Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
JAK1	3716	hgsc.bcm.edu	hg19	1	65330541	65330541	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	JAK1	NM_002227	exon8	c.T1105A	p.F369I	CAGGGAAGTAAGA	.	68.0	22.0	74.0	0.0	.	209	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A17	388662	hgsc.bcm.edu	hg19	1	110738291	110738291	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SLC6A17	NM_001010898	exon10	c.T1576A	p.Y526N	GATGACTACTCGG	.	75.0	32.0	73.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
SIKE1	80143	hgsc.bcm.edu	hg19	1	115323170	115323170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SIKE1	NM_025073	exon1	c.G59T	p.R20L	TGCTCCCGTAGCC	.	57.0	5.0	53.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM46	80128	hgsc.bcm.edu	hg19	1	155148034	155148034	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	TRIM46	NM_025058	exon2	c.C236G	p.S79C	CCACCTCTCCTGC	.	97.0	19.0	118.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15691634	15691634	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	NBAS	NM_015909	exon6	c.T362C	p.I121T	CCAATAATGGATG	.	20.0	6.0	16.0	0.0	.	246	.	.	.	none	.	.	PASS	Atlas-SNP
SMEK2	57223	hgsc.bcm.edu	hg19	2	55812212	55812212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SMEK2	NM_001122964	exon7	c.T1208C	p.M403T	TCTTGCATTACAA	.	134.0	29.0	77.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
ADD2	119	hgsc.bcm.edu	hg19	2	70903901	70903901	+	Silent	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	ADD2_ENST00000430656,NS,carcinoma,0,1	ADD2	NM_001185055	exon12	c.C1668G	p.G556G	TTCCCCGCCAGTC	.	47.0	2.0	55.0	0.0	.	261	.	.	.	none	.	.	PASS	Atlas-SNP
GAD1	2571	hgsc.bcm.edu	hg19	2	171687570	171687570	+	Silent	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	GAD1	NM_000817	exon5	c.C415T	p.L139L	AAGGTGCTGGACT	.	128.0	63.0	137.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179419674	179419674	+	Silent	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	TTN	NM_001267550	exon331	c.T88512C	p.D29504D	AAGGCGATCGGCA	.	64.0	37.0	50.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179650834	179650834	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	TTN	NM_001267550	exon14	c.C2111G	p.T704R	ACAACTGTTGCTA	.	110.0	56.0	66.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	hg19	2	185801068	185801068	+	Silent	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ZNF804A	NM_194250	exon4	c.A945G	p.Q315Q	GTTTCAACTTCAG	.	67.0	41.0	47.0	0.0	.	322	.	.	.	none	.	.	PASS	Atlas-SNP
PODXL2	50512	hgsc.bcm.edu	hg19	3	127379599	127379599	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	PODXL2	NM_015720	exon3	c.T728A	p.L243X	CCAGCTTGCTGCT	.	88.0	18.0	95.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
XRN1	54464	hgsc.bcm.edu	hg19	3	142123863	142123863	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	XRN1	NM_001042604	exon16	c.G1769C	p.R590T	CTTTTCCTCTCTT	.	82.0	35.0	76.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48578146	48578146	+	Silent	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FRYL	NM_015030	exon24	c.A2622G	p.A874A	TGTTGCTGCACTG	.	97.0	29.0	152.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48578148	48578148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FRYL	NM_015030	exon24	c.G2620A	p.A874T	TTGCTGCACTGCA	.	97.0	27.0	148.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
SHROOM3	57619	hgsc.bcm.edu	hg19	4	77675996	77675996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SHROOM3	NM_020859	exon7	c.C4360A	p.L1454M	GCAAACCTGAAGC	.	57.0	21.0	73.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
SLC39A8	64116	hgsc.bcm.edu	hg19	4	103225511	103225511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SLC39A8	NM_022154	exon5	c.A803G	p.H268R	TGGATATGTCCAT	.	68.0	23.0	68.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
CTNNA1	1495	hgsc.bcm.edu	hg19	5	138266342	138266342	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CTNNA1	NM_001903	exon15	c.C2191T	p.R731X	TTTACCCGGTGAG	.	195.0	75.0	191.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
FAM71B	153745	hgsc.bcm.edu	hg19	5	156590094	156590094	+	Silent	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FAM71B	NM_130899	exon2	c.A1182T	p.A394A	TCCCACTGCTGGT	.	92.0	36.0	103.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
