Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm ZSCAN20 7579 hgsc.bcm.edu hg19 1 33960785 33960785 + Silent SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ZSCAN20 NM_145238 exon8 c.C2841T p.I947I GCTCATCACACAC . 39.0 36.0 108.0 0.0 . 107 . . . none . . PASS Atlas-SNP URB2 9816 hgsc.bcm.edu hg19 1 229770863 229770863 + Missense_Mutation SNP A A G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . URB2 NM_014777 exon4 c.A503G p.Q168R TAGCCCAGTTGTT . 26.0 21.0 105.0 0.0 . 152 . . . none . . PASS Atlas-SNP OR2T3 343173 hgsc.bcm.edu hg19 1 248637423 248637423 + Missense_Mutation SNP G G T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . OR2T3 NM_001005495 exon1 c.G772T p.G258C CTCTTCGGTGCTT . 392.0 20.0 647.0 0.0 . 79 . . . none . . PASS Atlas-SNP ROCK2 9475 hgsc.bcm.edu hg19 2 11361482 11361482 + Silent SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c ROCK2_ENST00000315872,NS,carcinoma,0,2 ROCK2 NM_004850 exon9 c.G1101T p.T367T AGCTGCCGCTATT . 145.0 7.0 137.0 0.0 . 224 . . . none . . PASS Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21229324 21229324 + Silent SNP G G T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c APOB,NS,carcinoma,0,1 APOB NM_000384 exon26 c.C10416A p.T3472T TTTAGCGGTAGAG . 135.0 12.0 166.0 0.0 . 761 . . . none . . PASS Atlas-SNP GFPT1 2673 hgsc.bcm.edu hg19 2 69553334 69553334 + Missense_Mutation SNP A A T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . GFPT1 NM_001244710 exon20 c.T2087A p.V696E ACAGTCACAGATT . 60.0 22.0 46.0 0.0 . 38 . . . none . . PASS Atlas-SNP NCKAP5 344148 hgsc.bcm.edu hg19 2 133541732 133541732 + Missense_Mutation SNP C C G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . NCKAP5 NM_207363 exon14 c.G2652C p.W884C CTGGACCCAGTCC . 85.0 52.0 174.0 0.0 . 322 . . . none . . PASS Atlas-SNP ITM2C 81618 hgsc.bcm.edu hg19 2 231741583 231741583 + Silent SNP G G C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ITM2C NM_030926 exon4 c.G462C p.A154A GACTGCGTACCAT . 107.0 50.0 169.0 0.0 . 17 . . . none . . PASS Atlas-SNP CCR2 729230 hgsc.bcm.edu hg19 3 46399085 46399085 + Missense_Mutation SNP T T A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . CCR2 NM_001123041 exon2 c.T67A p.F23I ACCACCTTTTTTG . 280.0 136.0 280.0 1.0 . 103 . . . none . . PASS Atlas-SNP SLC26A6 65010 hgsc.bcm.edu hg19 3 48668741 48668741 + Splice_Site SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . SLC26A6 NM_001040454 exon8 c.841-2A>G . ATGAGCTGTGGGA . 13.0 8.0 24.0 0.0 . 45 . . . none . . PASS Atlas-SNP ZMYND10 51364 hgsc.bcm.edu hg19 3 50379017 50379017 + Nonsense_Mutation SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ZMYND10 NM_015896 exon11 c.G1235A p.W412X CAATACCACTCAT . 78.0 30.0 126.0 0.0 . 37 . . . none . . PASS Atlas-SNP FAM208A 23272 hgsc.bcm.edu hg19 3 56658883 56658883 + Missense_Mutation SNP G G C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . FAM208A NM_001112736 exon22 c.C4291G p.Q1431E GTTGCTGTATGTT . 147.0 58.0 121.0 0.0 . 113 . . . none . . PASS Atlas-SNP ACOX2 8309 hgsc.bcm.edu hg19 3 58517532 58517532 + Silent SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ACOX2 NM_003500 exon6 c.G591T p.R197R GGCTGACCGTCCC . 34.0 18.0 79.0 0.0 . 