Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TTN	7273	hgsc.bcm.edu	hg19	2	179612896	179612896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	TTN	NM_133379	exon46	c.A14231G	p.E4744G	GTTTCTTCTATAT	.	98.0	39.0	141.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
QARS	5859	hgsc.bcm.edu	hg19	3	49137278	49137278	+	Missense_Mutation	SNP	T	T	C	rs143462532		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	QARS	NM_005051	exon15	c.A1304G	p.Y435C	GTGGGATAGATGC	.	63.0	22.0	77.0	0.0	.	55	.	.	.	weak	T|1.000;C|0.000	0.000	PASS	Atlas-SNP
CLDN11	5010	hgsc.bcm.edu	hg19	3	170150353	170150353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	CLDN11,NS,carcinoma,0,1	CLDN11	NM_005602	exon3	c.G433A	p.A145T	GTGTGCGCCCACC	.	88.0	36.0	106.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHB2	56133	hgsc.bcm.edu	hg19	5	140476411	140476411	+	Silent	SNP	A	A	C	novel		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	PCDHB2,NS,carcinoma,0,1	PCDHB2	NM_018936	exon1	c.A2037C	p.A679A	GGCGGCACCGGCC	.	131.0	7.0	123.0	2.0	.	163	.	.	.	none	.	.	PASS	Atlas-SNP
KIF4B	285643	hgsc.bcm.edu	hg19	5	154395607	154395607	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	KIF4B	NM_001099293	exon1	c.G2188T	p.E730X	CGGAAAGAGACTC	.	531.0	104.0	628.0	0.0	.	307	.	.	.	none	.	.	PASS	Atlas-SNP
WNT2	7472	hgsc.bcm.edu	hg19	7	116937828	116937828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	WNT2	NM_003391	exon4	c.G691A	p.G231S	AATCGCCCGTTTT	.	86.0	41.0	98.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
INCENP	3619	hgsc.bcm.edu	hg19	11	61914249	61914249	+	Silent	SNP	G	G	C	rs113959967		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	INCENP	NM_001040694	exon15	c.G2079C	p.R693R	GCGGCGGGAGCAG	.	119.0	44.0	132.0	0.0	.	122	.	.	.	weak	G|0.500;C|0.500	0.500	PASS	Atlas-SNP
INCENP	3619	hgsc.bcm.edu	hg19	11	61914279	61914279	+	Silent	SNP	C	C	G	rs371735595	alternate_allele	TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	INCENP	NM_001040694	exon15	c.C2109G	p.R703R	GCGGCGCGAGCAG	.	84.0	19.0	118.0	0.0	.	122	.	.	.	alt	.	.	PASS	Atlas-SNP
OR11H2	79334	hgsc.bcm.edu	hg19	14	20181514	20181514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	.	NM_001197287	exon2	c.A562G	p.I188V	CAATAATGTTTGG	.	203.0	116.0	353.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SAV1	60485	hgsc.bcm.edu	hg19	14	51101991	51101991	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	SAV1	NM_021818	exon5	c.T1062A	p.Y354X	TGCTTCATACATT	.	78.0	56.0	129.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF19	7567	hgsc.bcm.edu	hg19	16	71509777	71509777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	ZNF19	NM_006961	exon6	c.G673A	p.A225T	TAAAGGCTCGCCC	.	137.0	45.0	154.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
RFFL	117584	hgsc.bcm.edu	hg19	17	33348798	33348798	+	Silent	SNP	C	C	T	novel		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	RFFL	NM_001017368	exon3	c.G183A	p.Q61Q	GCAGGTCTGCTGC	.	122.0	50.0	167.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9008207	9008207	+	Silent	SNP	G	G	A	novel		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	MUC16	NM_024690	exon41	c.C39345T	p.P13115P	GGTGTAGGGGCCC	.	122.0	9.0	133.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
DNM2	1785	hgsc.bcm.edu	hg19	19	10886526	10886526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	DNM2	NM_001005361	exon4	c.A533G	p.N178S	CCGCCAACATGGA	.	77.0	37.0	87.0	0.0	.	175	.	.	.	none	.	.	PASS	Atlas-SNP
CYP2A7	1549	hgsc.bcm.edu	hg19	19	41386516	41386516	+	Missense_Mutation	SNP	C	C	A	rs376282662	alternate_allele	TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	CYP2A7	NM_000764	exon3	c.G361T	p.G121W	GCTCCCCGTTGCT	.	144.0	8.0	147.0	0.0	.	71	.	.	.	alt	.	.	PASS	Atlas-SNP
BPIFB2	80341	hgsc.bcm.edu	hg19	20	31608183	31608183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	.	NM_025227	exon12	c.G1130A	p.G377E	TTCAGGGGACCAC	.	115.0	53.0	102.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
AURKA	6790	hgsc.bcm.edu	hg19	20	54963211	54963211	+	Splice_Site	SNP	C	C	G	novel		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	AURKA,NS,carcinoma,0,1	AURKA	NM_198434	exon4	c.42+1G>C	.	AATTTACCTTAAC	.	125.0	8.0	123.0	1.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
ND3	0	hgsc.bcm.edu	hg19	MT	10197	10197	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-F9-A7Q0-01A-11D-A35Z-10	TCGA-F9-A7Q0-10B-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8a7f344-08bd-4b20-bbdd-94915425f00f	dfc4913f-381a-4897-828e-6f8666d652ef	.	.	ENST00000361227	exon1	c.G139C	p.A47P	TCCCCCGCCCGCG	.	24.0	19.0	30.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP