Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm KIAA1751 85452 hgsc.bcm.edu hg19 1 1887063 1887063 + Missense_Mutation SNP C C T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd KIAA1751,NS,carcinoma,0,1 KIAA1751 NM_001080484 exon18 c.G2243A p.G748E TCAGCCCCCTGGA . 149.0 38.0 149.0 0.0 . 92 . . . none . . PASS Atlas-SNP CAMTA1 23261 hgsc.bcm.edu hg19 1 7721912 7721912 + Missense_Mutation SNP G G C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . CAMTA1 NM_015215 exon8 c.G791C p.C264S GCCTCTGCACCGG . 23.0 9.0 34.0 0.0 . 226 . . . none . . PASS Atlas-SNP RERE 473 hgsc.bcm.edu hg19 1 8424145 8424145 + Missense_Mutation SNP T T A novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . RERE NM_012102 exon16 c.A1711T p.S571C TCATGCTATGCTT . 100.0 42.0 84.0 0.0 . 129 . . . none . . PASS Atlas-SNP HMGCL 3155 hgsc.bcm.edu hg19 1 24147039 24147039 + Missense_Mutation SNP A A C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . HMGCL NM_000191 exon2 c.T105G p.I35M TTCCACAATTTTC . 149.0 53.0 133.0 0.0 . 22 . . . none . . PASS Atlas-SNP PHACTR4 65979 hgsc.bcm.edu hg19 1 28785697 28785697 + Missense_Mutation SNP T T C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . PHACTR4 NM_023923 exon2 c.T148C p.F50L TCAGGCTTTGGCA . 84.0 28.0 93.0 0.0 . 64 . . . none . . PASS Atlas-SNP PUM1 9698 hgsc.bcm.edu hg19 1 31406096 31406096 + Missense_Mutation SNP A A T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . PUM1 NM_001020658 exon22 c.T3529A p.L1177I GCCCTAAGTCAAC . 162.0 63.0 178.0 0.0 . 107 . . . none . . PASS Atlas-SNP RBM15 64783 hgsc.bcm.edu hg19 1 110883658 110883658 + Missense_Mutation SNP C C G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . RBM15 NM_022768 exon1 c.C1631G p.T544S CCTTGACTCATTA . 143.0 57.0 107.0 0.0 . 93 . . . none . . PASS Atlas-SNP ADCY10 55811 hgsc.bcm.edu hg19 1 167870956 167870956 + Missense_Mutation SNP T T A novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . ADCY10 NM_018417 exon5 c.A380T p.H127L AATCCATGGATCT . 237.0 83.0 198.0 0.0 . 175 . . . none . . PASS Atlas-SNP IKBKE 9641 hgsc.bcm.edu hg19 1 206651658 206651658 + Missense_Mutation SNP A A G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . IKBKE NM_001193322 exon9 c.A968G p.H323R TGCACCACATCTA . 241.0 66.0 247.0 0.0 . 77 . . . none . . PASS Atlas-SNP SYT14 255928 hgsc.bcm.edu hg19 1 210267875 210267875 + Silent SNP T T C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . SYT14 NM_001146264 exon6 c.T786C p.S262S AGAAAGTTTTCAT . 66.0 26.0 71.0 0.0 . 89 . . . none . . PASS Atlas-SNP SLC30A6 55676 hgsc.bcm.edu hg19 2 32422810 32422810 + Missense_Mutation SNP T T A novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . SLC30A6 NM_001193513 exon11 c.T700A p.F234I AGTATCTTCCTTC . 151.0 58.0 144.0 0.0 . 37 . . . none . . PASS Atlas-SNP MTIF2 4528 hgsc.bcm.edu hg19 2 55470636 55470636 + Missense_Mutation SNP A A G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . MTIF2 NM_002453 exon12 c.T1480C p.F494L CTAAAAACCGTAG . 145.0 48.0 145.0 0.0 . 64 . . . none . . PASS Atlas-SNP USP34 9736 hgsc.bcm.edu hg19 2 61493234 61493234 + Silent SNP C C T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . USP34 NM_014709 exon42 c.G5502A p.K1834K TTTGCACTTTGGC . 