53 . . . none . . PASS Atlas-SNP EPHA3 2042 hgsc.bcm.edu hg19 3 89521663 89521663 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . EPHA3 NM_005233 exon16 c.C2740A p.R914S ACCTTCCGCACAA . 249.0 16.0 250.0 0.0 . 501 . . . none . . PASS Atlas-SNP ZBTB11 27107 hgsc.bcm.edu hg19 3 101370105 101370105 + Missense_Mutation SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ZBTB11 NM_014415 exon11 c.G3067A p.V1023I CTAATACATAATT . 168.0 70.0 181.0 0.0 . 77 . . . none . . PASS Atlas-SNP KIAA2018 205717 hgsc.bcm.edu hg19 3 113376409 113376409 + Missense_Mutation SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . KIAA2018 NM_001009899 exon7 c.A4120G p.M1374V TGACCATCATTTG . 96.0 38.0 112.0 0.0 . 180 . . . none . . PASS Atlas-SNP FSTL1 11167 hgsc.bcm.edu hg19 3 120122159 120122159 + Silent SNP A A G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . FSTL1 NM_007085 exon8 c.T624C p.N208N ATCAGCATTTTCA . 156.0 65.0 132.0 0.0 . 43 . . . none . . PASS Atlas-SNP ETV5 2119 hgsc.bcm.edu hg19 3 185766603 185766603 + Missense_Mutation SNP G G A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ETV5 NM_004454 exon13 c.C1358T p.A453V AAGAGGGCATCTG . 43.0 25.0 73.0 0.0 . 106 . . . none . . PASS Atlas-SNP SLC4A4 8671 hgsc.bcm.edu hg19 4 72332250 72332250 + Silent SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . SLC4A4 NM_001098484 exon13 c.C1587A p.T529T CAGCACCGGACCT . 178.0 11.0 183.0 0.0 . 269 . . . none . . PASS Atlas-SNP ANK2 287 hgsc.bcm.edu hg19 4 114177035 114177035 + Missense_Mutation SNP C C A rs143043717 bycluster;alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c ANK2,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1 ANK2 NM_001148 exon11 c.C1135A p.R379S CACTACCGTGTAA . 198.0 13.0 291.0 0.0 . 576 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126369689 126369689 + Silent SNP G G T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c FAT4_ENST00000394329,NS,carcinoma,0,2 FAT4 NM_024582 exon9 c.G7518T p.S2506S TCTTTCGGGTAGA . 165.0 8.0 123.0 0.0 . 1752 . . . none . . PASS Atlas-SNP FAT1 2195 hgsc.bcm.edu hg19 4 187539870 187539870 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . FAT1 NM_005245 exon10 c.G7870T p.D2624Y CCTCATCGGCATC . 84.0 37.0 79.0 0.0 . 500 . . . none . . PASS Atlas-SNP FAT1 2195 hgsc.bcm.edu hg19 4 187630250 187630250 + Silent SNP C C A rs374978739 alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . FAT1 NM_005245 exon2 c.G732T p.T244T GTGCACCGTTAGC . 226.0 11.0 277.0 0.0 . 500 . . . alt . . PASS Atlas-SNP PCDHB4 56131 hgsc.bcm.edu hg19 5 140502471 140502471 + Silent SNP G G T rs375984500 alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PCDHB4 NM_018938 exon1 c.G891T p.T297T AGTCACGGGAGAA . 275.0 14.0 239.0 0.0 . 177 . . . alt . . PASS Atlas-SNP ECT2L 345930 hgsc.bcm.edu hg19 6 139167797 139167797 + Silent SNP C C A rs376022291 alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ECT2L NM_001195037 exon7 c.C886A p.R296R TCATCCCGGATTC . 497.0 20.0 395.0 0.0 . 75 . . . alt . . PASS Atlas-SNP AKAP12 9590 hgsc.bcm.edu hg19 6 151626981 151626981 + Missense_Mutation SNP C C G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . AKAP12 NM_005100 exon3 c.C262G p.L88V GGAGCCCTGAACG . 34.0 13.0 48.0 0.0 . 