . DDI2 NM_032341 exon3 c.C299A p.A100D GTATAGCTGTGCC . 112.0 24.0 131.0 0.0 . 38 . . . none . . PASS Atlas-SNP ST3GAL3 6487 hgsc.bcm.edu hg19 1 44290408 44290408 + Missense_Mutation SNP C C A novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . ST3GAL3 NM_174963 exon5 c.C260A p.P87Q GCTCACCGAGGAC . 141.0 8.0 179.0 0.0 . 56 . . . none . . PASS Atlas-SNP FAM151A 338094 hgsc.bcm.edu hg19 1 55077353 55077353 + Missense_Mutation SNP C C A novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 FAM151A,right_upper_lobe,carcinoma,-1,1 FAM151A NM_176782 exon6 c.G866T p.R289L TTATCCCGGACGT . 134.0 6.0 172.0 0.0 . 58 . . . none . . PASS Atlas-SNP CCDC88A 55704 hgsc.bcm.edu hg19 2 55523606 55523606 + Missense_Mutation SNP T T C novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . CCDC88A NM_001254943 exon30 c.A4876G p.S1626G GCAGGCTAAATTC . 68.0 19.0 104.0 0.0 . 336 . . . none . . PASS Atlas-SNP FAM161A 84140 hgsc.bcm.edu hg19 2 62067675 62067675 + Missense_Mutation SNP A A T novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . FAM161A NM_032180 exon3 c.T464A p.M155K GATGTCATTAATG . 67.0 8.0 90.0 0.0 . 200 . . . none . . PASS Atlas-SNP MAT2A 4144 hgsc.bcm.edu hg19 2 85770091 85770091 + Missense_Mutation SNP A A T novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . MAT2A NM_005911 exon8 c.A1019T p.K340M CTCAGAAGAGTGA . 143.0 28.0 172.0 0.0 . 23 . . . none . . PASS Atlas-SNP PHOSPHO2 493911 hgsc.bcm.edu hg19 2 170557930 170557930 + Missense_Mutation SNP A A G novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . PHOSPHO2 NM_001199286 exon4 c.A449G p.N150S CAAAGAATCTTTG . 75.0 13.0 90.0 0.0 . 27 . . . none . . PASS Atlas-SNP OR6B2 389090 hgsc.bcm.edu hg19 2 240969643 240969643 + Missense_Mutation SNP G G C novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . OR6B2 NM_001005853 exon1 c.C204G p.F68L CTCCAGGAAAGAC . 168.0 20.0 242.0 0.0 . 30 . . . none . . PASS Atlas-SNP ERC2 26059 hgsc.bcm.edu hg19 3 56026194 56026194 + Missense_Mutation SNP G G T novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 ERC2_ENST00000288221,caecum,carcinoma,0,2 ERC2 NM_015576 exon11 c.C2146A p.R716S CGTCGCGGTAGTA . 317.0 14.0 308.0 1.0 . 221 . . . none . . PASS Atlas-SNP THAP9 79725 hgsc.bcm.edu hg19 4 83839493 83839493 + Missense_Mutation SNP G G A novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . THAP9 NM_024672 exon5 c.G2128A p.D710N CTGTCAGATCATA . 107.0 26.0 101.0 0.0 . 65 . . . none . . PASS Atlas-SNP NR3C2 4306 hgsc.bcm.edu hg19 4 149075914 149075914 + Missense_Mutation SNP G G C novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 NR3C2,colon,carcinoma,0,1 NR3C2 NM_000901 exon5 c.C2153G p.S718W TTGACCGAGGGTT . 177.0 30.0 289.0 0.0 . 94 . . . none . . PASS Atlas-SNP SREK1 140890 hgsc.bcm.edu hg19 5 65466769 65466769 + Missense_Mutation SNP C C T novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . SREK1 NM_001077199 exon9 c.C1478T p.S493F GTAGTTCCAGCAG . 69.0 17.0 63.0 0.0 . 58 . . . none . . PASS Atlas-SNP STK32A 202374 hgsc.bcm.edu hg19 5 146752790 146752790 + Missense_Mutation SNP C C A novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . STK32A NM_001112724 exon10 c.C836A p.P279Q ACTTCCCGTATAT . 242.0 10.0 268.0 0.0 . 54 . . . none . . PASS Atlas-SNP SCUBE3 222663 hgsc.bcm.edu hg19 6 35213840 35213840 + Missense_Mutation SNP C C A rs142335824 bycluster;by1000genomes;alternate_allele TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . SCUBE3 NM_152753 exon20 c.C2719A p.R907S AGCGCCCGTGGCT . 