Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
MCOLN3	55283	hgsc.bcm.edu	hg19	1	85491894	85491894	+	Silent	SNP	G	G	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	MCOLN3	NM_018298	exon8	c.C906G	p.L302L	AATGCAGAGGATT	.	116.0	44.0	132.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP30	257106	hgsc.bcm.edu	hg19	1	161029441	161029441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ARHGAP30	NM_001025598	exon2	c.C163A	p.R55S	AGAGGCGGTAGAT	.	140.0	6.0	138.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
STON1	11037	hgsc.bcm.edu	hg19	2	48818889	48818889	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	STON1	NM_001198595	exon4	c.C2028A	p.S676S	GTTTTCCGTGCCT	.	129.0	7.0	138.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
SULT1C4	27233	hgsc.bcm.edu	hg19	2	108994906	108994906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SULT1C4	NM_006588	exon1	c.T113C	p.I38T	ATAAGATCTGGAA	.	315.0	134.0	289.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	hg19	3	78683096	78683096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ROBO1	NM_002941	exon24	c.G3470T	p.S1157I	GTACTACTGCCCC	.	155.0	38.0	128.0	0.0	.	833	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	hg19	3	113376148	113376148	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	KIAA2018	NM_001009899	exon7	c.A4381C	p.K1461Q	GCTGCTTTATGTA	.	105.0	7.0	52.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY5	111	hgsc.bcm.edu	hg19	3	123047579	123047579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ADCY5	NM_183357	exon6	c.G1717T	p.G573C	GGACACCGCAGTG	.	189.0	11.0	151.0	0.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
SSR3	6747	hgsc.bcm.edu	hg19	3	156266708	156266708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SSR3	NM_007107	exon3	c.G345T	p.K115N	TTTCTCCTTCCGA	.	116.0	26.0	77.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
HELQ	113510	hgsc.bcm.edu	hg19	4	84342848	84342848	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	HELQ	NM_133636	exon15	c.T2817C	p.F939F	AAGAACAAAAGAC	.	61.0	26.0	58.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
BHMT	635	hgsc.bcm.edu	hg19	5	78415091	78415091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	BHMT	NM_001713	exon3	c.T176C	p.L59P	GCCAGCTTCATCG	.	112.0	42.0	98.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
PGGT1B	5229	hgsc.bcm.edu	hg19	5	114573574	114573574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	PGGT1B	NM_005023	exon4	c.C460T	p.L154F	GCTGAAGGGCTCT	.	188.0	79.0	161.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
WDR55	54853	hgsc.bcm.edu	hg19	5	140049032	140049032	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	WDR55	NM_017706	exon7	c.T945C	p.H315H	TGGCCATGACCAG	.	45.0	18.0	36.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGC3	5098	hgsc.bcm.edu	hg19	5	140856169	140856169	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	PCDHGC3	NM_032402	exon1	c.C486A	p.P162P	CGATCCCGATGTG	.	101.0	7.0	125.0	0.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
REV3L	5980	hgsc.bcm.edu	hg19	6	111632330	111632330	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	REV3L	NM_002912	exon29	c.T8737A	p.Y2913N	CTCTGTATTCCTT	.	267.0	91.0	258.0	0.0	.	386	.	.	.	none	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116423474	116423474	+	Missense_Mutation	SNP	T	T	C	rs121913245		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	MET,rectum,carcinoma,+1,5	MET	NM_001127500	exon19	c.T3803C	p.M1268T	AGTGGATGGCTTT	.	61.0	25.0	61.0	0.0	.	412	.	.	.	weak	.	.	PASS	Atlas-SNP
PRKAG2	51422	hgsc.bcm.edu	hg19	7	151372604	151372604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	PRKAG2	NM_016203	exon4	c.T586C	p.S196P	GGGGGGAAGACGA	.	123.0	5.0	125.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
TOPORS	10210	hgsc.bcm.edu	hg19	9	32543270	32543270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	TOPORS	NM_005802	exon3	c.A1253G	p.D418G	GTTTCATCATCCC	.	140.0	59.0	156.0	0.0	.	127	.	.	.	none	.	.	PASS	Atlas-SNP
SPTAN1	6709	hgsc.bcm.edu	hg19	9	131361264	131361264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SPTAN1	NM_003127	exon26	c.G3542T	p.R1181M	TGCCCAGGGTAAG	.	129.0	57.0	131.0	0.0	.	266	.	.	.	none	.	.	PASS	Atlas-SNP