82.0 33.0 67.0 0.0 . 334 . . . none . . PASS Atlas-SNP RAB3GAP1 22930 hgsc.bcm.edu hg19 2 135891507 135891507 + Missense_Mutation SNP A A G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd RAB3GAP1,NS,carcinoma,0,1 RAB3GAP1 NM_001172435 exon15 c.A1403G p.N468S TGATCAATTTTTA . 128.0 46.0 157.0 0.0 . 87 . . . none . . PASS Atlas-SNP ABTB1 80325 hgsc.bcm.edu hg19 3 127396051 127396051 + Silent SNP C C A rs368024563 alternate_allele TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . ABTB1 NM_172027 exon8 c.C684A p.I228I GACCATCGAGCCC . 19.0 8.0 23.0 0.0 . 36 . . . alt . . PASS Atlas-SNP LSG1 55341 hgsc.bcm.edu hg19 3 194379786 194379786 + Missense_Mutation SNP T T G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . LSG1 NM_018385 exon7 c.A659C p.E220A CGCTGCTCAGCAG . 265.0 96.0 263.0 0.0 . 38 . . . none . . PASS Atlas-SNP TFRC 7037 hgsc.bcm.edu hg19 3 195782165 195782165 + Missense_Mutation SNP T T A novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . TFRC NM_001128148 exon17 c.A1685T p.D562V GGATAATCTGTGT . 68.0 26.0 77.0 0.0 . 54 . . . none . . PASS Atlas-SNP TFRC 7037 hgsc.bcm.edu hg19 3 195782166 195782166 + Missense_Mutation SNP C C G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . TFRC NM_001128148 exon17 c.G1684C p.D562H GATAATCTGTGTC . 67.0 25.0 76.0 0.0 . 54 . . . none . . PASS Atlas-SNP CEP135 9662 hgsc.bcm.edu hg19 4 56874494 56874494 + Missense_Mutation SNP A A G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . CEP135 NM_025009 exon18 c.A2282G p.E761G TATAGGAAAAAGC . 84.0 5.0 91.0 0.0 . 115 . . . none . . PASS Atlas-SNP RCHY1 25898 hgsc.bcm.edu hg19 4 76415883 76415883 + Missense_Mutation SNP A A C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . RCHY1 NM_015436 exon8 c.T565G p.S189A AAGCAGAGTGCAT . 80.0 26.0 62.0 0.0 . 17 . . . none . . PASS Atlas-SNP BMP2K 55589 hgsc.bcm.edu hg19 4 79786783 79786783 + Silent SNP T T C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . BMP2K NM_017593 exon10 c.T1140C p.T380T TGCTACTACTGCC . 104.0 44.0 104.0 0.0 . 169 . . . none . . PASS Atlas-SNP CENPE 1062 hgsc.bcm.edu hg19 4 104081805 104081805 + Missense_Mutation SNP C C T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . CENPE NM_001813 exon21 c.G2263A p.E755K CTACTTCAGAAGG . 85.0 39.0 90.0 0.0 . 253 . . . none . . PASS Atlas-SNP LRBA 987 hgsc.bcm.edu hg19 4 151821345 151821345 + Missense_Mutation SNP G G T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . LRBA NM_006726 exon14 c.C1780A p.L594M TGGACAGATAAGT . 68.0 24.0 77.0 0.0 . 253 . . . none . . PASS Atlas-SNP WWC2 80014 hgsc.bcm.edu hg19 4 184182067 184182067 + Missense_Mutation SNP T T A novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . WWC2 NM_024949 exon11 c.T1291A p.S431T AGCCTCTCTGCCA . 36.0 18.0 27.0 0.0 . 78 . . . none . . PASS Atlas-SNP KIAA0947 23379 hgsc.bcm.edu hg19 5 5461992 5461992 + Missense_Mutation SNP A A T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . KIAA0947 NM_015325 exon13 c.A2545T p.T849S TTCAAGACCACTG . 96.0 41.0 109.0 0.0 . 301 . . . none . . PASS Atlas-SNP ITGA1 3672 hgsc.bcm.edu hg19 5 52211309 52211309 + Missense_Mutation SNP G G T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . ITGA1 NM_181501 exon15 c.G1873T p.G625W TCAGGTGGGGATG . 