186.0 8.0 278.0 0.0 . 99 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP SGK1 6446 hgsc.bcm.edu hg19 6 134495704 134495704 + Missense_Mutation SNP T T C novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . SGK1 NM_001143676 exon4 c.A382G p.M128V GACCCATCCTCCT . 51.0 7.0 70.0 0.0 . 387 . . . none . . PASS Atlas-SNP MLL5 55904 hgsc.bcm.edu hg19 7 104748161 104748161 + Missense_Mutation SNP A A T novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . MLL5 NM_018682 exon21 c.A3257T p.D1086V TGAGGGACCTGAC . 65.0 22.0 54.0 0.0 . 173 . . . none . . PASS Atlas-SNP TTC26 79989 hgsc.bcm.edu hg19 7 138822639 138822639 + Missense_Mutation SNP T T C novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . TTC26 NM_001144920 exon3 c.T188C p.I63T TGTGGATTGGATA . 110.0 7.0 82.0 0.0 . 50 . . . none . . PASS Atlas-SNP AGPAT6 137964 hgsc.bcm.edu hg19 8 41467379 41467379 + Silent SNP C C T novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 AGPAT6,caecum,carcinoma,0,1 AGPAT6 NM_178819 exon4 c.C441T p.S147S GCTGAGCAGAACC . 124.0 30.0 150.0 0.0 . 32 . . . none . . PASS Atlas-SNP CDC37L1 55664 hgsc.bcm.edu hg19 9 4706079 4706079 + Silent SNP A A G rs200977934 alternate_allele TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . CDC37L1 NM_017913 exon7 c.A981G p.E327E TAAAGAAGATGAT . 46.0 6.0 50.0 0.0 . 19 . . . alt . . PASS Atlas-SNP CACFD1 11094 hgsc.bcm.edu hg19 9 136333115 136333115 + Silent SNP G G A rs150411088 TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . CACFD1 NM_017586 exon4 c.G393A p.T131T TGCTACGGGGGTG . 59.0 16.0 68.0 0.0 . 1 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP ARHGAP19 84986 hgsc.bcm.edu hg19 10 98995038 98995038 + Missense_Mutation SNP C C A novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . ARHGAP19 NM_032900 exon9 c.G1220T p.R407L GGTTCTCGCCCTG . 198.0 8.0 217.0 0.0 . 72 . . . none . . PASS Atlas-SNP NDUFS3 4722 hgsc.bcm.edu hg19 11 47604000 47604000 + Missense_Mutation SNP C C T novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . NDUFS3 NM_004551 exon6 c.C607T p.P203S GACTTTCCTCTAT . 378.0 86.0 512.0 1.0 . 19 . . . none . . PASS Atlas-SNP ARHGEF17 9828 hgsc.bcm.edu hg19 11 73020521 73020521 + Missense_Mutation SNP G G T novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . ARHGEF17 NM_014786 exon1 c.G838T p.D280Y GACGACGACCGAG . 50.0 13.0 82.0 0.0 . 117 . . . none . . PASS Atlas-SNP KCTD14 65987 hgsc.bcm.edu hg19 11 77727916 77727916 + Missense_Mutation SNP C C A rs372373172 alternate_allele TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . KCTD14 NM_023930 exon2 c.G491T p.R164L GACTTCCGTGCTG . 195.0 8.0 227.0 0.0 . 32 . . . alt . . PASS Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49446075 49446075 + Missense_Mutation SNP G G A novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . MLL2 NM_003482 exon10 c.C1391T p.A464V CGTGATGCCTCAG . 180.0 48.0 166.0 0.0 . 1173 . . . none . . PASS Atlas-SNP HSPB8 26353 hgsc.bcm.edu hg19 12 119617182 119617182 + Missense_Mutation SNP G G T novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . HSPB8 NM_014365 exon1 c.G65T p.R22L CCTTCCGGGACTC . 271.0 14.0 315.0 0.0 . 45 . . . none . . PASS Atlas-SNP OGFOD2 79676 hgsc.bcm.edu hg19 12 123463804 123463804 + Missense_Mutation SNP C C G novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . OGFOD2 NM_024623 exon8 c.C784G p.R262G TGCTGCCGTGAGC . 70.0 13.0 86.0 0.0 . 