CHD4	1108	hgsc.bcm.edu	hg19	12	6711561	6711561	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	CHD4	NM_001273	exon3	c.G203C	p.S68T	CGCTTGCTCTTAG	.	417.0	127.0	520.0	0.0	.	539	.	.	.	none	.	.	PASS	Atlas-SNP
TUBA3C	7278	hgsc.bcm.edu	hg19	13	19751148	19751148	+	Silent	SNP	C	C	G	rs1052344		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	TUBA3C,NS,carcinoma,0,2	TUBA3C	NM_006001	exon4	c.G975C	p.P325P	ATCTTTCGGGACC	.	138.0	6.0	180.0	2.0	.	166	.	.	.	weak	C|1.000;|0.000	.	PASS	Atlas-SNP
LNX2	222484	hgsc.bcm.edu	hg19	13	28143269	28143269	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	LNX2	NM_153371	exon3	c.C552T	p.G184G	CACTGCGCCTGTC	.	346.0	119.0	339.0	1.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL1	57626	hgsc.bcm.edu	hg19	13	70549759	70549759	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	KLHL1	NM_020866	exon2	c.G673C	p.A225P	TATGTGCAGGTAT	.	157.0	50.0	136.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
UBE3A	7337	hgsc.bcm.edu	hg19	15	25616649	25616649	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	UBE3A	NM_000462	exon7	c.A681T	p.L227F	AGGGCCTAATTTT	.	231.0	80.0	226.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC78	124093	hgsc.bcm.edu	hg19	16	775528	775528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	CCDC78	NM_001031737	exon4	c.C320A	p.T107N	TGGCTGGTGCCAT	.	58.0	20.0	47.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
SNX29	92017	hgsc.bcm.edu	hg19	16	12618621	12618621	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SNX29	NM_032167	exon20	c.C2241T	p.N747N	CATGAACAAAGTC	.	110.0	40.0	128.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
FAM83G	644815	hgsc.bcm.edu	hg19	17	18881233	18881233	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	FAM83G	NM_001039999	exon5	c.A1746T	p.E582D	ATCATCTTCTTCT	.	131.0	44.0	156.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
CDK5R1	8851	hgsc.bcm.edu	hg19	17	30815101	30815101	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	CDK5R1	NM_003885	exon2	c.C463T	p.L155L	CGCTGCCTGGGTG	.	68.0	26.0	85.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF700	90592	hgsc.bcm.edu	hg19	19	12060395	12060395	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ZNF700	NM_001271848	exon4	c.C1565G	p.S522C	TTTATTCTGCCAA	.	66.0	33.0	88.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
CHERP	10523	hgsc.bcm.edu	hg19	19	16640580	16640580	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	CHERP,NS,carcinoma,0,2	CHERP	NM_006387	exon8	c.A1008G	p.Q336Q	CTGCTGTTGCTGC	.	49.0	4.0	46.0	2.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
IL4I1	259307	hgsc.bcm.edu	hg19	19	50393785	50393785	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	IL4I1	NM_172374	exon10	c.G912A	p.L304L	GTTCAACAGCACA	.	50.0	21.0	42.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF615	284370	hgsc.bcm.edu	hg19	19	52496292	52496292	+	Silent	SNP	C	C	A	rs146634089	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	ZNF615,colon,carcinoma,0,2	ZNF615	NM_001199324	exon7	c.G2070T	p.P690P	TTTGTACGGTTTC	.	201.0	83.0	205.0	2.0	.	111	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
TRIM28	10155	hgsc.bcm.edu	hg19	19	59057198	59057198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	TRIM28	NM_005762	exon3	c.G521A	p.C174Y	CTCTGTGTGAGAC	.	94.0	37.0	129.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP26-1	388818	hgsc.bcm.edu	hg19	21	31692296	31692296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	KRTAP26-1,colon,carcinoma,0,1	KRTAP26-1	NM_203405	exon1	c.C58T	p.R20C	TATGGCGGGAGGT	.	63.0	5.0	77.0	1.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
SPRED2	200734	hgsc.bcm.edu	hg19	2	65561771	65561771	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SPRED2	NM_181784	exon3	c.342delA	p.G114fs	.	.	192.0	68.0	198.0	0.0	.	70	.	0.354167	0	none	.	.	PASS	Atlas-INDEL
LRP2	4036	hgsc.bcm.edu	hg19	2	170145584	170145584	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	LRP2	NM_004525	exon9	c.995delG	p.C332fs	.	.	142.0	41.0	136.0	0.0	.	751	.	0.288732	0	none	.	.	PASS	Atlas-INDEL
NFE2L3	9603	hgsc.bcm.edu	hg19	7	26223344	26223347	+	Frame_Shift_Del	DEL	TTCT	TTCT	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	TTCT	TTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	NFE2L3	NM_004289	exon3	c.773_776del	p.258_259del	.	.	129.0	39.0	110.0	0.0	.	77	.	0.302326	0	none	.	.	PASS	Atlas-INDEL