Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm LMNA 4000 hgsc.bcm.edu hg19 1 156084843 156084843 + Missense_Mutation SNP A A G rs58436778 TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . LMNA NM_170707 exon1 c.A134G p.Y45C CGGTCTACATCGA . 316.0 93.0 231.0 0.0 . 31 . . . weak . . PASS Atlas-SNP XPR1 9213 hgsc.bcm.edu hg19 1 180843054 180843054 + Missense_Mutation SNP T T G novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . XPR1 NM_004736 exon13 c.T1784G p.V595G CTACTGTCTTTGC . 117.0 42.0 82.0 0.0 . 76 . . . none . . PASS Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228560567 228560567 + Missense_Mutation SNP C C G novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . OBSCN NM_001271223 exon105 c.C24959G p.A8320G CCCACGCAGGCCT . 175.0 58.0 120.0 0.0 . 2142 . . . none . . PASS Atlas-SNP USP34 9736 hgsc.bcm.edu hg19 2 61522309 61522309 + Silent SNP C C T novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . USP34 NM_014709 exon31 c.G4371A p.E1457E CGTAGACTCCCTC . 175.0 9.0 192.0 0.0 . 334 . . . none . . PASS Atlas-SNP CNTNAP5 129684 hgsc.bcm.edu hg19 2 125405341 125405341 + Missense_Mutation SNP A A T novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . CNTNAP5 NM_130773 exon13 c.A1880T p.K627M AGGACAAGATCTG . 202.0 87.0 220.0 0.0 . 405 . . . none . . PASS Atlas-SNP NCKAP5 344148 hgsc.bcm.edu hg19 2 133540804 133540804 + Missense_Mutation SNP T T C novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . NCKAP5 NM_207363 exon14 c.A3580G p.K1194E GATTCTTGGAGTC . 114.0 22.0 93.0 0.0 . 322 . . . none . . PASS Atlas-SNP R3HDM1 23518 hgsc.bcm.edu hg19 2 136399272 136399272 + Missense_Mutation SNP A A T novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . R3HDM1 NM_015361 exon15 c.A1386T p.Q462H TGGGCAAGTCGCA . 87.0 19.0 73.0 0.0 . 84 . . . none . . PASS Atlas-SNP KIF5C 3800 hgsc.bcm.edu hg19 2 149853801 149853801 + Missense_Mutation SNP C C A novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . KIF5C NM_004522 exon18 c.C2047A p.Q683K AGCTTCCAGGATA . 337.0 152.0 293.0 0.0 . 166 . . . none . . PASS Atlas-SNP NCL 4691 hgsc.bcm.edu hg19 2 232325488 232325488 + Missense_Mutation SNP C C G novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . NCL NM_005381 exon4 c.G703C p.D235H CTTCATCCTCAGC . 72.0 9.0 75.0 0.0 . 80 . . . none . . PASS Atlas-SNP PER2 8864 hgsc.bcm.edu hg19 2 239164455 239164455 + Silent SNP C C T novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . PER2 NM_022817 exon18 c.G2163A p.K721K CAGCTTCTTGAAG . 117.0 48.0 151.0 0.0 . 85 . . . none . . PASS Atlas-SNP HACL1 26061 hgsc.bcm.edu hg19 3 15616583 15616583 + Missense_Mutation SNP C C A novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . HACL1 NM_012260 exon10 c.G810T p.L270F AAATTGCAAAGCC . 472.0 196.0 457.0 0.0 . 33 . . . none . . PASS Atlas-SNP COPB2 9276 hgsc.bcm.edu hg19 3 139092573 139092573 + Missense_Mutation SNP C C T novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 COPB2,NS,carcinoma,0,1 COPB2 NM_004766 exon8 c.G829A p.V277M TGGCCACGCACCA . 138.0 43.0 98.0 1.0 . 80 . . . none . . PASS Atlas-SNP FSTL4 23105 hgsc.bcm.edu hg19 5 132556553 132556553 + Missense_Mutation SNP T T G novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . FSTL4 NM_015082 exon12 c.A1345C p.S449R CCACGCTGAGGCC . 109.0 43.0 120.0 0.0 . 