Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm SLC2A5 6518 hgsc.bcm.edu hg19 1 9097752 9097752 + Missense_Mutation SNP T T C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . SLC2A5 NM_003039 exon12 c.A1399G p.T467A TGAACGTCTTGGC . 181.0 30.0 209.0 0.0 . 77 . . . none . . PASS Atlas-SNP ALPL 249 hgsc.bcm.edu hg19 1 21902288 21902288 + Missense_Mutation SNP G G A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ALPL NM_000478 exon10 c.G1060A p.E354K GCGGTGGAGATGG . 186.0 25.0 278.0 0.0 . 50 . . . none . . PASS Atlas-SNP WASF2 10163 hgsc.bcm.edu hg19 1 27739179 27739179 + Silent SNP A A G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . WASF2 NM_006990 exon7 c.T711C p.C237C TTCAACACAGCCA . 128.0 22.0 147.0 0.0 . 41 . . . none . . PASS Atlas-SNP TESK2 10420 hgsc.bcm.edu hg19 1 45813333 45813333 + Missense_Mutation SNP G G A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . TESK2 NM_007170 exon7 c.C656T p.S219F AATGGGGAACCCA . 175.0 38.0 217.0 0.0 . 60 . . . none . . PASS Atlas-SNP TMEM69 51249 hgsc.bcm.edu hg19 1 46159260 46159260 + Missense_Mutation SNP A A G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . TMEM69 NM_016486 exon3 c.A427G p.I143V GGTGGGATCAGAT . 176.0 31.0 196.0 0.0 . 20 . . . none . . PASS Atlas-SNP ZFYVE9 9372 hgsc.bcm.edu hg19 1 52704507 52704507 + Missense_Mutation SNP A A G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ZFYVE9 NM_007323 exon4 c.A1418G p.Y473C CAAATTATCTATC . 176.0 32.0 173.0 0.0 . 131 . . . none . . PASS Atlas-SNP ZYG11B 79699 hgsc.bcm.edu hg19 1 53262039 53262039 + Silent SNP T T C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ZYG11B NM_024646 exon7 c.T1410C p.A470A AGTTGCTATCATT . 71.0 10.0 69.0 0.0 . 61 . . . none . . PASS Atlas-SNP ODF2L 57489 hgsc.bcm.edu hg19 1 86851227 86851227 + Missense_Mutation SNP G G A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ODF2L NM_001184766 exon3 c.C160T p.L54F CCTTAAGTGTTGC . 53.0 12.0 43.0 0.0 . 53 . . . none . . PASS Atlas-SNP ARHGAP29 9411 hgsc.bcm.edu hg19 1 94639942 94639942 + Missense_Mutation SNP A A G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ARHGAP29 NM_004815 exon23 c.T3269C p.L1090P GCAGTTAGGCTGT . 341.0 56.0 428.0 0.0 . 132 . . . none . . PASS Atlas-SNP GSTM1 2944 hgsc.bcm.edu hg19 1 110233169 110233169 + Missense_Mutation SNP T T G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . GSTM1 NM_000561 exon7 c.T550G p.F184V AAGGACTTCATCT . 240.0 72.0 317.0 0.0 . 13 . . . none . . PASS Atlas-SNP ATP1A2 477 hgsc.bcm.edu hg19 1 160105252 160105252 + Missense_Mutation SNP G G A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ATP1A2 NM_000702 exon16 c.G2144A p.G715E GTGACGGGGTGAA . 73.0 12.0 110.0 0.0 . 167 . . . none . . PASS Atlas-SNP NME7 29922 hgsc.bcm.edu hg19 1 169102046 169102046 + Missense_Mutation SNP A A G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . NME7 NM_013330 exon12 c.T1108C p.F370L TGAAGAAGTATTG . 66.0 7.0 71.0 0.0 . 34 . . . none . . PASS Atlas-SNP PPFIA4 8497 hgsc.bcm.edu hg19 1 203036824 203036824 + Missense_Mutation SNP A A G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . PPFIA4 NM_015053 exon13 c.A1534G p.T512A TGCAGAACCAGTC . 67.0 8.0 94.0 0.0 . 139 . . . none . . PASS Atlas-SNP SDE2 163859 hgsc.bcm.edu hg19 1 226175877 226175877 + Missense_Mutation SNP G G T novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . . NM_152608 exon6 c.C854A p.P285Q GTCACCGGGATCT . 