Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
C1orf173	127254	hgsc.bcm.edu	hg19	1	75114999	75114999	+	Silent	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	C1orf173	NM_001002912	exon2	c.G24T	p.G8G	AAGTAACCTAAAA	.	76.0	25.0	115.0	0.0	.	380	.	.	.	none	.	.	PASS	Atlas-SNP
INTS3	65123	hgsc.bcm.edu	hg19	1	153736638	153736638	+	Silent	SNP	A	A	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	INTS3	NM_023015	exon18	c.A1866G	p.L622L	CTGCCTACAGGAG	.	107.0	46.0	172.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
FAIM3	9214	hgsc.bcm.edu	hg19	1	207085119	207085119	+	Silent	SNP	G	G	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	FAIM3	NM_005449	exon4	c.C666G	p.P222P	CGTCTGGGGCTTG	.	97.0	26.0	137.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
PIGR	5284	hgsc.bcm.edu	hg19	1	207105817	207105817	+	Silent	SNP	C	C	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PIGR	NM_002644	exon8	c.G1992C	p.R664R	CCTGTGCCGGGCT	.	97.0	34.0	157.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
OR2T1	26696	hgsc.bcm.edu	hg19	1	248569960	248569960	+	Missense_Mutation	SNP	G	G	T	rs150412216	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	OR2T1	NM_030904	exon1	c.G665T	p.R222L	ATTCCCGGGAGAT	.	78.0	4.0	109.0	0.0	.	89	.	.	.	alt	G|0.998;A|0.002	.	PASS	Atlas-SNP
PLEKHB2	55041	hgsc.bcm.edu	hg19	2	131897791	131897791	+	Missense_Mutation	SNP	G	G	C	rs143964327		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PLEKHB2	NM_001267065	exon7	c.G499C	p.V167L	ACTCAAGTTGTCT	.	49.0	20.0	61.0	0.0	.	47	.	.	.	weak	G|1.000;C|0.000	0.000	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179567316	179567316	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	TTN	NM_001267550	exon107	c.G30298T	p.E10100X	ACACTTCACACTC	.	89.0	43.0	140.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
HSPE1	3336	hgsc.bcm.edu	hg19	2	198365946	198365946	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	HSPE1	NM_002157	exon2	c.C152G	p.S51W	TTGGATCGGGTTC	.	23.0	10.0	38.0	0.0	.	2	.	.	.	none	.	.	PASS	Atlas-SNP
DNASE1L3	1776	hgsc.bcm.edu	hg19	3	58179114	58179114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	DNASE1L3	NM_004944	exon7	c.A757G	p.S253G	AAACACTGTTTGA	.	58.0	20.0	119.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
HERC3	8916	hgsc.bcm.edu	hg19	4	89575198	89575198	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	HERC3	NM_014606	exon7	c.G691T	p.E231X	GATCGAGAATCTC	.	36.0	26.0	94.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
MYOZ3	91977	hgsc.bcm.edu	hg19	5	150050078	150050078	+	Missense_Mutation	SNP	G	G	A	rs370373786		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MYOZ3	NM_001122853	exon3	c.G94A	p.V32M	CTGAGCGTGCCCC	.	23.0	16.0	40.0	0.0	.	21	.	.	.	weak	.	.	PASS	Atlas-SNP
KCNK5	8645	hgsc.bcm.edu	hg19	6	39159334	39159334	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	KCNK5	NM_003740	exon5	c.C832T	p.Q278X	TCACCTGCAGGGC	.	150.0	47.0	252.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
MB21D1	115004	hgsc.bcm.edu	hg19	6	74135070	74135070	+	Silent	SNP	A	A	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MB21D1	NM_138441	exon5	c.T1449C	p.Y483Y	AATAAAATAATTC	.	39.0	17.0	73.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	71.0	5.0	94.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
CPED1	79974	hgsc.bcm.edu	hg19	7	120629777	120629777	+	Silent	SNP	C	C	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	.	NM_001105533	exon1	c.C102G	p.T34T	TCTGACCCTCCGA	.	86.0	36.0	146.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121679512	121679512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PTPRZ1	NM_002851	exon20	c.A5507T	p.K1836I	AGAGAAAATGTGA	.	65.0	35.0	82.0	0.0	.	605	.	.	.	none	.	.	PASS	Atlas-SNP
SF3B2	10992	hgsc.bcm.edu	hg19	11	65829382	65829382	+	Silent	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	SF3B2	NM_006842	exon16	c.C1890A	p.P630P	CCCTCCCCCATGG	.	38.0	20.0	64.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
ARAP1	116985	hgsc.bcm.edu	hg19	11	72406598	72406598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	ARAP1	NM_001040118	exon25	c.A3496G	p.S1166G	TCCCACTGGCAGT	.	30.0	12.0	69.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
CAPZA3	93661	hgsc.bcm.edu	hg19	12	18892035	18892035	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	CAPZA3	NM_033328	exon1	c.T833A	p.L278Q	TGAATCTGGTGAT	.	83.0	35.0	135.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
