Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ZCCHC17	51538	hgsc.bcm.edu	hg19	1	31836979	31836979	+	Missense_Mutation	SNP	A	A	C	rs111803813	alternate_allele	TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ZCCHC17	NM_016505	exon8	c.A665C	p.D222A	CAAAAGACAGCAA	.	133.0	23.0	99.0	0.0	.	30	.	.	.	alt	G|1.000;|0.000	.	PASS	Atlas-SNP
ADAM30	11085	hgsc.bcm.edu	hg19	1	120436921	120436921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ADAM30	NM_021794	exon1	c.G2039A	p.G680E	ATCGCCCCTCTGA	.	95.0	31.0	65.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
AIM2	9447	hgsc.bcm.edu	hg19	1	159033450	159033450	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	AIM2	NM_004833	exon5	c.G831C	p.K277N	GTTTTTCTTCTTT	.	199.0	60.0	167.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
GLUL	2752	hgsc.bcm.edu	hg19	1	182356292	182356292	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	GLUL	NM_001033056	exon3	c.T302A	p.V101D	TTGAAAACTTCAC	.	106.0	10.0	109.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
PTGS2	5743	hgsc.bcm.edu	hg19	1	186645691	186645691	+	Missense_Mutation	SNP	C	C	A	rs148160346	alternate_allele	TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	PTGS2_ENST00000367468,NS,carcinoma,-1,2	PTGS2	NM_000963	exon7	c.G878T	p.R293L	TGTTCCCGCAGCC	.	152.0	7.0	114.0	0.0	.	144	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21229220	21229220	+	Missense_Mutation	SNP	C	C	A	rs201156840	bycluster	TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	APOB	NM_000384	exon26	c.G10520T	p.R3507L	TATTCCCGAGAAA	.	169.0	8.0	133.0	0.0	.	761	.	.	.	weak	.	.	PASS	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	hg19	2	207171574	207171574	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	ZDBF2_ENST00000374423,caecum,carcinoma,0,2	ZDBF2	NM_020923	exon5	c.G2322A	p.R774R	AGAACGGCACATT	.	340.0	54.0	263.0	0.0	.	531	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215865517	215865517	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	ABCA12,NS,carcinoma,0,1	ABCA12	NM_173076	exon22	c.G3091C	p.A1031P	TGATTGCTCTTTC	.	226.0	78.0	191.0	0.0	.	368	.	.	.	none	.	.	PASS	Atlas-SNP
DAPP1	27071	hgsc.bcm.edu	hg19	4	100787246	100787246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	DAPP1	NM_014395	exon8	c.G742C	p.D248H	GAAGCTGATGAGT	.	63.0	13.0	52.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
GALNT7	51809	hgsc.bcm.edu	hg19	4	174225146	174225146	+	Splice_Site	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	GALNT7	NM_017423	exon8	c.1267-1G>A	.	TTCATAGATATGG	.	178.0	57.0	135.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
ARSK	153642	hgsc.bcm.edu	hg19	5	94922371	94922371	+	Missense_Mutation	SNP	A	A	G	rs201849642		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ARSK	NM_198150	exon5	c.A805G	p.K269E	TTTACAAAAAAAG	.	86.0	20.0	53.0	0.0	.	29	.	.	.	weak	A|0.999;G|0.001	0.001	PASS	Atlas-SNP
TEX15	56154	hgsc.bcm.edu	hg19	8	30694449	30694449	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	TEX15	NM_031271	exon3	c.A8202G	p.Q2734Q	TTGAGATTGAAAA	.	104.0	43.0	67.0	0.0	.	350	.	.	.	none	.	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1099777	1099777	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	MUC2	NM_002457	exon41	c.T7362C	p.P2454P	GGGACCTGACAAT	.	137.0	54.0	174.0	0.0	.	614	.	.	.	none	.	.	PASS	Atlas-SNP
FZD4	8322	hgsc.bcm.edu	hg19	11	86663408	86663408	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	FZD4,NS,carcinoma,0,1	FZD4	NM_012193	exon2	c.C390A	p.P130P	CAGGACGGGTTCA	.	212.0	12.0	217.0	1.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