236.0 10.0 311.0 0.0 . . . . . none . . PASS Atlas-SNP GMPPA 29926 hgsc.bcm.edu hg19 2 220370077 220370077 + Missense_Mutation SNP T T C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . GMPPA NM_205847 exon8 c.T748C p.S250P ATCAAGTCCGCAG . 120.0 22.0 142.0 0.0 . 50 . . . none . . PASS Atlas-SNP CAMK1 8536 hgsc.bcm.edu hg19 3 9801228 9801228 + Missense_Mutation SNP T T C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . CAMK1 NM_003656 exon10 c.A856G p.I286V GGTGGATATTCTT . 204.0 42.0 250.0 0.0 . 32 . . . none . . PASS Atlas-SNP GPD1L 23171 hgsc.bcm.edu hg19 3 32169609 32169609 + Missense_Mutation SNP A A C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . GPD1L NM_015141 exon2 c.A89C p.K30T TCAAGAAACTTCA . 49.0 9.0 50.0 0.0 . 25 . . . none . . PASS Atlas-SNP NXPE3 91775 hgsc.bcm.edu hg19 3 101540473 101540473 + Missense_Mutation SNP C C G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . . NM_145037 exon8 c.C1355G p.P452R CCTTCCCTTTGGA . 64.0 11.0 85.0 0.0 . . . . . none . . PASS Atlas-SNP POLQ 10721 hgsc.bcm.edu hg19 3 121260288 121260288 + Missense_Mutation SNP G G A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . POLQ NM_199420 exon3 c.C382T p.L128F AAATAAGTAATTC . 448.0 78.0 380.0 0.0 . 273 . . . none . . PASS Atlas-SNP ATR 545 hgsc.bcm.edu hg19 3 142284995 142284995 + Missense_Mutation SNP C C T rs200407265 by1000genomes;alternate_allele TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ATR NM_001184 exon3 c.G260A p.S87N CTTCCACTCACAT . 111.0 23.0 98.0 0.0 . 285 . . . alt C|1.000;A|0.000 . PASS Atlas-SNP LAMP3 27074 hgsc.bcm.edu hg19 3 182870222 182870222 + Silent SNP G G T novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . LAMP3 NM_014398 exon3 c.C829A p.R277R ATTTTCGGGTGCC . 415.0 17.0 384.0 0.0 . 48 . . . none . . PASS Atlas-SNP N4BP2 55728 hgsc.bcm.edu hg19 4 40122682 40122682 + Missense_Mutation SNP C C G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . N4BP2 NM_018177 exon9 c.C2951G p.P984R GTGCACCAACTGT . 58.0 9.0 70.0 0.0 . 166 . . . none . . PASS Atlas-SNP SCD5 79966 hgsc.bcm.edu hg19 4 83557889 83557889 + Silent SNP G G C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . SCD5 NM_001037582 exon4 c.C657G p.S219S GAAGTAGGAATTC . 45.0 9.0 85.0 0.0 . 58 . . . none . . PASS Atlas-SNP KIAA0922 23240 hgsc.bcm.edu hg19 4 154557454 154557454 + Missense_Mutation SNP C C T novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . KIAA0922 NM_001131007 exon35 c.C4559T p.P1520L TTCAGCCCTACCT . 208.0 24.0 230.0 0.0 . 214 . . . none . . PASS Atlas-SNP FNIP2 57600 hgsc.bcm.edu hg19 4 159756556 159756556 + Splice_Site SNP G G A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . FNIP2 NM_020840 exon7 c.656-1G>A . ATCTTAGCACACA . 298.0 56.0 305.0 0.0 . 90 . . . none . . PASS Atlas-SNP LIFR 3977 hgsc.bcm.edu hg19 5 38489203 38489203 + Missense_Mutation SNP G G A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . LIFR NM_002310 exon16 c.C2312T p.S771F ATCTTAGATGTGT . 109.0 26.0 96.0 0.0 . 348 . . . none . . PASS Atlas-SNP PCDHGC4 56098 hgsc.bcm.edu hg19 5 140864817 140864817 + Missense_Mutation SNP A A G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . PCDHGC4 NM_018928 exon1 c.A77G p.Y26C TGGGTTACGTTTG . 86.0 15.0 117.0 0.0 . 