157.0 62.0 171.0 0.0 . 112 . . . none . . PASS Atlas-SNP LHFPL2 10184 hgsc.bcm.edu hg19 5 77784725 77784725 + Missense_Mutation SNP G G A novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . LHFPL2 NM_005779 exon5 c.C682T p.L228F ACTAAAGGAGGCA . 124.0 52.0 135.0 0.0 . 9 . . . none . . PASS Atlas-SNP PCDHB14 56122 hgsc.bcm.edu hg19 5 140605207 140605207 + Silent SNP G G C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . PCDHB14 NM_018934 exon1 c.G2130C p.A710A CGTGGCGGTGCGG . 333.0 109.0 391.0 0.0 . 132 . . . none . . PASS Atlas-SNP SLC22A7 10864 hgsc.bcm.edu hg19 6 43267444 43267444 + Missense_Mutation SNP T T C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . SLC22A7 NM_153320 exon3 c.T583C p.Y195H GTCAGCTATGTAA . 178.0 68.0 166.0 0.0 . 69 . . . none . . PASS Atlas-SNP EPHA7 2045 hgsc.bcm.edu hg19 6 93969151 93969151 + Missense_Mutation SNP C C A novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . EPHA7 NM_004440 exon10 c.G1845T p.E615D TGGGTCCTCATAG . 168.0 72.0 172.0 0.0 . 251 . . . none . . PASS Atlas-SNP OSTM1 28962 hgsc.bcm.edu hg19 6 108395713 108395713 + Missense_Mutation SNP G G C rs201176284 bycluster TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . OSTM1 NM_014028 exon1 c.C143G p.S48W TGCTCCGACAGGA . 12.0 4.0 3.0 0.0 . 22 . . . weak . . PASS Atlas-SNP MAP3K4 4216 hgsc.bcm.edu hg19 6 161470014 161470014 + Nonsense_Mutation SNP C C A novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd MAP3K4_ENST00000392142,NS,carcinoma,0,2 MAP3K4 NM_006724 exon3 c.C710A p.S237X TTACCTCAGTCTC . 54.0 23.0 49.0 0.0 . 364 . . . none . . PASS Atlas-SNP HEATR2 54919 hgsc.bcm.edu hg19 7 803456 803456 + Missense_Mutation SNP T T G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . HEATR2 NM_017802 exon8 c.T1628G p.M543R AGACGATGGACTC . 261.0 44.0 137.0 0.0 . 62 . . . none . . PASS Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47870900 47870900 + Missense_Mutation SNP G G C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . PKD1L1 NM_138295 exon42 c.C6388G p.Q2130E AAGGCTGAAGGGC . 211.0 48.0 105.0 0.0 . 328 . . . none . . PASS Atlas-SNP COL1A2 1278 hgsc.bcm.edu hg19 7 94057039 94057039 + Missense_Mutation SNP G G T rs145541630 alternate_allele TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . COL1A2 NM_000089 exon49 c.G3368T p.R1123L AGCCTCGCTCAGC . 261.0 53.0 113.0 0.0 . 240 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP GPR37 2861 hgsc.bcm.edu hg19 7 124404923 124404923 + Missense_Mutation SNP G G C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . GPR37 NM_005302 exon1 c.C108G p.N36K AGTTTCGTTTCTG . 86.0 61.0 46.0 0.0 . 89 . . . none . . PASS Atlas-SNP MLL3 58508 hgsc.bcm.edu hg19 7 151962168 151962168 + Missense_Mutation SNP C C G rs78352960 alternate_allele TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd MLL3_ENST00000355193,extremity,malignant_melanoma,0,4 MLL3 NM_170606 exon8 c.G1139C p.R380P CCTGCACGTTTTA . 901.0 146.0 771.0 0.0 . 1564 . . . alt C|0.500;A|0.500 . PASS Atlas-SNP SETX 23064 hgsc.bcm.edu hg19 9 135156906 135156906 + Missense_Mutation SNP T T C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . SETX NM_015046 exon20 c.A6602G p.K2201R ATGAGCTTATTGC . 118.0 53.0 130.0 0.0 . 