Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
DDX20	11218	hgsc.bcm.edu	hg19	1	112303729	112303729	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	DDX20	NM_007204	exon6	c.T944G	p.F315C	TAGTCTTTTCTAA	.	96.0	39.0	97.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
DSTYK	25778	hgsc.bcm.edu	hg19	1	205132071	205132071	+	Silent	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	DSTYK	NM_199462	exon5	c.C1621T	p.L541L	CCCATAGCATCCT	.	154.0	67.0	147.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
ZFYVE20	64145	hgsc.bcm.edu	hg19	3	15116216	15116216	+	Silent	SNP	C	C	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	ZFYVE20	NM_022340	exon14	c.G1428T	p.A476A	GCGGCCCGCGGCC	.	132.0	6.0	158.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
CTDSPL	10217	hgsc.bcm.edu	hg19	3	38009318	38009318	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CTDSPL	NM_001008392	exon5	c.C371G	p.P124R	TCTAGCCTATTAG	.	54.0	13.0	63.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
FYCO1	79443	hgsc.bcm.edu	hg19	3	46008824	46008824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	FYCO1	NM_024513	exon8	c.G2002A	p.A668T	TGCTGGCCTGCTC	.	150.0	62.0	173.0	0.0	.	115	.	.	.	none	.	.	PASS	Atlas-SNP
FNIP2	57600	hgsc.bcm.edu	hg19	4	159825696	159825696	+	Silent	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	FNIP2	NM_020840	exon17	c.A3345G	p.X1115X	CTTATAAGCTAAA	.	121.0	46.0	172.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
RBM27	54439	hgsc.bcm.edu	hg19	5	145610424	145610424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	RBM27	NM_018989	exon6	c.C794A	p.S265Y	ATAGCTCTTCCAA	.	97.0	37.0	118.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
ARSI	340075	hgsc.bcm.edu	hg19	5	149677576	149677576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	ARSI	NM_001012301	exon2	c.C911T	p.S304L	CCCCCCGAGAAAG	.	71.0	28.0	94.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
NDUFAF4	29078	hgsc.bcm.edu	hg19	6	97344647	97344647	+	Silent	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	NDUFAF4	NM_014165	exon2	c.T213C	p.D71D	TTTGGAATCAACA	.	114.0	32.0	128.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
PABPC1	26986	hgsc.bcm.edu	hg19	8	101719226	101719226	+	Splice_Site	SNP	C	C	G	rs112580522	bycluster	TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	PABPC1,NS,carcinoma,0,1	PABPC1	NM_002568	exon11	c.1337-1G>C	.	GGAATGCTGCATT	.	54.0	6.0	63.0	1.0	.	76	.	.	.	weak	G|1.000;|0.000	1.000	PASS	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	133931710	133931710	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	TG	NM_003235	exon21	c.T4468G	p.C1490G	TTGGCCTGTGTCC	.	109.0	41.0	102.0	0.0	.	416	.	.	.	none	.	.	PASS	Atlas-SNP
ERLIN1	10613	hgsc.bcm.edu	hg19	10	101911987	101911987	+	Silent	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	.	NM_006459	exon11	c.T948C	p.Y316Y	ATCTGAATATTTC	.	132.0	50.0	127.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PPFIBP2	8495	hgsc.bcm.edu	hg19	11	7669667	7669667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	PPFIBP2	NM_003621	exon18	c.T1696C	p.W566R	TGTGCATGGCTGG	.	117.0	44.0	140.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
B3GNT6	192134	hgsc.bcm.edu	hg19	11	76751585	76751585	+	Splice_Site	SNP	T	T	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.,2	B3GNT6	NM_138706	exon3	c.988+1T>C	.	GCATCCTGGCCCT	.	5.0	3.0	0.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
KLRC4-KLRK1	0	hgsc.bcm.edu	hg19	12	10539567	10539567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	.	NM_001199805	exon8	c.G83A	p.S28N	AAATCACTCTTCT	.	56.0	18.0	70.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KRR1	11103	hgsc.bcm.edu	hg19	12	75895546	75895546	+	Silent	SNP	T	T	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	KRR1	NM_007043	exon9	c.A960G	p.A320A	AATAAATGCTTTG	.	73.0	21.0	87.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
ACACB	32	hgsc.bcm.edu	hg19	12	109692084	109692084	+	Silent	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	ACACB	NM_001093	exon43	c.C6111T	p.L2037L	ATTCCTCCCATCC	.	240.0	95.0	321.0	0.0	.	330	.	.	.	none	.	.	PASS	Atlas-SNP
CDAN1	146059	hgsc.bcm.edu	hg19	15	43024004	43024004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CDAN1	NM_138477	exon11	c.G1553A	p.G518D	CCAGCACCACCAG	.	94.0	26.0	80.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	hg19	19	2421953	2421953	+	Silent	SNP	G	G	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	TMPRSS9	NM_182973	exon13	c.G2154T	p.P718P	GAAGCCGGGCGTG	.	120.0	7.0	178.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
CST9L	128821	hgsc.bcm.edu	hg19	20	23548869	23548869	+	Silent	SNP	G	G	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CST9L	NM_080610	exon1	c.C219A	p.I73I	ATTCAAGATGTGC	.	66.0	19.0	81.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	hg19	18	43464597	43464598	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	EPG5	NM_020964	exon30	c.5289_5290insTT	p.F1763fs	.	.	121.0	39.0	143.0	0.0	.	199	.	0.322314	0	none	.	.	PASS	Atlas-INDEL
GNPTAB	79158	hgsc.bcm.edu	hg19	12	102159058	102159058	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	GNPTAB	NM_024312	exon13	c.1638delG	p.V546fs	.	.	100.0	33.0	101.0	0.0	.	120	.	0.33	0	none	.	.	PASS	Atlas-INDEL
LACTB	114294	hgsc.bcm.edu	hg19	15	63414861	63414861	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	LACTB	NM_032857	exon2	c.383delT	p.V128fs	.	.	106.0	35.0	107.0	0.0	.	29	.	0.330189	0	none	.	.	PASS	Atlas-INDEL