91 . . . none . . PASS Atlas-SNP OR2J3 442186 hgsc.bcm.edu hg19 6 29079815 29079815 + Missense_Mutation SNP A A G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . OR2J3 NM_001005216 exon1 c.A148G p.I50V ATCATCATCCTGT . 269.0 53.0 337.0 0.0 . 53 . . . none . . PASS Atlas-SNP ZBTB22 9278 hgsc.bcm.edu hg19 6 33284668 33284668 + Missense_Mutation SNP C C T novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ZBTB22 NM_001145338 exon2 c.G26A p.S9N GCCCCACTGGGAG . 47.0 10.0 82.0 0.0 . 48 . . . none . . PASS Atlas-SNP UBR2 23304 hgsc.bcm.edu hg19 6 42559909 42559909 + Missense_Mutation SNP C C G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . UBR2 NM_001184801 exon3 c.C359G p.T120S ATCCAACTTGTGT . 78.0 11.0 89.0 0.0 . 134 . . . none . . PASS Atlas-SNP SLC35B2 347734 hgsc.bcm.edu hg19 6 44222677 44222677 + Missense_Mutation SNP G G C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . SLC35B2 NM_178148 exon4 c.C1065G p.I355M GTAAAAGATGAAG . 29.0 6.0 47.0 0.0 . 40 . . . none . . PASS Atlas-SNP TPST1 8460 hgsc.bcm.edu hg19 7 65705725 65705725 + Missense_Mutation SNP C C A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . TPST1 NM_003596 exon2 c.C313A p.P105T GTCATTCCCCGAA . 96.0 39.0 74.0 0.0 . 25 . . . none . . PASS Atlas-SNP ELN 2006 hgsc.bcm.edu hg19 7 73474279 73474279 + Missense_Mutation SNP C C T novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ELN NM_001081754 exon23 c.C1493T p.P498L TGGCTCCTGGAGT . 376.0 128.0 408.0 1.0 . 81 . . . none . . PASS Atlas-SNP DLD 1738 hgsc.bcm.edu hg19 7 107542828 107542828 + Missense_Mutation SNP T T C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . DLD NM_000108 exon4 c.T257C p.I86T GTTGTATTCCTTC . 97.0 31.0 75.0 0.0 . 72 . . . none . . PASS Atlas-SNP MET 4233 hgsc.bcm.edu hg19 7 116417457 116417457 + Missense_Mutation SNP G G A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . MET NM_001127500 exon16 c.G3328A p.V1110I GGTTGTGTATATC . 223.0 26.0 158.0 0.0 . 412 . . . none . . PASS Atlas-SNP STRIP2 57464 hgsc.bcm.edu hg19 7 129120722 129120722 + Silent SNP C C A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 FAM40B,NS,carcinoma,0,1 . NM_020704 exon19 c.C2041A p.R681R CATTCCCGGACCA . 102.0 6.0 118.0 0.0 . . . . . none . . PASS Atlas-SNP MCPH1 79648 hgsc.bcm.edu hg19 8 6302563 6302563 + Silent SNP T T C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . MCPH1 NM_001172574 exon8 c.T1320C p.A440A CCCTGCTCAGTTG . 120.0 18.0 117.0 0.0 . 65 . . . none . . PASS Atlas-SNP ST18 9705 hgsc.bcm.edu hg19 8 53092686 53092686 + Silent SNP G G T rs137908806 alternate_allele TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 ST18,NS,carcinoma,0,1 ST18 NM_014682 exon9 c.C273A p.T91T ACCTGCGGTAGAG . 248.0 13.0 268.0 0.0 . 212 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP ADCY8 114 hgsc.bcm.edu hg19 8 131921969 131921969 + Missense_Mutation SNP G G C rs368729916 TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ADCY8 NM_001115 exon6 c.C1625G p.S542C CCTCCAGATTCGA . 337.0 67.0 372.0 0.0 . 291 . . . weak . . PASS Atlas-SNP TEK 7010 hgsc.bcm.edu hg19 9 27197591 27197591 + Missense_Mutation SNP A A G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . TEK NM_000459 exon12 c.A1903G p.S635G ACCCTTAGTGACA . 38.0 8.0 44.0 0.0 . 