74 . . . none . . PASS Atlas-SNP PCDHA9 9752 hgsc.bcm.edu hg19 5 140229249 140229249 + Missense_Mutation SNP C C T novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . PCDHA9 NM_031857 exon1 c.C1169T p.T390M CCCTGACGCCCCA . 194.0 84.0 177.0 0.0 . 373 . . . none . . PASS Atlas-SNP ZNF184 7738 hgsc.bcm.edu hg19 6 27419747 27419747 + Missense_Mutation SNP C C G novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . ZNF184 NM_007149 exon6 c.G1591C p.E531Q TACATTCATAAGC . 54.0 12.0 46.0 0.0 . 89 . . . none . . PASS Atlas-SNP TAF8 129685 hgsc.bcm.edu hg19 6 42025251 42025251 + Silent SNP G G A novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . TAF8 NM_138572 exon5 c.G489A p.P163P AACTCCGGTGAGT . 78.0 67.0 112.0 0.0 . 25 . . . none . . PASS Atlas-SNP SERAC1 84947 hgsc.bcm.edu hg19 6 158565380 158565380 + Missense_Mutation SNP C C T novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . SERAC1 NM_032861 exon7 c.G560A p.S187N AGATCACTCTCTT . 229.0 101.0 249.0 0.0 . 31 . . . none . . PASS Atlas-SNP DPY19L1 23333 hgsc.bcm.edu hg19 7 34979806 34979806 + Missense_Mutation SNP T T C novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . DPY19L1 NM_015283 exon19 c.A1604G p.Q535R TCTTCTTGGGGCA . 47.0 15.0 52.0 0.0 . 56 . . . none . . PASS Atlas-SNP ZNF713 349075 hgsc.bcm.edu hg19 7 56007671 56007671 + Missense_Mutation SNP G G A rs371670199 TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . ZNF713 NM_182633 exon4 c.G1265A p.R422H CTGTTCGCCACAG . 90.0 23.0 77.0 0.0 . 47 . . . weak . . PASS Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100679220 100679220 + Missense_Mutation SNP C C T rs374713003 TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . MUC17 NM_001040105 exon3 c.C4523T p.T1508M TCTCAACGCCTAG . 80.0 44.0 93.0 0.0 . 804 . . . weak . . PASS Atlas-SNP EPHB6 2051 hgsc.bcm.edu hg19 7 142562074 142562074 + Silent SNP C C T novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . EPHB6 NM_004445 exon7 c.C516T p.S172S CTCCTCCTCTTCT . 89.0 5.0 87.0 0.0 . 168 . . . none . . PASS Atlas-SNP DPP6 1804 hgsc.bcm.edu hg19 7 154598747 154598747 + Missense_Mutation SNP G G T novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . DPP6 NM_130797 exon16 c.G1591T p.D531Y TCCTGTGACCTGG . 60.0 11.0 50.0 0.0 . 383 . . . none . . PASS Atlas-SNP RIMS2 9699 hgsc.bcm.edu hg19 8 104924348 104924348 + Missense_Mutation SNP G G A rs375138135 TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 RIMS2_ENST00000507740,NS,carcinoma,0,13 RIMS2 NM_001100117 exon6 c.G1760A p.R587H ATAAGCGTCTAAA . 138.0 35.0 130.0 0.0 . 1357 . . . weak . . PASS Atlas-SNP WDR67 93594 hgsc.bcm.edu hg19 8 124109586 124109586 + Silent SNP A A C novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . WDR67 NM_001145088 exon6 c.A736C p.R246R GAAGCTAGGCAGC . 121.0 38.0 97.0 0.0 . 97 . . . none . . PASS Atlas-SNP MAMDC2 256691 hgsc.bcm.edu hg19 9 72728040 72728040 + Missense_Mutation SNP G G C novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . MAMDC2 NM_153267 exon5 c.G635C p.S212T TCAAGAGTGAACT . 87.0 33.0 106.0 0.0 . 55 . . . none . . PASS Atlas-SNP NOL8 55035 hgsc.bcm.edu hg19 9 95077665 95077665 + Silent SNP A A G novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . NOL8 NM_017948 exon7 c.T1242C p.N414N TTCTCTATTTTTG . 68.0 39.0 83.0 0.0 . 118 . . . none . . PASS Atlas-SNP KIAA1462 57608 hgsc.bcm.edu hg19 10 30317816 30317816 + Missense_Mutation SNP C C T novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . KIAA1462 NM_020848 exon3 c.G1261A p.V421I ACTGAACGAAGCC . 