234 . . . none . . PASS Atlas-SNP SUV39H2 79723 hgsc.bcm.edu hg19 10 14939337 14939337 + Missense_Mutation SNP A A T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . SUV39H2 NM_001193424 exon3 c.A670T p.T224S CCTGGTACTCCCA . 132.0 47.0 138.0 0.0 . 72 . . . none . . PASS Atlas-SNP SUV39H2 79723 hgsc.bcm.edu hg19 10 14939338 14939338 + Missense_Mutation SNP C C T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . SUV39H2 NM_001193424 exon3 c.C671T p.T224I CTGGTACTCCCAT . 131.0 49.0 138.0 0.0 . 72 . . . none . . PASS Atlas-SNP KIAA1217 56243 hgsc.bcm.edu hg19 10 24835172 24835172 + Silent SNP T T C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . KIAA1217 NM_019590 exon21 c.T5751C p.H1917H CATCCATACTCCC . 99.0 51.0 111.0 0.0 . 235 . . . none . . PASS Atlas-SNP ARMC4 55130 hgsc.bcm.edu hg19 10 28270470 28270470 + Silent SNP T T C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . ARMC4 NM_018076 exon7 c.A861G p.K287K TGAACCTTTTCTC . 127.0 8.0 170.0 0.0 . 177 . . . none . . PASS Atlas-SNP CUL2 8453 hgsc.bcm.edu hg19 10 35324145 35324145 + Silent SNP G G T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . CUL2 NM_001198778 exon10 c.C1014A p.I338I ATCATGGATGTGG . 63.0 21.0 59.0 0.0 . 63 . . . none . . PASS Atlas-SNP ALOX5 240 hgsc.bcm.edu hg19 10 45869784 45869784 + Missense_Mutation SNP C C A novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . ALOX5 NM_000698 exon1 c.C57A p.D19E CACTGACGACTAC . 12.0 6.0 10.0 0.0 . 88 . . . none . . PASS Atlas-SNP GRID1 2894 hgsc.bcm.edu hg19 10 87407050 87407050 + Missense_Mutation SNP T T C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . GRID1 NM_017551 exon13 c.A2102G p.Q701R CTGTCCTGCTCCA . 427.0 157.0 418.0 0.0 . 204 . . . none . . PASS Atlas-SNP NRAP 4892 hgsc.bcm.edu hg19 10 115411657 115411657 + Missense_Mutation SNP T T C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . NRAP NM_001261463 exon7 c.A580G p.K194E CTCTCTTATACTC . 71.0 21.0 66.0 0.0 . 208 . . . none . . PASS Atlas-SNP IFITM1 8519 hgsc.bcm.edu hg19 11 315058 315058 + Missense_Mutation SNP C C G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd IFITM1,NS,carcinoma,0,1 IFITM1 NM_003641 exon2 c.C323G p.S108C TCGGCTCTGTGAC . 122.0 35.0 114.0 0.0 . 15 . . . none . . PASS Atlas-SNP SIGIRR 59307 hgsc.bcm.edu hg19 11 407548 407548 + Missense_Mutation SNP A A G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . SIGIRR NM_001135053 exon6 c.T502C p.Y168H AGACGTAGGCGTC . 40.0 10.0 21.0 0.0 . 22 . . . none . . PASS Atlas-SNP ALKBH3 221120 hgsc.bcm.edu hg19 11 43905565 43905565 + Silent SNP T T C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . ALKBH3 NM_139178 exon4 c.T216C p.I72I AGTGATTGAGTAA . 214.0 83.0 233.0 0.0 . 33 . . . none . . PASS Atlas-SNP PC 5091 hgsc.bcm.edu hg19 11 66620716 66620716 + Missense_Mutation SNP A A T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . PC NM_000920 exon12 c.T1507A p.Y503N CGAGGTAGTGCAA . 88.0 28.0 104.0 0.0 . 116 . . . none . . PASS Atlas-SNP PHLDB1 23187 hgsc.bcm.edu hg19 11 118513026 118513026 + Missense_Mutation SNP A A T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . PHLDB1 NM_001144758 exon13 c.A2791T p.M931L GAGCTGATGGCCG . 155.0 53.0 151.0 0.0 . 