250 . . . none . . PASS Atlas-SNP ZCCHC6 79670 hgsc.bcm.edu hg19 9 88943326 88943326 + Missense_Mutation SNP C C G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ZCCHC6 NM_024617 exon11 c.G1537C p.D513H CACTGTCAGTATG . 232.0 48.0 253.0 0.0 . 105 . . . none . . PASS Atlas-SNP CRAT 1384 hgsc.bcm.edu hg19 9 131864688 131864688 + Missense_Mutation SNP G G T novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . CRAT NM_000755 exon5 c.C621A p.H207Q GTAGTTGTGTACC . 162.0 42.0 232.0 0.0 . 43 . . . none . . PASS Atlas-SNP IKZF5 64376 hgsc.bcm.edu hg19 10 124755609 124755609 + Missense_Mutation SNP C C A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . IKZF5 NM_001271840 exon4 c.G217T p.G73W CAAACCCGTCTAC . 136.0 8.0 157.0 0.0 . 26 . . . none . . PASS Atlas-SNP MKI67 4288 hgsc.bcm.edu hg19 10 129902189 129902189 + Missense_Mutation SNP C C A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . MKI67 NM_002417 exon13 c.G7915T p.G2639C CATCACCGCTTGC . 161.0 8.0 212.0 0.0 . 363 . . . none . . PASS Atlas-SNP ZNF143 7702 hgsc.bcm.edu hg19 11 9519250 9519250 + Silent SNP T T G rs373920789 TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ZNF143 NM_003442 exon10 c.T870G p.T290T CAGAACTCATACA . 56.0 8.0 69.0 0.0 . 38 . . . weak . . PASS Atlas-SNP GIF 2694 hgsc.bcm.edu hg19 11 59610049 59610049 + Missense_Mutation SNP G G C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 GIF,NS,adenocarcinoma,0,1 GIF NM_005142 exon4 c.C378G p.N126K TTCAGCGTTGGGG . 58.0 9.0 81.0 1.0 . 43 . . . none . . PASS Atlas-SNP FADS1 3992 hgsc.bcm.edu hg19 11 61578255 61578255 + Missense_Mutation SNP A A C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . FADS1 NM_013402 exon5 c.T883G p.F295V CAAAGAAGAAGGG . 146.0 26.0 218.0 0.0 . 19 . . . none . . PASS Atlas-SNP SLC22A8 9376 hgsc.bcm.edu hg19 11 62760990 62760990 + Missense_Mutation SNP C C A rs374075913 alternate_allele TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . SLC22A8 NM_001184732 exon10 c.G1435T p.G479W TGATCCCGTAGAT . 130.0 8.0 137.0 0.0 . 60 . . . alt . . PASS Atlas-SNP STYK1 55359 hgsc.bcm.edu hg19 12 10780290 10780290 + Missense_Mutation SNP G G C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . STYK1 NM_018423 exon7 c.C667G p.L223V CTGTGAGATCATA . 77.0 24.0 57.0 0.0 . 55 . . . none . . PASS Atlas-SNP PLEKHA5 54477 hgsc.bcm.edu hg19 12 19506893 19506893 + Missense_Mutation SNP A A G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . PLEKHA5 NM_001256470 exon26 c.A3095G p.Y1032C CTTCCTATGTAAC . 112.0 25.0 87.0 0.0 . 198 . . . none . . PASS Atlas-SNP SLC38A4 55089 hgsc.bcm.edu hg19 12 47178364 47178364 + Missense_Mutation SNP T T A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . SLC38A4 NM_001143824 exon6 c.A454T p.I152F CTCCAATTTTTCC . 175.0 26.0 169.0 0.0 . 58 . . . none . . PASS Atlas-SNP EIF4B 1975 hgsc.bcm.edu hg19 12 53416313 53416313 + Missense_Mutation SNP G G C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . EIF4B NM_001417 exon6 c.G569C p.R190P GAAATCGGGATTC . 114.0 16.0 105.0 0.0 . 38 . . . none . . PASS Atlas-SNP RAB5B 5869 hgsc.bcm.edu hg19 12 56385887 56385887 + Missense_Mutation SNP A A T novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . RAB5B NM_002868 exon6 c.A539T p.K180M CTAAGAAGTTGCC . 105.0 35.0 86.0 0.0 . 22 . . . none . . PASS Atlas-SNP BIVM-ERCC5 0 hgsc.bcm.edu hg19 13 103492131 103492131 + Missense_Mutation SNP C C G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . . NM_001204425 exon9 c.C1428G p.D476E TCAGGACTCGGCA . 