104.0 9.0 107.0 0.0 . 162 . . . none . . PASS Atlas-SNP PARD3 56288 hgsc.bcm.edu hg19 10 34673133 34673133 + Missense_Mutation SNP G G A novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . PARD3 NM_001184788 exon8 c.C940T p.H314Y TTTCATGTTCAGC . 85.0 12.0 78.0 0.0 . 131 . . . none . . PASS Atlas-SNP PDZD7 79955 hgsc.bcm.edu hg19 10 102770293 102770293 + Missense_Mutation SNP T T G novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . PDZD7 NM_001195263 exon15 c.A2353C p.S785R CCCGGCTGCTGCG . 400.0 18.0 452.0 0.0 . 101 . . . none . . PASS Atlas-SNP FGF4 2249 hgsc.bcm.edu hg19 11 69588117 69588117 + Missense_Mutation SNP G G A novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 FGF4,NS,lymphoid_neoplasm,0,1 FGF4 NM_002007 exon3 c.C581T p.S194L GTGGGCGACACTC . 174.0 82.0 221.0 0.0 . 13 . . . none . . PASS Atlas-SNP MAML2 84441 hgsc.bcm.edu hg19 11 95825257 95825257 + Silent SNP T T C novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 MAML2,colon,carcinoma,0,1 MAML2 NM_032427 exon2 c.A1938G p.Q646Q CTGCTGTTGTTGC . 53.0 3.0 70.0 1.0 . 94 . . . none . . PASS Atlas-SNP AVPR1A 552 hgsc.bcm.edu hg19 12 63544413 63544413 + Silent SNP G G C novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . AVPR1A NM_000706 exon1 c.C204G p.G68G GCTGTTGCCCAGC . 115.0 21.0 76.0 0.0 . 85 . . . none . . PASS Atlas-SNP SPERT 220082 hgsc.bcm.edu hg19 13 46287523 46287523 + Silent SNP G G A novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . SPERT NM_152719 exon3 c.G363A p.V121V GCGGGTGCAGCTC . 76.0 62.0 144.0 0.0 . 54 . . . none . . PASS Atlas-SNP KCNJ18 100134444 hgsc.bcm.edu hg19 17 21318791 21318791 + Missense_Mutation SNP T T A novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . . NM_001194958 exon3 c.T137A p.F46Y ACCGCTTCGTCAA . 125.0 14.0 108.0 0.0 . . . . . none . . PASS Atlas-SNP MYO9B 4650 hgsc.bcm.edu hg19 19 17305947 17305947 + Silent SNP G G T novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . MYO9B NM_001130065 exon22 c.G3711T p.T1237T GAAGACGCTGCCC . 116.0 5.0 162.0 0.0 . 264 . . . none . . PASS Atlas-SNP DMKN 93099 hgsc.bcm.edu hg19 19 36004269 36004269 + Missense_Mutation SNP C C T novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . DMKN NM_001190347 exon1 c.G109A p.E37K GGGCCTCCCCAAT . 44.0 9.0 39.0 0.0 . 116 . . . none . . PASS Atlas-SNP PRMT1 3276 hgsc.bcm.edu hg19 19 50185321 50185321 + Missense_Mutation SNP G G A novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . PRMT1 NM_001536 exon4 c.G347A p.G116E TCATCGGGGTGAG . 85.0 40.0 89.0 0.0 . 31 . . . none . . PASS Atlas-SNP ZNF816 125893 hgsc.bcm.edu hg19 19 53453491 53453491 + Missense_Mutation SNP C C G novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . ZNF816 NM_001202457 exon4 c.G1537C p.E513Q CACATTCTTCACA . 68.0 7.0 74.0 0.0 . 73 . . . none . . PASS Atlas-SNP RFPL4A 342931 hgsc.bcm.edu hg19 19 56274128 56274128 + Missense_Mutation SNP C C A novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . RFPL4A NM_001145014 exon3 c.C451A p.H151N GGCCGCCATTACT . 392.0 85.0 391.0 0.0 . 8 . . . none . . PASS Atlas-SNP NLRP4 147945 hgsc.bcm.edu hg19 19 56388499 56388499 + Missense_Mutation SNP T T C novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . NLRP4 NM_134444 exon8 c.T2663C p.L888P GGGCTCTGACGCA . 116.0 37.0 159.0 0.0 . 