Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
NUDC	10726	hgsc.bcm.edu	hg19	1	27271886	27271886	+	Silent	SNP	T	T	C	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	NUDC	NM_006600	exon7	c.T747C	p.N249N	GATCAATAAGATG	.	44.0	19.0	51.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
DUSP23	54935	hgsc.bcm.edu	hg19	1	159752041	159752041	+	Silent	SNP	T	T	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	DUSP23	NM_017823	exon3	c.T366A	p.I122I	TGCCATTGCTGAA	.	80.0	40.0	92.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
TOMM40L	84134	hgsc.bcm.edu	hg19	1	161197494	161197494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	TOMM40L	NM_032174	exon5	c.G345T	p.L115F	CCTCTTGGCAGAG	.	66.0	35.0	87.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	hg19	1	201013478	201013478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	CACNA1S	NM_000069	exon39	c.C4775T	p.A1592V	TCCATCGCAGCCT	.	96.0	43.0	90.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
ERO1LB	56605	hgsc.bcm.edu	hg19	1	236385229	236385229	+	Silent	SNP	A	A	G	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	ERO1LB	NM_019891	exon14	c.T1204C	p.L402L	CCTGTAATTTTCC	.	39.0	22.0	78.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
OR2AK2	391191	hgsc.bcm.edu	hg19	1	248129596	248129596	+	Silent	SNP	A	A	G	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	OR2AK2	NM_001004491	exon1	c.A963G	p.G321G	GTTGGGATATTGG	.	69.0	31.0	113.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
LTBP1	4052	hgsc.bcm.edu	hg19	2	33246142	33246142	+	Silent	SNP	T	T	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	LTBP1	NM_206943	exon3	c.T732A	p.P244P	GGGCCCTCCTGAG	.	169.0	60.0	219.0	0.0	.	317	.	.	.	none	.	.	PASS	Atlas-SNP
LYG2	254773	hgsc.bcm.edu	hg19	2	99861757	99861757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	LYG2	NM_175735	exon4	c.G349T	p.D117Y	TGTGGTCCCAGCC	.	102.0	42.0	126.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
TNS1	7145	hgsc.bcm.edu	hg19	2	218749811	218749811	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	TNS1	NM_022648	exon14	c.T818A	p.I273N	TCATGGATGGCAC	.	88.0	39.0	104.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
RBM5	10181	hgsc.bcm.edu	hg19	3	50129618	50129618	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	RBM5	NM_005778	exon3	c.T160G	p.Y54D	GATGACTACCGAG	.	64.0	36.0	56.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
NPY2R	4887	hgsc.bcm.edu	hg19	4	156136064	156136064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	NPY2R	NM_000910	exon2	c.T973C	p.Y325H	CTTCTCTATGGCT	.	87.0	37.0	153.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
KCNQ5	56479	hgsc.bcm.edu	hg19	6	73904447	73904447	+	Silent	SNP	C	C	T	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	KCNQ5	NM_001160133	exon15	c.C2166T	p.Y722Y	TTTCTACGCGCTT	.	174.0	80.0	205.0	0.0	.	153	.	.	.	none	.	.	PASS	Atlas-SNP
SLC26A4	5172	hgsc.bcm.edu	hg19	7	107335130	107335130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	SLC26A4	NM_000441	exon12	c.C1406A	p.P469H	ACATTCCTCGTCT	.	124.0	79.0	107.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
ADAM32	203102	hgsc.bcm.edu	hg19	8	39068760	39068760	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	ADAM32	NM_145004	exon12	c.C1150T	p.Q384X	AAGCCACAAATGC	.	17.0	11.0	24.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113697852	113697852	+	Silent	SNP	T	T	G	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	CSMD3	NM_198123	exon15	c.A2265C	p.P755P	GCTCCCTGGATCA	.	106.0	52.0	158.0	0.0	.	2325	.	.	.	none	.	.	PASS	Atlas-SNP
MRC1	4360	hgsc.bcm.edu	hg19	10	17891759	17891759	+	Silent	SNP	C	C	T	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	MRC1	NM_002438	exon7	c.C1240T	p.L414L	TCCCAGCTAGGAT	.	243.0	92.0	318.0	1.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
PPP3CB	5532	hgsc.bcm.edu	hg19	10	75214208	75214208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	PPP3CB	NM_001142354	exon10	c.A1148G	p.D383G	TCATCATCAGAGC	.	88.0	28.0	156.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62298802	62298802	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	AHNAK	NM_001620	exon5	c.T3087G	p.I1029M	TGCAGAAATGTCC	.	77.0	39.0	141.0	0.0	.	532	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM52B	120939	hgsc.bcm.edu	hg19	12	10342575	10342575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	.	NM_153022	exon4	c.T328C	p.S110P	CTGCCCTCCTCTT	.	53.0	30.0	75.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KRT3	3850	hgsc.bcm.edu	hg19	12	53188038	53188038	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	KRT3	NM_057088	exon2	c.C723G	p.I241M	GCCTGAGATGGAA	.	139.0	56.0	171.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
EFS	10278	hgsc.bcm.edu	hg19	14	23830017	23830017	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	EFS	NM_005864	exon2	c.A44T	p.D15V	GTGTTGTCATACA	.	67.0	23.0	51.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64587724	64587724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	SYNE2	NM_182914	exon68	c.C13103T	p.S4368F	TGGAATCCATTGT	.	45.0	24.0	110.0	0.0	.	577	.	.	.	none	.	.	PASS	Atlas-SNP