A2ML1	144568	hgsc.bcm.edu	hg19	12	9000291	9000291	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	A2ML1	NM_144670	exon15	c.C1830T	p.R610R	CAACCGCTCTGTG	.	199.0	15.0	173.0	0.0	.	199	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM5	10329	hgsc.bcm.edu	hg19	12	64174892	64174892	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	TMEM5	NM_014254	exon2	c.T263G	p.L88X	AAATATTAGATAA	.	247.0	85.0	163.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R12A	4659	hgsc.bcm.edu	hg19	12	80203769	80203769	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	PPP1R12A	NM_002480	exon10	c.A1261C	p.I421L	GAGAAATTTTTGT	.	70.0	21.0	45.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
P2RX7	5027	hgsc.bcm.edu	hg19	12	121622232	121622232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	P2RX7	NM_002562	exon13	c.A1415G	p.D472G	CCAGGGATAGCCC	.	68.0	4.0	77.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
PCDH8	5100	hgsc.bcm.edu	hg19	13	53422307	53422307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	PCDH8,NS,carcinoma,0,1	PCDH8	NM_032949	exon1	c.G265A	p.G89S	CCAGGCCGGCGTC	.	96.0	35.0	91.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
MAGEL2	54551	hgsc.bcm.edu	hg19	15	23890238	23890238	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	MAGEL2	NM_019066	exon1	c.G2652C	p.K884N	GGTGGCCTTGCCG	.	111.0	13.0	107.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
MGRN1	23295	hgsc.bcm.edu	hg19	16	4700468	4700468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	MGRN1	NM_001142291	exon2	c.G191T	p.G64V	TCCTGGGCAGCCG	.	140.0	46.0	182.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
CMTM1	113540	hgsc.bcm.edu	hg19	16	66612903	66612903	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	CMTM1	NM_052999	exon4	c.G860A	p.X287X	CCGCCTGAAGCCA	.	101.0	38.0	95.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
VMP1	81671	hgsc.bcm.edu	hg19	17	57812735	57812735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	VMP1	NM_030938	exon3	c.G113T	p.R38L	GGGAGCGGGAAGA	.	74.0	7.0	49.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF337	26152	hgsc.bcm.edu	hg19	20	25656223	25656223	+	Silent	SNP	C	C	A	rs370580651	alternate_allele	TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ZNF337	NM_015655	exon5	c.G1701T	p.S567S	TTCCCCCGAGTGT	.	156.0	7.0	143.0	0.0	.	65	.	.	.	alt	.	.	PASS	Atlas-SNP
C21orf62	56245	hgsc.bcm.edu	hg19	21	34166192	34166192	+	Missense_Mutation	SNP	A	A	G	rs79194766		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	C21orf62	NM_001162495	exon4	c.T541C	p.F181L	ATTTAAAGGCTGA	.	114.0	5.0	82.0	0.0	.	26	.	.	.	weak	.	.	PASS	Atlas-SNP
ZBTB21	49854	hgsc.bcm.edu	hg19	21	43413770	43413770	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	.	NM_001098402	exon3	c.A435G	p.Q145Q	TCTCTTTTGAGAA	.	130.0	56.0	112.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP10-10	353333	hgsc.bcm.edu	hg19	21	46057373	46057373	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	KRTAP10-10,NS,carcinoma,0,1	KRTAP10-10	NM_181688	exon1	c.C39T	p.C13C	CGCCTGCACTGAC	.	201.0	37.0	219.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
FAM47B	170062	hgsc.bcm.edu	hg19	X	34961454	34961454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	FAM47B	NM_152631	exon1	c.G506A	p.R169Q	AGGCCCGGGAGAA	.	36.0	30.0	34.0	0.0	.	209	.	.	.	none	.	.	PASS	Atlas-SNP
IQSEC2	23096	hgsc.bcm.edu	hg19	X	53268433	53268433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	IQSEC2	NM_001111125	exon11	c.G3059C	p.S1020T	CGGAAACTGTACG	.	42.0	33.0	58.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	hg19	9	114454268	114454270	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	C9orf84	NM_173521	exon25	c.3796_3798del	p.1266_1266del	.	.	56.0	10.0	45.0	0.0	.	207	.	0.178571	0	none	.	.	PASS	Atlas-INDEL