170 . . . none . . PASS Atlas-SNP PGAM2 5224 hgsc.bcm.edu hg19 7 44105125 44105125 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PGAM2 NM_000290 exon1 c.G4T p.A2S GAGTGGCCATGGT . 107.0 38.0 136.0 0.0 . 20 . . . none . . PASS Atlas-SNP TMED4 222068 hgsc.bcm.edu hg19 7 44621125 44621125 + Missense_Mutation SNP A A G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . TMED4 NM_182547 exon3 c.T310C p.S104P TGTGGGAGGTGAA . 76.0 41.0 85.0 0.0 . 13 . . . none . . PASS Atlas-SNP ADAM28 10863 hgsc.bcm.edu hg19 8 24209520 24209520 + Silent SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ADAM28 NM_014265 exon21 c.T2199C p.H733H GCCCCATGTGTAT . 135.0 56.0 116.0 0.0 . 100 . . . none . . PASS Atlas-SNP TTI2 80185 hgsc.bcm.edu hg19 8 33369626 33369626 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . . NM_001265581 exon2 c.G506T p.R169L ACTTCCCGAGATC . 173.0 12.0 260.0 0.0 . . . . . none . . PASS Atlas-SNP XKR4 114786 hgsc.bcm.edu hg19 8 56435874 56435874 + Silent SNP C C G rs4263738 alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . XKR4 NM_052898 exon3 c.C1041G p.A347A CCTGGCCTGGGCC . 39.0 19.0 78.0 0.0 . 104 . . . alt . . PASS Atlas-SNP HNF4G 3174 hgsc.bcm.edu hg19 8 76465335 76465335 + Missense_Mutation SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . HNF4G NM_004133 exon5 c.T518C p.I173T CAAGTATTGGTGA . 120.0 58.0 83.0 0.0 . 111 . . . none . . PASS Atlas-SNP PTK2 5747 hgsc.bcm.edu hg19 8 141745382 141745382 + Silent SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PTK2 NM_005607 exon22 c.G2064A p.R688R CCTGGGCCGCCTG . 29.0 15.0 41.0 0.0 . 311 . . . none . . PASS Atlas-SNP TBC1D13 54662 hgsc.bcm.edu hg19 9 131565636 131565636 + Missense_Mutation SNP C C G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . TBC1D13 NM_018201 exon8 c.C651G p.I217M GTTCATCTACGCC . 65.0 34.0 109.0 0.0 . 27 . . . none . . PASS Atlas-SNP MCM10 55388 hgsc.bcm.edu hg19 10 13222572 13222572 + Missense_Mutation SNP A A C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . MCM10 NM_182751 exon7 c.A898C p.I300L GGGGTTATATTGA . 192.0 88.0 182.0 0.0 . 76 . . . none . . PASS Atlas-SNP C10orf68 79741 hgsc.bcm.edu hg19 10 33134884 33134884 + Silent SNP C C A rs201575874 by1000genomes;alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . C10orf68 NM_024688 exon16 c.C1330A p.R444R AGTCACCGAGGTA . 297.0 14.0 219.0 0.0 . 75 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP BMS1 9790 hgsc.bcm.edu hg19 10 43315762 43315762 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c BMS1,colon,carcinoma,-1,1 BMS1 NM_014753 exon16 c.C2659A p.R887S TACGTCCGCATTG . 130.0 7.0 158.0 0.0 . 132 . . . none . . PASS Atlas-SNP PCBD1 5092 hgsc.bcm.edu hg19 10 72643783 72643783 + Missense_Mutation SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PCBD1 NM_000281 exon4 c.A239G p.H80R CACTCATGGGTGC . 61.0 20.0 62.0 0.0 . 8 . . . none . . PASS Atlas-SNP TSG101 7251 hgsc.bcm.edu hg19 11 18505434 18505434 + Missense_Mutation SNP G G T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c TSG101,NS,carcinoma,0,1 TSG101 NM_006292 exon8 c.C826A p.R276S CTAAACGGGTAAC . 291.0 12.0 321.0 1.0 . 43 . . . none . . PASS Atlas-SNP OR4C13 283092 hgsc.bcm.edu hg19 11 49974076 49974076 + Silent SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . OR4C13 NM_001001955 exon1 c.C102A p.I34I CTACATCAACGCC . 