103 . . . none . . PASS Atlas-SNP LRP6 4040 hgsc.bcm.edu hg19 12 12334248 12334248 + Missense_Mutation SNP C C T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . LRP6 NM_002336 exon6 c.G1102A p.D368N CAGGATCGTAATC . 295.0 162.0 171.0 0.0 . 170 . . . none . . PASS Atlas-SNP PPFIA2 8499 hgsc.bcm.edu hg19 12 81671123 81671123 + Missense_Mutation SNP G G A novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . PPFIA2 NM_001220473 exon27 c.C3283T p.R1095W CTTCCCGTCTTCT . 20.0 12.0 15.0 0.0 . 207 . . . none . . PASS Atlas-SNP RASSF9 9182 hgsc.bcm.edu hg19 12 86199543 86199543 + Missense_Mutation SNP T T C rs367564230 alternate_allele TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . RASSF9 NM_005447 exon2 c.A245G p.K82R CTCCACTTCTCTA . 216.0 53.0 137.0 0.0 . 100 . . . alt . . PASS Atlas-SNP TECPR2 9895 hgsc.bcm.edu hg19 14 102906785 102906785 + Missense_Mutation SNP G G T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . TECPR2 NM_001172631 exon11 c.G2591T p.W864L TTCTCTGGAAGAT . 187.0 64.0 179.0 0.0 . 114 . . . none . . PASS Atlas-SNP TECPR2 9895 hgsc.bcm.edu hg19 14 102906786 102906786 + Missense_Mutation SNP G G T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . TECPR2 NM_001172631 exon11 c.G2592T p.W864C TCTCTGGAAGATT . 183.0 63.0 177.0 0.0 . 114 . . . none . . PASS Atlas-SNP TRPM1 4308 hgsc.bcm.edu hg19 15 31362391 31362391 + Missense_Mutation SNP G G T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . TRPM1 NM_001252020 exon3 c.C173A p.P58H GGCAGAGGGGGGA . 382.0 147.0 370.0 1.0 . 183 . . . none . . PASS Atlas-SNP ANKDD1A 348094 hgsc.bcm.edu hg19 15 65223120 65223120 + Splice_Site SNP T T G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . ANKDD1A NM_182703 exon7 c.669+2T>G . ATGCGGTGAGTCA . 33.0 14.0 24.0 0.0 . 47 . . . none . . PASS Atlas-SNP IGDCC4 57722 hgsc.bcm.edu hg19 15 65684505 65684505 + Nonsense_Mutation SNP T T A novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . IGDCC4 NM_020962 exon11 c.A2089T p.K697X CTTTCTTCTTGAG . 112.0 44.0 91.0 0.0 . 95 . . . none . . PASS Atlas-SNP MAP2K5 5607 hgsc.bcm.edu hg19 15 67985904 67985904 + Missense_Mutation SNP G G T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . MAP2K5 NM_145160 exon15 c.G970T p.A324S TATATGGCGGTAA . 95.0 30.0 86.0 0.0 . 70 . . . none . . PASS Atlas-SNP RASGRF1 5923 hgsc.bcm.edu hg19 15 79254568 79254568 + Missense_Mutation SNP T T C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . RASGRF1 NM_002891 exon28 c.A3740G p.Y1247C AGTAAATATTGCG . 13.0 5.0 11.0 0.0 . 168 . . . none . . PASS Atlas-SNP MYH8 4626 hgsc.bcm.edu hg19 17 10312636 10312636 + Silent SNP A A T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . MYH8 NM_002472 exon16 c.T1857A p.T619T GGCTAGAGTCTTC . 147.0 77.0 124.0 0.0 . 346 . . . none . . PASS Atlas-SNP C19orf21 126353 hgsc.bcm.edu hg19 19 758211 758211 + Missense_Mutation SNP C C A novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . C19orf21 NM_173481 exon2 c.C1265A p.P422H TCCCACCTGATGC . 47.0 25.0 32.0 0.0 . 56 . . . none . . PASS Atlas-SNP TUBB4A 10382 hgsc.bcm.edu hg19 19 6501326 6501326 + Missense_Mutation SNP C C A novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . . NM_006087 exon3 c.G249T p.Q83H AAAGATCTGACCG . 