FTSJD2	23070	hgsc.bcm.edu	hg19	6	37442389	37442389	+	Silent	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FTSJD2	NM_015050	exon18	c.A1911G	p.L637L	TCTGCTATCTGTG	.	101.0	31.0	109.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	hg19	6	45390445	45390445	+	Silent	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	RUNX2_ENST00000352853,lower_third,carcinoma,0,2	RUNX2	NM_001024630	exon3	c.A174G	p.Q58Q	GCAGCAACAGCAG	.	85.0	4.0	93.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY1	107	hgsc.bcm.edu	hg19	7	45747951	45747951	+	Silent	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ADCY1	NM_021116	exon18	c.T2820C	p.A940A	CTAGGCTAAGAAG	.	104.0	56.0	83.0	0.0	.	187	.	.	.	none	.	.	PASS	Atlas-SNP
MLL5	55904	hgsc.bcm.edu	hg19	7	104717426	104717426	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MLL5	NM_018682	exon9	c.T785G	p.I262S	CAGAGATTGATCC	.	59.0	25.0	41.0	0.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
SMO	6608	hgsc.bcm.edu	hg19	7	128845571	128845571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	SMO,NS,malignant_melanoma,-1,2	SMO	NM_005631	exon4	c.C868A	p.R290S	GGTGCCCGCCGAG	.	115.0	5.0	90.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
COL14A1	7373	hgsc.bcm.edu	hg19	8	121237425	121237425	+	Silent	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	COL14A1	NM_021110	exon15	c.A1836T	p.S612S	ACAGTCAGAGCCT	.	78.0	20.0	99.0	0.0	.	292	.	.	.	none	.	.	PASS	Atlas-SNP
CNTLN	54875	hgsc.bcm.edu	hg19	9	17332674	17332674	+	Silent	SNP	G	G	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CNTLN	NM_017738	exon10	c.G1590A	p.K530K	ACAGAAGCTGAGA	.	71.0	17.0	69.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
ACO1	48	hgsc.bcm.edu	hg19	9	32448942	32448942	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ACO1	NM_002197	exon20	c.A2419T	p.N807Y	CGCAGTAACCTGG	.	74.0	29.0	93.0	0.0	.	149	.	.	.	none	.	.	PASS	Atlas-SNP
HNRNPK	3190	hgsc.bcm.edu	hg19	9	86585225	86585225	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	HNRNPK	NM_031262	exon16	c.A1213T	p.K405X	CACCTTTGCCAAT	.	71.0	24.0	60.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS13	11093	hgsc.bcm.edu	hg19	9	136305491	136305491	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ADAMTS13	NM_139027	exon16	c.G1813C	p.V605L	TATGTCGTGGCTG	.	77.0	27.0	70.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
JMJD1C	221037	hgsc.bcm.edu	hg19	10	64968980	64968980	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	JMJD1C	NM_032776	exon9	c.T2710A	p.W904R	GTAGCCAAGGACT	.	46.0	19.0	57.0	0.0	.	347	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC4C	57689	hgsc.bcm.edu	hg19	11	40136275	40136275	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	LRRC4C	NM_001258419	exon7	c.T1568G	p.M523R	GTCTTCATGACCT	.	109.0	29.0	129.0	0.0	.	190	.	.	.	none	.	.	PASS	Atlas-SNP
ACCS	84680	hgsc.bcm.edu	hg19	11	44105011	44105011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ACCS	NM_032592	exon14	c.T1292C	p.L431P	TGCTGCTCTGGCG	.	68.0	13.0	62.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49434235	49434235	+	Missense_Mutation	SNP	C	C	T	rs375114492		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MLL2	NM_003482	exon31	c.G7318A	p.V2440I	GGGTAACGGGTGA	.	101.0	35.0	96.0	0.0	.	1173	.	.	.	weak	.	.	PASS	Atlas-SNP
PTPN11	5781	hgsc.bcm.edu	hg19	12	112892458	112892458	+	Silent	SNP	T	T	C	rs78376169	bycluster	TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	PTPN11,NS,carcinoma,0,2	PTPN11	NM_080601	exon5	c.T616C	p.L206L	GAAACATTGGGTA	.	46.0	3.0	47.0	0.0	.	623	.	.	.	weak	.	.	PASS	Atlas-SNP
HNF1A	6927	hgsc.bcm.edu	hg19	12	121437343	121437343	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	HNF1A	NM_000545	exon9	c.C1681T	p.Q561X	GCATCTCAGGCCA	.	37.0	10.0	42.0	0.0	.	302	.	.	.	none	.	.	PASS	Atlas-SNP
EPSTI1	94240	hgsc.bcm.edu	hg19	13	43463356	43463356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	EPSTI1	NM_001002264	exon12	c.G971A	p.R324K	AGGTGCCTCGAAA	.	27.0	16.0	47.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
EPSTI1	94240	hgsc.bcm.edu	hg19	13	43463357	43463357	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	EPSTI1	NM_001002264	exon12	c.A970T	p.R324W	GGTGCCTCGAAAA	.	27.0	16.0	47.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC70	83446	hgsc.bcm.edu	hg19	13	52439743	52439743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CCDC70	NM_031290	exon2	c.C229T	p.H77Y	AAGATCCATGCTT	.	127.0	59.0	95.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
PCDH8	5100	hgsc.bcm.edu	hg19	13	53418949	53418949	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	PCDH8	NM_002590	exon3	c.T2959A	p.F987I	TACAGAAGGTTGA	.	112.0	48.0	122.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