164.0 30.0 153.0 0.0 . . . . . none . . PASS Atlas-SNP ANPEP 290 hgsc.bcm.edu hg19 15 90349567 90349567 + Missense_Mutation SNP T T C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ANPEP NM_001150 exon2 c.A248G p.D83G TAGGAATCGGGTT . 85.0 18.0 137.0 0.0 . 124 . . . none . . PASS Atlas-SNP SV2B 9899 hgsc.bcm.edu hg19 15 91769497 91769497 + Missense_Mutation SNP G G C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . SV2B NM_014848 exon3 c.G4C p.D2H GGAATGGATGACT . 44.0 12.0 47.0 0.0 . 98 . . . none . . PASS Atlas-SNP RBBP6 5930 hgsc.bcm.edu hg19 16 24582943 24582943 + Missense_Mutation SNP G G C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . RBBP6 NM_006910 exon18 c.G4556C p.R1519T AAGAGAGAGATTT . 45.0 8.0 42.0 0.0 . 158 . . . none . . PASS Atlas-SNP RPGRIP1L 23322 hgsc.bcm.edu hg19 16 53691402 53691402 + Missense_Mutation SNP A A G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . RPGRIP1L NM_001127897 exon13 c.T1544C p.M515T ATTAGCATGTTTC . 89.0 17.0 57.0 0.0 . 118 . . . none . . PASS Atlas-SNP CBX1 10951 hgsc.bcm.edu hg19 17 46152378 46152378 + Silent SNP G G A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . CBX1 NM_006807 exon4 c.C403T p.L135L TCATCAGGAACAT . 268.0 62.0 273.0 0.0 . 18 . . . none . . PASS Atlas-SNP MTMR4 9110 hgsc.bcm.edu hg19 17 56572475 56572475 + Missense_Mutation SNP C C T novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . MTMR4 NM_004687 exon16 c.G3028A p.D1010N CATCATCCAAATA . 214.0 58.0 205.0 0.0 . 91 . . . none . . PASS Atlas-SNP CLTC 1213 hgsc.bcm.edu hg19 17 57771125 57771125 + Missense_Mutation SNP T T C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . CLTC NM_004859 exon32 c.T4940C p.V1647A CCAGTGTTGCCGT . 144.0 55.0 151.0 0.0 . 124 . . . none . . PASS Atlas-SNP ACE 1636 hgsc.bcm.edu hg19 17 61570904 61570904 + Missense_Mutation SNP G G T novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ACE NM_000789 exon20 c.G3020T p.R1007M CCTTGAGGGAGGG . 87.0 18.0 86.0 0.0 . 187 . . . none . . PASS Atlas-SNP GRB2 2885 hgsc.bcm.edu hg19 17 73316567 73316567 + Missense_Mutation SNP C C A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . GRB2 NM_002086 exon6 c.G536T p.R179L TCTCCCCGGCGGA . 223.0 10.0 266.0 0.0 . 33 . . . none . . PASS Atlas-SNP DYM 54808 hgsc.bcm.edu hg19 18 46956680 46956680 + Missense_Mutation SNP T T G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . DYM NM_017653 exon2 c.A85C p.N29H GGTCATTCTCAGA . 171.0 29.0 169.0 0.0 . 52 . . . none . . PASS Atlas-SNP MYO1F 4542 hgsc.bcm.edu hg19 19 8616967 8616967 + Missense_Mutation SNP G G T novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 MYO1F,colon,carcinoma,0,1 MYO1F NM_012335 exon7 c.C586A p.R196S CCACGCGGGACTT . 125.0 7.0 188.0 0.0 . 128 . . . none . . PASS Atlas-SNP ZNF699 374879 hgsc.bcm.edu hg19 19 9406673 9406673 + Missense_Mutation SNP G G C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ZNF699 NM_198535 exon5 c.C1407G p.H469Q TCCAGTGTGATCT . 55.0 8.0 57.0 0.0 . 67 . . . none . . PASS Atlas-SNP ATG4D 84971 hgsc.bcm.edu hg19 19 10655668 10655668 + Missense_Mutation SNP C C A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ATG4D NM_032885 exon3 c.C355A p.R119S GTGTCCCGCCTGT . 177.0 9.0 290.0 0.0 . 