307.0 35.0 299.0 0.0 . 96 . . . none . . PASS Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92086947 92086947 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c FAT3_ENST00000409404,right_upper_lobe,carcinoma,0,2 FAT3 NM_001008781 exon1 c.C1669A p.R557S CCATACCGCCATG . 149.0 7.0 153.0 0.0 . 1822 . . . none . . PASS Atlas-SNP HEBP1 50865 hgsc.bcm.edu hg19 12 13140120 13140120 + Missense_Mutation SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . HEBP1 NM_015987 exon3 c.A364G p.I122V CCTCAATCTTAAC . 187.0 75.0 211.0 0.0 . 16 . . . none . . PASS Atlas-SNP PPFIBP1 8496 hgsc.bcm.edu hg19 12 27809595 27809595 + Missense_Mutation SNP A A C rs369414467 alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PPFIBP1 NM_177444 exon10 c.A836C p.E279A AATCTGAAGTAAA . 176.0 79.0 113.0 0.0 . 153 . . . alt . . PASS Atlas-SNP GPD1 2819 hgsc.bcm.edu hg19 12 50503242 50503242 + Nonsense_Mutation SNP C C G rs116736822 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . GPD1 NM_005276 exon8 c.C990G p.Y330X GTGCTACGAGGGC . 87.0 26.0 135.0 0.0 . 23 . . . alt C|0.998;T|0.002 . PASS Atlas-SNP LRIG3 121227 hgsc.bcm.edu hg19 12 59271290 59271290 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . LRIG3 NM_153377 exon15 c.G2428T p.V810F TCACGACACCCAC . 61.0 39.0 98.0 0.0 . 120 . . . none . . PASS Atlas-SNP PLXNC1 10154 hgsc.bcm.edu hg19 12 94613897 94613897 + Silent SNP C C A rs146510015 bycluster;alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c PLXNC1,NS,carcinoma,0,1 PLXNC1 NM_005761 exon6 c.C1660A p.R554R CCCAACCGGACCT . 197.0 15.0 338.0 0.0 . 135 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP ANKRD13A 88455 hgsc.bcm.edu hg19 12 110457067 110457067 + Missense_Mutation SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ANKRD13A NM_033121 exon6 c.T668C p.V223A GGGAAGTTGAGCG . 92.0 39.0 114.0 0.0 . 39 . . . none . . PASS Atlas-SNP SBNO1 55206 hgsc.bcm.edu hg19 12 123780521 123780521 + Silent SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . SBNO1 NM_001167856 exon31 c.G4116T p.A1372A TTGGACCGCAAGC . 297.0 15.0 367.0 0.0 . 138 . . . none . . PASS Atlas-SNP TMEM260 0 hgsc.bcm.edu hg19 14 57075923 57075923 + Silent SNP C C A rs140983222 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . . NM_017799 exon6 c.C736A p.R246R CACGCCCGGTGGA . 311.0 14.0 497.0 0.0 . . . . . alt C|1.000;T|0.000 . PASS Atlas-SNP SIX4 51804 hgsc.bcm.edu hg19 14 61190290 61190290 + Missense_Mutation SNP A A C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . SIX4 NM_017420 exon1 c.T503G p.I168S TCGAGGATGCTGT . 20.0 9.0 26.0 0.0 . 69 . . . none . . PASS Atlas-SNP IREB2 3658 hgsc.bcm.edu hg19 15 78765688 78765688 + Missense_Mutation SNP G G A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . IREB2 NM_004136 exon8 c.G988A p.V330I CCTTTTGTTACAT . 106.0 48.0 115.0 0.0 . 106 . . . none . . PASS Atlas-SNP STX4 6810 hgsc.bcm.edu hg19 16 31046334 31046334 + Silent SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . STX4 NM_004604 exon5 c.C351A p.S117S TAACTCCGTCAAC . 220.0 9.0 169.0 0.0 . 