18 . . . none . . PASS Atlas-SNP BTBD7 55727 hgsc.bcm.edu hg19 14 93730186 93730186 + Missense_Mutation SNP A A C novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . BTBD7 NM_001002860 exon4 c.T1316G p.F439C TCATAAAAAACAT . 75.0 16.0 89.0 0.0 . 112 . . . none . . PASS Atlas-SNP EPG5 57724 hgsc.bcm.edu hg19 18 43440155 43440155 + Missense_Mutation SNP A A G novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . EPG5 NM_020964 exon40 c.T6923C p.L2308P GTTAAAAGGGGCA . 90.0 18.0 145.0 0.0 . 199 . . . none . . PASS Atlas-SNP LPHN1 22859 hgsc.bcm.edu hg19 19 14263148 14263148 + Missense_Mutation SNP A A G novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . LPHN1 NM_001008701 exon22 c.T3637C p.S1213P GCGAGGAGGGATT . 69.0 7.0 110.0 0.0 . 107 . . . none . . PASS Atlas-SNP KCNQ2 3785 hgsc.bcm.edu hg19 20 62070959 62070959 + Silent SNP G G A novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . KCNQ2 NM_172106 exon6 c.C919T p.L307L CAGGCAGCGCGAA . 75.0 28.0 89.0 0.0 . 201 . . . none . . PASS Atlas-SNP L3MBTL2 83746 hgsc.bcm.edu hg19 22 41621916 41621916 + Missense_Mutation SNP A A G novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . L3MBTL2 NM_031488 exon12 c.A1475G p.K492R GTCAGAAGAATGA . 70.0 6.0 97.0 0.0 . 61 . . . none . . PASS Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 31152282 31152282 + Missense_Mutation SNP C C G novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . DMD NM_004006 exon77 c.G10951C p.D3651H TTGTGTCCTGGGG . 39.0 13.0 59.0 0.0 . 2127 . . . none . . PASS Atlas-SNP PSMD1 5707 hgsc.bcm.edu hg19 2 231943417 231943417 + Frame_Shift_Del DEL A A - novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . PSMD1 NM_001191037 exon10 c.1115delC p.A372fs . . 85.0 12.0 92.0 0.0 . 77 . 0.141176 0 none . . PASS Atlas-INDEL OR51A7 119687 hgsc.bcm.edu hg19 11 4928976 4928976 + Frame_Shift_Del DEL T T - novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . OR51A7 NM_001004749 exon1 c.376delA p.I126fs . . 117.0 15.0 147.0 0.0 . 86 . 0.128205 0 none . . PASS Atlas-INDEL CYP4F2 8529 hgsc.bcm.edu hg19 19 16003152 16003153 + Frame_Shift_Ins INS - - ATAT novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . CYP4F2 NM_001082 exon5 c.492_493insATAT p.M164fs . . 194.0 22.0 286.0 0.0 . 97 . 0.113402 0 none . . PASS Atlas-INDEL DZIP3 9666 hgsc.bcm.edu hg19 3 108324275 108324275 + Frame_Shift_Del DEL T T - novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . DZIP3 NM_014648 exon2 c.21delA p.E7fs . . 96.0 20.0 94.0 0.0 . 111 . 0.208333 0 none . . PASS Atlas-INDEL LIPH 200879 hgsc.bcm.edu hg19 3 185241864 185241865 + Frame_Shift_Del DEL AA AA - novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 AA AA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . LIPH NM_139248 exon5 c.713_714del p.238_238del . . 63.0 24.0 60.0 0.0 . 56 . 0.380952 0 none . . PASS Atlas-INDEL MIDN 90007 hgsc.bcm.edu hg19 19 1257046 1257048 + In_Frame_Del DEL GCT GCT - novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 GCT GCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . MIDN NM_177401 exon8 c.1181_1183del p.394_395del . . 40.0 10.0 70.0 0.0 . 34 . 0.25 0 none . . PASS Atlas-INDEL OGN 4969 hgsc.bcm.edu hg19 9 95148550 95148550 + Frame_Shift_Del DEL A A - novel TCGA-HE-7128-01A-11D-1961-08 TCGA-HE-7128-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a290bf48-c383-4a28-aed8-3d24910c3576 b9aafe9d-7537-47f4-9296-4e2581cfa7c3 . OGN NM_033014 exon6 c.660delG p.L220fs . . 50.0 16.0 55.0 0.0 . 26 . 0.32 0 none . . PASS Atlas-INDEL