MTUS2	23281	hgsc.bcm.edu	hg19	13	29600351	29600351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MTUS2	NM_001033602	exon1	c.G1546A	p.V516I	ACATCTGTTGCTG	.	56.0	25.0	79.0	0.0	.	279	.	.	.	none	.	.	PASS	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35733740	35733740	+	Silent	SNP	A	A	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	NBEA	NM_015678	exon22	c.A3432C	p.T1144T	TAGTACATCATTT	.	34.0	5.0	33.0	0.0	.	340	.	.	.	none	.	.	PASS	Atlas-SNP
TXNDC16	57544	hgsc.bcm.edu	hg19	14	52907333	52907333	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	TXNDC16	NM_020784	exon19	c.C1952G	p.T651R	ACCAGTGTCAATA	.	39.0	4.0	44.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
MORF4L1	10933	hgsc.bcm.edu	hg19	15	79185887	79185887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MORF4L1	NM_206839	exon10	c.T664C	p.Y222H	CTCTTTTATCTTC	.	96.0	33.0	102.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
FLYWCH2	114984	hgsc.bcm.edu	hg19	16	2946458	2946458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	FLYWCH2	NM_001142499	exon3	c.T8G	p.L3R	TGCCCCTGCCCGA	.	33.0	11.0	45.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
FLYWCH2	114984	hgsc.bcm.edu	hg19	16	2946461	2946461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	FLYWCH2	NM_001142499	exon3	c.C11A	p.P4H	CCCTGCCCGAGCC	.	40.0	14.0	49.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
RBBP6	5930	hgsc.bcm.edu	hg19	16	24582258	24582258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	RBBP6	NM_006910	exon18	c.A3871C	p.T1291P	AAGCGAACTGTGA	.	63.0	26.0	103.0	0.0	.	158	.	.	.	none	.	.	PASS	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	hg19	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879	bycluster	TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	PRKCSH,caecum,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA	.	13.0	4.0	19.0	2.0	.	55	.	.	.	weak	.	.	PASS	Atlas-SNP
ZNF700	90592	hgsc.bcm.edu	hg19	19	12060128	12060128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	ZNF700	NM_001271848	exon4	c.C1298T	p.A433V	GATCTGCCTCACA	.	63.0	24.0	75.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
PLEKHG2	64857	hgsc.bcm.edu	hg19	19	39914552	39914552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PLEKHG2	NM_022835	exon19	c.C2779G	p.L927V	CAAGACCTTCCGG	.	80.0	32.0	108.0	0.0	.	329	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF45	7596	hgsc.bcm.edu	hg19	19	44418234	44418234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	ZNF45	NM_003425	exon10	c.G1354A	p.G452S	TGAAGCCCTTGCC	.	71.0	23.0	128.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
SLC8A2	6543	hgsc.bcm.edu	hg19	19	47969527	47969527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	SLC8A2	NM_015063	exon2	c.G134A	p.G45E	TAGGACCCCTGGC	.	9.0	7.0	10.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
NAPB	63908	hgsc.bcm.edu	hg19	20	23370612	23370612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	NAPB	NM_022080	exon7	c.T532C	p.Y178H	TCTGGTACTGCTC	.	116.0	52.0	141.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
RIPK4	54101	hgsc.bcm.edu	hg19	21	43161570	43161570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	RIPK4	NM_020639	exon8	c.G1783T	p.V595L	CACTCACCCCCGG	.	91.0	29.0	146.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
CCT8L2	150160	hgsc.bcm.edu	hg19	22	17073382	17073382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	CCT8L2	NM_014406	exon1	c.G59A	p.R20K	CTCTCCCTTGGGT	.	32.0	26.0	105.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15713	15713	+	Missense_Mutation	SNP	T	T	C	rs374778622	alternate_allele	TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	.	ENST00000361789	exon1	c.T967C	p.S323P	AGCCAATCACTTT	.	66.0	50.0	0.0	0.0	.	.	.	.	.	alt	A|0.999;G|0.001	.	PASS	Atlas-SNP
LAMTOR4	389541	hgsc.bcm.edu	hg19	7	99746597	99746598	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	.	NM_001008395	exon1	c.2_3insG	p.M1fs	.	.	86.0	23.0	132.0	0.0	.	.	.	0.267442	0	none	.	.	PASS	Atlas-INDEL
TRPC5	7224	hgsc.bcm.edu	hg19	X	111090414	111090416	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	TCA	TCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	TRPC5	NM_012471	exon6	c.1627_1629del	p.543_543del	.	.	150.0	72.0	198.0	0.0	.	142	.	0.48	0	none	.	.	PASS	Atlas-INDEL
FLYWCH2	114984	hgsc.bcm.edu	hg19	16	2946454	2946456	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	FLYWCH2	NM_001142499	exon3	c.3_5del	p.1_2del	.	.	29.0	11.0	42.0	0.0	.	12	.	0.37931	0	none	.	.	PASS	Atlas-INDEL
HLA-DPB1	3115	hgsc.bcm.edu	hg19	6	33048613	33048613	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	HLA-DPB1	NM_002121	exon2	c.264delG	p.W88X	.	.	56.0	12.0	91.0	0.0	.	28	.	0.214286	0	none	.	.	PASS	Atlas-INDEL