28 . . . none . . PASS Atlas-SNP CES3 23491 hgsc.bcm.edu hg19 16 67000741 67000741 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . CES3 NM_024922 exon8 c.C1035A p.N345K CAACAACCATGAG . 223.0 85.0 248.0 0.0 . 56 . . . none . . PASS Atlas-SNP FAM65A 79567 hgsc.bcm.edu hg19 16 67576026 67576026 + Missense_Mutation SNP G G A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . FAM65A NM_001193523 exon13 c.G1397A p.R466Q ACAGTCGGACTCT . 155.0 35.0 139.0 0.0 . 104 . . . none . . PASS Atlas-SNP CHMP1A 5119 hgsc.bcm.edu hg19 16 89717999 89717999 + Missense_Mutation SNP G G C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . CHMP1A NM_002768 exon3 c.C83G p.A28G TGCTCCGCCTTGG . 75.0 43.0 89.0 0.0 . 15 . . . none . . PASS Atlas-SNP FANCA 2175 hgsc.bcm.edu hg19 16 89874755 89874755 + Silent SNP C C A rs143314367 byfrequency;alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . FANCA NM_000135 exon6 c.G543T p.A181A CCACACCGCTTCA . 368.0 15.0 206.0 0.0 . 99 . . . alt C|0.999;T|0.001 . PASS Atlas-SNP SPAG5 10615 hgsc.bcm.edu hg19 17 26911492 26911492 + Missense_Mutation SNP C C A rs140086700 alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . SPAG5 NM_006461 exon12 c.G2168T p.R723L TGAGCCCGGAGAT . 220.0 10.0 231.0 0.0 . 92 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP ZNF207 7756 hgsc.bcm.edu hg19 17 30696350 30696350 + Missense_Mutation SNP A A T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ZNF207 NM_001098507 exon11 c.A1201T p.N401Y CAACGTAATCTTC . 96.0 48.0 117.0 0.0 . 32 . . . none . . PASS Atlas-SNP PPM1D 8493 hgsc.bcm.edu hg19 17 58740837 58740837 + Missense_Mutation SNP G G A rs200809297 TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PPM1D NM_003620 exon6 c.G1742A p.R581Q CCATGCGACGCAG . 104.0 52.0 109.0 0.0 . 50 . . . weak G|0.999;A|0.001 0.001 PASS Atlas-SNP ANKRD12 23253 hgsc.bcm.edu hg19 18 9275635 9275635 + Silent SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c ANKRD12,NS,carcinoma,0,1 ANKRD12 NM_015208 exon11 c.C5877A p.A1959A GGATGCCGAAGTA . 247.0 12.0 146.0 2.0 . 167 . . . none . . PASS Atlas-SNP SMAD7 4092 hgsc.bcm.edu hg19 18 46447887 46447887 + Missense_Mutation SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . SMAD7 NM_005904 exon4 c.G1136A p.R379Q TTGGGCCGCTGCA . 66.0 25.0 91.0 0.0 . 22 . . . none . . PASS Atlas-SNP SALL3 27164 hgsc.bcm.edu hg19 18 76755171 76755171 + Missense_Mutation SNP G G C rs371088522 alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . SALL3 NM_171999 exon2 c.G3180C p.M1060I CACCATGATCAAA . 100.0 4.0 119.0 0.0 . 162 . . . alt . . PASS Atlas-SNP KCNN1 3780 hgsc.bcm.edu hg19 19 18100536 18100536 + Silent SNP C C A rs377567043 alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . KCNN1 NM_002248 exon8 c.C1182A p.A394A AAACGCCGCTGCT . 247.0 10.0 289.0 0.0 . 74 . . . alt . . PASS Atlas-SNP GATAD2A 54815 hgsc.bcm.edu hg19 19 19613195 19613195 + Missense_Mutation SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . GATAD2A NM_017660 exon11 c.C1631T p.T544M TGCACACGTTCAG . 93.0 36.0 182.0 0.0 . 81 . . . none . . PASS Atlas-SNP ZNF573 126231 hgsc.bcm.edu hg19 19 38230139 38230139 + Nonsense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ZNF573 NM_001172690 exon5 c.G1252T p.E418X CGCATTCCTTGCA . 300.0 132.0 275.0 0.0 . 