ITGA11	22801	hgsc.bcm.edu	hg19	15	68631978	68631978	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ITGA11	NM_001004439	exon11	c.G1136C	p.G379A	AGAACCCCATCCT	.	84.0	19.0	100.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
SCAPER	49855	hgsc.bcm.edu	hg19	15	76673781	76673781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SCAPER	NM_020843	exon27	c.G3643A	p.V1215M	TGGCCACTTGGAT	.	50.0	11.0	59.0	0.0	.	160	.	.	.	none	.	.	PASS	Atlas-SNP
MYH13	8735	hgsc.bcm.edu	hg19	17	10227379	10227379	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MYH13	NM_003802	exon23	c.T2894A	p.L965X	TTCGTCAAGGTCA	.	105.0	68.0	70.0	0.0	.	533	.	.	.	none	.	.	PASS	Atlas-SNP
MYH8	4626	hgsc.bcm.edu	hg19	17	10309460	10309460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MYH8	NM_002472	exon21	c.A2330G	p.E777G	ATTTCTTCCAGAA	.	101.0	54.0	90.0	0.0	.	346	.	.	.	none	.	.	PASS	Atlas-SNP
STAC2	342667	hgsc.bcm.edu	hg19	17	37368584	37368584	+	Silent	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	STAC2	NM_198993	exon11	c.G1197A	p.K399K	GCCCCGCTTCTTG	.	60.0	14.0	35.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
CAPS	828	hgsc.bcm.edu	hg19	19	5914495	5914495	+	Silent	SNP	G	G	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CAPS	NM_080590	exon2	c.G78T	p.L26L	GGGCCTGGCCAGG	.	57.0	22.0	72.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
C3	718	hgsc.bcm.edu	hg19	19	6709834	6709834	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C3,NS,carcinoma,0,1	C3	NM_000064	exon14	c.A1706C	p.Q569P	TCTGACTGGCCGC	.	72.0	18.0	101.0	1.0	.	192	.	.	.	none	.	.	PASS	Atlas-SNP
FCER2	2208	hgsc.bcm.edu	hg19	19	7755293	7755293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FCER2	NM_002002	exon9	c.A620T	p.Q207L	CCCACCTGCTCCT	.	92.0	27.0	105.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11113781	11113781	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SMARCA4	NM_003072	exon12	c.G1889C	p.G630A	TCACAGGCACAGA	.	111.0	28.0	148.0	0.0	.	502	.	.	.	none	.	.	PASS	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38990577	38990577	+	Missense_Mutation	SNP	G	G	A	rs201584482		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	RYR1	NM_001042723	exon45	c.G7244A	p.R2415Q	AAAACCGGGTGCA	.	105.0	35.0	109.0	0.0	.	708	.	.	.	weak	.	.	PASS	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50764757	50764757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MYH14	NM_001145809	exon21	c.A2450G	p.N817S	ACCCCAACCTCTA	.	74.0	20.0	85.0	0.0	.	261	.	.	.	none	.	.	PASS	Atlas-SNP
CEP250	11190	hgsc.bcm.edu	hg19	20	34092361	34092361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CEP250	NM_007186	exon30	c.A6164G	p.Q2055R	ATCAGCAGGAACG	.	52.0	17.0	29.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
ADNP	23394	hgsc.bcm.edu	hg19	20	49510230	49510230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ADNP	NM_015339	exon5	c.T1021A	p.Y341N	CACTGTAACCCTG	.	98.0	31.0	114.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
ADARB1	104	hgsc.bcm.edu	hg19	21	46596347	46596347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	ADARB1_ENST00000389863,colon,carcinoma,0,4	ADARB1	NM_001160230	exon4	c.G731A	p.R244H	AACTGCGCCCAGG	.	122.0	44.0	117.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
PNCK	139728	hgsc.bcm.edu	hg19	X	152937464	152937464	+	Silent	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	PNCK	NM_001039582	exon5	c.T534A	p.G178G	CTCGCCACCCGTC	.	21.0	10.0	30.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12756	12756	+	Silent	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	.	ENST00000361567	exon1	c.G420C	p.L140L	CCAACTGTTCATC	.	7.0	7.0	1.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
F5	2153	hgsc.bcm.edu	hg19	1	169510915	169510916	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	F5	NM_000130	exon13	c.3413_3414insAA	p.M1138fs	.	.	276.0	80.0	289.0	0.0	.	301	.	0.289855	0	none	.	.	PASS	Atlas-INDEL
GREB1	9687	hgsc.bcm.edu	hg19	2	11706688	11706688	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	GREB1_ENST00000381486,NS,carcinoma,+1,2	GREB1	NM_148903	exon4	c.359delT	p.V120fs	.	.	135.0	41.0	101.0	0.0	.	308	.	0.303704	0	none	.	.	PASS	Atlas-INDEL
RC3H1	149041	hgsc.bcm.edu	hg19	1	173916659	173916660	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	RC3H1	NM_172071	exon14	c.2585_2586del	p.862_862del	.	.	130.0	29.0	153.0	0.0	.	110	.	0.223077	0	none	.	.	PASS	Atlas-INDEL
RPL10A	4736	hgsc.bcm.edu	hg19	6	35437266	35437267	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	RPL10A	NM_007104	exon4	c.270_271insA	p.L90fs	.	.	44.0	12.0	52.0	0.0	.	13	.	0.272727	0	none	.	.	PASS	Atlas-INDEL