47 . . . none . . PASS Atlas-SNP UNC13A 23025 hgsc.bcm.edu hg19 19 17763482 17763482 + Missense_Mutation SNP C C A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . UNC13A NM_001080421 exon12 c.G1397T p.R466L TCTCCCCGGGCCT . 363.0 16.0 473.0 0.0 . 299 . . . none . . PASS Atlas-SNP PIK3R2 5296 hgsc.bcm.edu hg19 19 18274091 18274091 + Missense_Mutation SNP G G A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . PIK3R2 NM_005027 exon11 c.G1309A p.D437N AAGGAGGACAGCG . 75.0 13.0 135.0 0.0 . 48 . . . none . . PASS Atlas-SNP ZNF85 7639 hgsc.bcm.edu hg19 19 21132138 21132138 + Missense_Mutation SNP T T C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ZNF85 NM_001256171 exon5 c.T908C p.L303P CAACTCTTACTAC . 32.0 4.0 59.0 0.0 . 72 . . . none . . PASS Atlas-SNP SUPT5H 6829 hgsc.bcm.edu hg19 19 39964723 39964723 + Missense_Mutation SNP C C A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . SUPT5H NM_003169 exon25 c.C2613A p.N871K GGTCAACCCACAA . 66.0 11.0 121.0 0.0 . 119 . . . none . . PASS Atlas-SNP ZNF223 7766 hgsc.bcm.edu hg19 19 44570872 44570872 + Silent SNP C C T novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ZNF223 NM_013361 exon5 c.C891T p.F297F GAGCTTCCGTCTT . 107.0 15.0 148.0 0.0 . 61 . . . none . . PASS Atlas-SNP FCGRT 2217 hgsc.bcm.edu hg19 19 50017313 50017313 + Missense_Mutation SNP A A G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . FCGRT NM_001136019 exon3 c.A248G p.Y83C CCTGGTATTGGGA . 49.0 19.0 63.0 0.0 . 23 . . . none . . PASS Atlas-SNP ZNF473 25888 hgsc.bcm.edu hg19 19 50549983 50549983 + Missense_Mutation SNP G G C novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ZNF473 NM_015428 exon5 c.G2283C p.Q761H TTGTCAGGAATGC . 111.0 26.0 136.0 0.0 . 86 . . . none . . PASS Atlas-SNP TTYH1 57348 hgsc.bcm.edu hg19 19 54937848 54937848 + Splice_Site SNP A A G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 TTYH1,larynx,carcinoma,0,1 TTYH1 NM_001005367 exon5 c.639-2A>G . CCTCCCAGGTGGC . 116.0 21.0 162.0 1.0 . 78 . . . none . . PASS Atlas-SNP KIR2DL4 3805 hgsc.bcm.edu hg19 19 55324637 55324637 + Missense_Mutation SNP C C T novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . KIR2DL4 NM_001080772 exon6 c.C764T p.T255I TCTTTACCATCCT . 63.0 25.0 57.0 0.0 . 62 . . . none . . PASS Atlas-SNP STAU1 6780 hgsc.bcm.edu hg19 20 47741019 47741019 + Nonsense_Mutation SNP T T A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . STAU1 NM_017453 exon7 c.A715T p.K239X CATTTTTCTTTGA . 268.0 78.0 248.0 0.0 . 54 . . . none . . PASS Atlas-SNP DSCAM 1826 hgsc.bcm.edu hg19 21 41496202 41496202 + Missense_Mutation SNP A A G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . DSCAM NM_001271534 exon20 c.T3616C p.F1206L ACACAAAGACCAT . 163.0 26.0 207.0 0.0 . 347 . . . none . . PASS Atlas-SNP HDHD1 8226 hgsc.bcm.edu hg19 X 7023838 7023838 + Missense_Mutation SNP T T G novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . HDHD1 NM_001135565 exon3 c.A172C p.N58H AGCGATTACATAT . 33.0 12.0 34.0 0.0 . 21 . . . none . . PASS Atlas-SNP ZFP37 7539 hgsc.bcm.edu hg19 9 115806495 115806495 + Frame_Shift_Del DEL G G - novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ZFP37 NM_003408 exon4 c.404delT p.L135fs . . 196.0 29.0 165.0 0.0 . 93 . 0.147959 0 none . . PASS Atlas-INDEL GRIP1 23426 hgsc.bcm.edu hg19 12 66765625 66765625 + Frame_Shift_Del DEL A A - novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . GRIP1 NM_021150 exon22 c.2706delC p.F902fs . . 