63 . . . none . . PASS Atlas-SNP ZNF573 126231 hgsc.bcm.edu hg19 19 38230140 38230140 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ZNF573 NM_001172690 exon5 c.G1251T p.K417N GCATTCCTTGCAT . 296.0 132.0 274.0 0.0 . 63 . . . none . . PASS Atlas-SNP PRR12 57479 hgsc.bcm.edu hg19 19 50097991 50097991 + Silent SNP G G C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PRR12 NM_020719 exon4 c.G399C p.S133S CATCTCGGGTGCC . 30.0 15.0 72.0 0.0 . 157 . . . none . . PASS Atlas-SNP NSFL1C 55968 hgsc.bcm.edu hg19 20 1433207 1433207 + Missense_Mutation SNP C C A rs371393612 alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c NSFL1C,caecum,carcinoma,0,1 NSFL1C NM_016143 exon7 c.G716T p.R239L TCGTCCCGATGGT . 345.0 19.0 285.0 2.0 . 38 . . . alt . . PASS Atlas-SNP PCED1A 64773 hgsc.bcm.edu hg19 20 2819363 2819363 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c FAM113A,colon,carcinoma,0,1 . NM_022760 exon5 c.G473T p.R158L TTCTCCCGGTAGC . 236.0 10.0 322.0 0.0 . . . . . none . . PASS Atlas-SNP NF2 4771 hgsc.bcm.edu hg19 22 30051666 30051666 + Splice_Site SNP G G A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c NF2_ENST00000403999,NS,carcinoma,0,5 NF2 NM_016418 exon6 c.599+1G>A . AGCCAGGTGAGGC . 42.0 37.0 91.0 0.0 . 1312 . . . none . . PASS Atlas-SNP NXF3 56000 hgsc.bcm.edu hg19 X 102337711 102337711 + Missense_Mutation SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . NXF3 NM_022052 exon8 c.G757A p.V253I CATGGACGTCCAG . 91.0 87.0 155.0 1.0 . 81 . . . none . . PASS Atlas-SNP DOCK11 139818 hgsc.bcm.edu hg19 X 117731503 117731503 + Silent SNP A A T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . DOCK11 NM_144658 exon21 c.A2373T p.A791A TGATGCAGAATCA . 91.0 87.0 90.0 0.0 . 185 . . . none . . PASS Atlas-SNP KIAA1210 57481 hgsc.bcm.edu hg19 X 118223094 118223094 + Missense_Mutation SNP A A G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . KIAA1210 NM_020721 exon11 c.T2099C p.I700T AACTGGATATGAG . 58.0 50.0 57.0 0.0 . 171 . . . none . . PASS Atlas-SNP PLEKHG1 57480 hgsc.bcm.edu hg19 6 151152656 151152656 + Frame_Shift_Del DEL T T - novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PLEKHG1 NM_001029884 exon16 c.2408delC p.T803fs . . 127.0 60.0 158.0 0.0 . 97 . 0.472441 0 none . . PASS Atlas-INDEL BHMT 635 hgsc.bcm.edu hg19 5 78426827 78426828 + Frame_Shift_Ins INS - - A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . BHMT NM_001713 exon8 c.1109_1110insA p.P370fs . . 276.0 105.0 276.0 0.0 . 53 . 0.380435 0 none . . PASS Atlas-INDEL PSME4 23198 hgsc.bcm.edu hg19 2 54147352 54147352 + Frame_Shift_Del DEL C C - novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PSME4 NM_014614 exon19 c.2399delA p.D800fs . . 468.0 189.0 456.0 0.0 . 247 . 0.403846 0 none . . PASS Atlas-INDEL KRT76 51350 hgsc.bcm.edu hg19 12 53170736 53170736 + Frame_Shift_Del DEL T T - novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . KRT76 NM_015848 exon1 c.341delG p.S114fs . . 54.0 24.0 72.0 0.0 . 72 . 0.444444 0 none . . PASS Atlas-INDEL RGS7BP 401190 hgsc.bcm.edu hg19 5 63905047 63905047 + Frame_Shift_Del DEL T T - novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . RGS7BP NM_001029875 exon6 c.741delG p.R247fs . . 101.0 38.0 121.0 0.0 . 32 . 0.376238 0 none . . PASS Atlas-INDEL