53.0 27.0 65.0 0.0 . . . . . none . . PASS Atlas-SNP ZNF557 79230 hgsc.bcm.edu hg19 19 7083599 7083599 + Silent SNP T T C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . ZNF557 NM_001044387 exon8 c.T1137C p.S379S GTGCAGTGATTGT . 65.0 16.0 76.0 0.0 . 40 . . . none . . PASS Atlas-SNP SMARCA4 6597 hgsc.bcm.edu hg19 19 11135092 11135092 + Missense_Mutation SNP A A G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . SMARCA4 NM_003072 exon21 c.A3059G p.D1020G TGACTGATGGCTC . 66.0 21.0 77.0 0.0 . 502 . . . none . . PASS Atlas-SNP ZNF443 10224 hgsc.bcm.edu hg19 19 12541116 12541116 + Missense_Mutation SNP C C T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . ZNF443 NM_005815 exon4 c.G1870A p.A624T CAAATGCTTTCCC . 218.0 64.0 183.0 0.0 . 63 . . . none . . PASS Atlas-SNP RHPN2 85415 hgsc.bcm.edu hg19 19 33493859 33493859 + Missense_Mutation SNP C C T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd RHPN2,colon,carcinoma,0,1 RHPN2 NM_033103 exon8 c.G808A p.D270N TCATGTCGTAACT . 83.0 4.0 62.0 0.0 . 107 . . . none . . PASS Atlas-SNP DNMT3B 1789 hgsc.bcm.edu hg19 20 31374365 31374365 + Missense_Mutation SNP C C G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd DNMT3B_ENST00000201963,NS,carcinoma,0,2 DNMT3B NM_175850 exon5 c.C400G p.R134G TCCCCACGTTCCA . 123.0 54.0 114.0 0.0 . 196 . . . none . . PASS Atlas-SNP MMP24 10893 hgsc.bcm.edu hg19 20 33851627 33851627 + Missense_Mutation SNP T T C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . MMP24 NM_006690 exon5 c.T851C p.L284P ATGAGCTGGGCCA . 23.0 10.0 16.0 0.0 . 35 . . . none . . PASS Atlas-SNP FAM217B 63939 hgsc.bcm.edu hg19 20 58519969 58519969 + Missense_Mutation SNP G G C rs377074437 alternate_allele TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . . NM_022106 exon4 c.G971C p.R324P ACATTCGAGTTCC . 98.0 4.0 76.0 0.0 . . . . . alt . . PASS Atlas-SNP KRTAP10-12 386685 hgsc.bcm.edu hg19 21 46117131 46117131 + Silent SNP C C T rs372249758 TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . KRTAP10-12 NM_198699 exon1 c.C15T p.S5S CTGCTCCAGCGAC . 188.0 70.0 217.0 0.0 . 21 . . . weak . . PASS Atlas-SNP C21orf58 54058 hgsc.bcm.edu hg19 21 47731374 47731374 + Missense_Mutation SNP C C A novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . C21orf58 NM_058180 exon6 c.G717T p.K239N ACCTTCCTTAATA . 19.0 9.0 22.0 0.0 . 25 . . . none . . PASS Atlas-SNP ZNRF3 84133 hgsc.bcm.edu hg19 22 29445939 29445939 + Silent SNP C C G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . ZNRF3 NM_001206998 exon8 c.C1770G p.L590L CTCCCTCAGCAGC . 235.0 81.0 220.0 0.0 . 75 . . . none . . PASS Atlas-SNP SH3KBP1 30011 hgsc.bcm.edu hg19 X 19626146 19626146 + Silent SNP G G T novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . SH3KBP1 NM_031892 exon9 c.C915A p.G305G CCACCAGCCTACG . 50.0 40.0 38.0 0.0 . 96 . . . none . . PASS Atlas-SNP DCAF12L1 139170 hgsc.bcm.edu hg19 X 125685498 125685498 + Missense_Mutation SNP A A C novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . DCAF12L1 NM_178470 exon1 c.T1094G p.V365G GTGCCCACAGTGA . 66.0 55.0 48.0 0.0 . 135 . . . none . . PASS Atlas-SNP SRRT 51593 hgsc.bcm.edu hg19 7 100485469 100485473 + Frame_Shift_Del DEL GCCCC GCCCC - novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 GCCCC GCCCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . SRRT NM_001128853 exon17 c.2314_2318del p.772_773del . . 