202.0 34.0 219.0 0.0 . 106 . 0.168317 0 none . . PASS Atlas-INDEL RCBTB1 55213 hgsc.bcm.edu hg19 13 50115836 50115836 + Frame_Shift_Del DEL C C - novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . RCBTB1 NM_018191 exon11 c.1301delA p.D434fs . . 86.0 15.0 95.0 0.0 . 34 . 0.174419 0 none . . PASS Atlas-INDEL SLC7A14 57709 hgsc.bcm.edu hg19 3 170201153 170201154 + Frame_Shift_Ins INS - - A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . SLC7A14 NM_020949 exon6 c.1065_1066insT p.F355fs . . 117.0 14.0 166.0 0.0 . 110 . 0.119658 0 none . . PASS Atlas-INDEL ARHGAP21 57584 hgsc.bcm.edu hg19 10 24908604 24908604 + Frame_Shift_Del DEL T T - novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ARHGAP21 NM_020824 exon9 c.2221delC p.P741fs . . 156.0 25.0 177.0 0.0 . 185 . 0.160256 0 none . . PASS Atlas-INDEL INTS2 57508 hgsc.bcm.edu hg19 17 59945081 59945082 + In_Frame_Ins INS - - GAA novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . INTS2 NM_020748 exon25 c.3452_3453insTTC p.Q1151delinsLQ . . 132.0 27.0 100.0 0.0 . 89 . 0.204545 0 none . . PASS Atlas-INDEL MYH15 22989 hgsc.bcm.edu hg19 3 108107907 108107918 + In_Frame_Del DEL TTCCAGTTCACG TTCCAGTTCACG - novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 TTCCAGTTCACG TTCCAGTTCACG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . MYH15 NM_014981 exon39 c.5495_5506del p.1832_1836del . . 136.0 21.0 242.0 0.0 . 223 . 0.154412 0 none . . PASS Atlas-INDEL RPL24 6152 hgsc.bcm.edu hg19 3 101401697 101401698 + Frame_Shift_Ins INS - - A novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . RPL24 NM_000986 exon4 c.247_248insT p.T83fs . . 98.0 23.0 96.0 0.0 . 8 . 0.234694 0 none . . PASS Atlas-INDEL STOX1 219736 hgsc.bcm.edu hg19 10 70645179 70645179 + Frame_Shift_Del DEL T T - novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 STOX1,NS,carcinoma,0,1 STOX1 NM_152709 exon3 c.1626delC p.I542fs . . 53.0 12.0 63.0 0.0 . 75 . 0.226415 0 none . . PASS Atlas-INDEL BAIAP2 10458 hgsc.bcm.edu hg19 17 79082274 79082274 + Splice_Site DEL G G - novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . BAIAP2 NM_001144888 exon13 c.1501-2G>- . . . 55.0 12.0 70.0 0.0 . 74 . 0.218182 0 none . . PASS Atlas-INDEL ADAP2 55803 hgsc.bcm.edu hg19 17 29261211 29261211 + Frame_Shift_Del DEL G G - novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ADAP2 NM_018404 exon5 c.405delA p.R135fs . . 59.0 10.0 51.0 0.0 . 36 . 0.169492 0 none . . PASS Atlas-INDEL SYNPO 11346 hgsc.bcm.edu hg19 5 150027927 150027927 + Frame_Shift_Del DEL A A - novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . SYNPO NM_001166209 exon3 c.821delT p.L274fs . . 92.0 24.0 135.0 0.0 . 147 . 0.26087 0 none . . PASS Atlas-INDEL ANK2 287 hgsc.bcm.edu hg19 4 114195785 114195785 + Frame_Shift_Del DEL G G - novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . ANK2 NM_001148 exon15 c.1662delA p.A554fs . . 69.0 12.0 85.0 0.0 . 576 . 0.173913 0 none . . PASS Atlas-INDEL SOCS6 9306 hgsc.bcm.edu hg19 18 67992496 67992496 + Frame_Shift_Del DEL A A - novel TCGA-DZ-6132-01A-11D-1961-08 TCGA-DZ-6132-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be6d6e8a-236f-4a34-a19c-c7d6290d97f0 499ed479-d046-4343-9bd4-14b7201bdc55 . SOCS6 NM_004232 exon2 c.591delT p.H197fs . . 129.0 28.0 146.0 0.0 . 54 . 0.217054 0 none . . PASS Atlas-INDEL