331 . . . none . . PASS Atlas-SNP LRRN4 164312 hgsc.bcm.edu hg19 20 6031523 6031523 + Missense_Mutation SNP G G T novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . LRRN4 NM_152611 exon3 c.C762A p.N254K CTGCAGGTTGGGG . 165.0 101.0 191.0 0.0 . 54 . . . none . . PASS Atlas-SNP CD93 22918 hgsc.bcm.edu hg19 20 23065706 23065706 + Missense_Mutation SNP G G A rs139005135 TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . CD93 NM_012072 exon1 c.C1124T p.P375L CCGCCCGGCTCAT . 154.0 67.0 170.0 0.0 . 84 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP SIM2 6493 hgsc.bcm.edu hg19 21 38115795 38115795 + Missense_Mutation SNP T T C novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . SIM2 NM_005069 exon9 c.T1106C p.L369S GGAAATTAGTGAA . 230.0 96.0 234.0 0.0 . 55 . . . none . . PASS Atlas-SNP PCNT 5116 hgsc.bcm.edu hg19 21 47831608 47831608 + Missense_Mutation SNP A A G novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . PCNT NM_006031 exon28 c.A5621G p.N1874S AGAGAAATTTAGA . 125.0 56.0 130.0 0.0 . 283 . . . none . . PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765164 66765164 + Missense_Mutation SNP A A T novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . AR NM_000044 exon1 c.A176T p.Q59L TGCAGCAGCAGCA . 119.0 16.0 72.0 0.0 . 249 . . . none . . PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765222 66765222 + Silent SNP G G A novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . AR NM_000044 exon1 c.G234A p.Q78Q GCAGCAGCAGCAA . 150.0 12.0 92.0 0.0 . 249 . . . none . . PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765223 66765223 + Missense_Mutation SNP C C G novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . AR NM_000044 exon1 c.C235G p.Q79E CAGCAGCAGCAAG . 152.0 12.0 94.0 0.0 . 249 . . . none . . PASS Atlas-SNP SMARCA1 6594 hgsc.bcm.edu hg19 X 128652406 128652406 + Nonsense_Mutation SNP G G A novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . SMARCA1 NM_139035 exon2 c.C193T p.Q65X TGAGTTGAAATGA . 213.0 193.0 253.0 0.0 . 126 . . . none . . PASS Atlas-SNP ND4 0 hgsc.bcm.edu hg19 MT 10809 10809 + Missense_Mutation SNP T T C novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . . ENST00000361381 exon1 c.T50C p.L17P CATGACTTTCCAA . 37.0 5.0 20.0 0.0 . . . . . none . . PASS Atlas-SNP ANK2 287 hgsc.bcm.edu hg19 4 114257900 114257915 + Frame_Shift_Del DEL AGATGCACCAACCTTA AGATGCACCAACCTTA - novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 AGATGCACCAACCTTA AGATGCACCAACCTTA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . ANK2 NM_001148 exon31 c.3758_3773del p.1253_1258del . . 66.0 41.0 158.0 0.0 . 576 . 0.621212 0 none . . PASS Atlas-Indel,Pindel BAP1 8314 hgsc.bcm.edu hg19 3 52437709 52437709 + Frame_Shift_Del DEL G G - novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . BAP1 NM_004656 exon13 c.1453delT p.S485fs . . 44.0 36.0 74.0 0.0 . 371 . 0.818182 0 none . . PASS Atlas-Indel,Pindel CCDC104 112942 hgsc.bcm.edu hg19 2 55772097 55772138 + In_Frame_Del DEL AGGAGATTGCTTGCAGAGAAACTCAAAGAAGAAGTTATTAAT AGGAGATTGCTTGCAGAGAAACTCAAAGAAGAAGTTATTAAT - novel TCGA-G7-A8LD-01A-11D-A35Z-10 TCGA-G7-A8LD-10A-01D-A35Z-10 AGGAGATTGCTTGCAGAGAAACTCAAAGAAGAAGTTATTAAT AGGAGATTGCTTGCAGAGAAACTCAAAGAAGAAGTTATTAAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 755a9884-f632-4260-bf9d-a84b5d86aa87 632fa524-d179-4f7e-9cbc-b57a32d1fb38 . CCDC104 NM_080667 exon10 c.981_1022del p.327_341del . . 541.0 78.0 750.0 0.0 . 35 . 0.144177 0 none . . PASS Atlas-Indel,Pindel