224.0 18.0 107.0 0.0 . 108 . 0.0803571 0 none . . PASS Atlas-INDEL SIGLEC11 114132 hgsc.bcm.edu hg19 19 50463980 50463980 + Frame_Shift_Del DEL T T - novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . SIGLEC11 NM_001135163 exon2 c.290delT p.M97fs . . 124.0 11.0 116.0 0.0 . 70 . 0.0887097 0 none . . PASS Atlas-INDEL RFPL3 10738 hgsc.bcm.edu hg19 22 32754385 32754386 + Frame_Shift_Del DEL GC GC - novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 GC GC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . RFPL3 NM_001098535 exon1 c.326_327del p.109_109del . . 184.0 72.0 174.0 0.0 . 91 . 0.391304 0 none . . PASS Atlas-INDEL AIM1 202 hgsc.bcm.edu hg19 6 106967843 106967843 + Frame_Shift_Del DEL T T - novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . AIM1 NM_001624 exon2 c.1535delA p.N512fs . . 150.0 60.0 120.0 0.0 . 161 . 0.4 0 none . . PASS Atlas-INDEL ZNF814 730051 hgsc.bcm.edu hg19 19 58386399 58386399 + Frame_Shift_Del DEL T T - novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . ZNF814 NM_001144989 exon3 c.360delC p.H120fs . . 118.0 16.0 109.0 0.0 . 93 . 0.135593 0 none . . PASS Atlas-INDEL SGK2 10110 hgsc.bcm.edu hg19 20 42203603 42203603 + Frame_Shift_Del DEL T T - novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . SGK2 NM_016276 exon9 c.831delG p.W277fs . . 48.0 21.0 52.0 0.0 . 50 . 0.4375 0 none . . PASS Atlas-INDEL IL36RN 26525 hgsc.bcm.edu hg19 2 113820191 113820191 + Frame_Shift_Del DEL G G - novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . IL36RN NM_173170 exon5 c.404delA p.Q135fs . . 71.0 18.0 101.0 0.0 . 15 . 0.253521 0 none . . PASS Atlas-INDEL ADTRP 84830 hgsc.bcm.edu hg19 6 11723657 11723657 + Frame_Shift_Del DEL C C - novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd .,1 ADTRP NM_001143948 exon6 c.638delC p.A213fs . . 259.0 92.0 246.0 0.0 . 3 . 0.355212 0 none . . PASS Atlas-INDEL PC 5091 hgsc.bcm.edu hg19 11 66617140 66617141 + Frame_Shift_Ins INS - - G novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . PC NM_000920 exon20 c.3089_3090insC p.L1030fs . . 77.0 18.0 77.0 0.0 . 116 . 0.233766 0 none . . PASS Atlas-INDEL ATP2A2 488 hgsc.bcm.edu hg19 12 110765478 110765478 + Frame_Shift_Del DEL C C - novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . ATP2A2 NM_170665 exon8 c.750delG p.Q250fs . . 346.0 90.0 237.0 0.0 . 78 . 0.260116 0 none . . PASS Atlas-INDEL EP300 2033 hgsc.bcm.edu hg19 22 41574164 41574176 + Frame_Shift_Del DEL CACAGCAGCAACT CACAGCAGCAACT - novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 CACAGCAGCAACT CACAGCAGCAACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . EP300 NM_001429 exon31 c.6448_6460del p.2150_2154del . . 106.0 42.0 120.0 0.0 . 367 . 0.396226 0 none . . PASS Atlas-INDEL SOBP 55084 hgsc.bcm.edu hg19 6 107827597 107827597 + Frame_Shift_Del DEL T T - novel TCGA-DW-7840-01A-11D-2136-08 TCGA-DW-7840-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9967ba89-7c82-4192-b2fa-ff7dfd8e1d38 0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd . SOBP NM_018013 exon3 c.386delC p.P129fs . . 300.0 100.0 256.0 0.0 . 53 . 0.333333 0 none . . PASS Atlas-INDEL