SMG1	23049	hgsc.bcm.edu	hg19	16	18937327	18937327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	SMG1	NM_015092	exon1	c.G37A	p.G13S	CGCCGCCGCTGCT	.	38.0	5.0	13.0	0.0	.	401	.	.	.	none	.	.	PASS	Atlas-SNP
POLR3E	55718	hgsc.bcm.edu	hg19	16	22324995	22324995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	POLR3E	NM_001258033	exon7	c.C419A	p.S140Y	GCTTCTCCTACCT	.	119.0	75.0	78.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
SNTB2	6645	hgsc.bcm.edu	hg19	16	69294139	69294139	+	Silent	SNP	G	G	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	SNTB2	NM_006750	exon3	c.G981A	p.K327K	GGTGAAGCATATT	.	71.0	44.0	72.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
SLC7A5	8140	hgsc.bcm.edu	hg19	16	87868146	87868146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	SLC7A5,colon,carcinoma,0,1	SLC7A5	NM_003486	exon9	c.G1342A	p.A448T	AGACGGCGATCAG	.	21.0	10.0	10.0	1.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1C	4641	hgsc.bcm.edu	hg19	17	1386297	1386297	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	MYO1C	NM_001080779	exon4	c.C404G	p.A135G	ATCACAGCCTGGT	.	58.0	8.0	38.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP1	22861	hgsc.bcm.edu	hg19	17	5461735	5461735	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	NLRP1	NM_033007	exon4	c.A2281T	p.S761C	GGCGGCTGAATTT	.	116.0	33.0	123.0	0.0	.	358	.	.	.	none	.	.	PASS	Atlas-SNP
SUPT6H	6830	hgsc.bcm.edu	hg19	17	27005892	27005892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	SUPT6H	NM_003170	exon11	c.G1260A	p.M420I	GAAGATGCAGGCT	.	162.0	99.0	152.0	0.0	.	165	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	hg19	17	39240908	39240908	+	Silent	SNP	T	T	C	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	KRTAP4-7,NS,carcinoma,0,2	KRTAP4-7	NM_033061	exon1	c.T450C	p.C150C	GTGCTGTGCCTCC	.	24.0	5.0	18.0	2.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC59	55379	hgsc.bcm.edu	hg19	17	48462617	48462617	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	LRRC59,NS,carcinoma,0,1	LRRC59	NM_018509	exon6	c.A538T	p.K180X	CTTCCTTAGCTCG	.	231.0	64.0	206.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
METTL4	64863	hgsc.bcm.edu	hg19	18	2552727	2552727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	METTL4	NM_022840	exon5	c.C866T	p.P289L	TGCCATGGTGGAT	.	22.0	13.0	44.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
DUS3L	56931	hgsc.bcm.edu	hg19	19	5789679	5789679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	DUS3L	NM_020175	exon3	c.G439T	p.V147L	GCCCCACGTCGTG	.	28.0	9.0	24.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF559	84527	hgsc.bcm.edu	hg19	19	9452847	9452847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	ZNF559	NM_001202406	exon6	c.C912A	p.F304L	AAAATTCTATGAA	.	54.0	26.0	126.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF559	84527	hgsc.bcm.edu	hg19	19	9452848	9452848	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	ZNF559	NM_001202406	exon6	c.T913A	p.Y305N	AAATTCTATGAAT	.	53.0	25.0	127.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF844	284391	hgsc.bcm.edu	hg19	19	12187475	12187475	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	ZNF844,NS,carcinoma,0,6	ZNF844	NM_001136501	exon4	c.C1540G	p.H514D	CCTTCACATCTGC	.	39.0	4.0	54.0	1.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
ACTN4	81	hgsc.bcm.edu	hg19	19	39219691	39219691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	ACTN4	NM_004924	exon20	c.T2474C	p.L825P	GCGGCCTTGTGAC	.	221.0	101.0	140.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF649	65251	hgsc.bcm.edu	hg19	19	52394736	52394736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	ZNF649,NS,carcinoma,0,2	ZNF649	NM_023074	exon5	c.A653G	p.K218R	CTGTACTTCTTGT	.	71.0	3.0	158.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
GAB4	128954	hgsc.bcm.edu	hg19	22	17444670	17444670	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	GAB4	NM_001037814	exon9	c.C1526G	p.P509R	CTCGGCGGGGCTG	.	65.0	22.0	71.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
SEC14L2	23541	hgsc.bcm.edu	hg19	22	30805245	30805245	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	SEC14L2	NM_012429	exon6	c.A493C	p.K165Q	CTCTGGAAGCCTG	.	60.0	32.0	76.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
ARSE	415	hgsc.bcm.edu	hg19	X	2867409	2867409	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	ARSE	NM_000047	exon6	c.C790T	p.Q264X	TGGGCTGCTCCGT	.	42.0	38.0	70.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
ALS2	57679	hgsc.bcm.edu	hg19	2	202606404	202606404	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	ALS2	NM_020919	exon11	c.2345delA	p.Y782fs	.	.	39.0	17.0	78.0	0.0	.	172	.	0.435897	0	none	.	.	PASS	Atlas-Indel,Pindel
FOXN1	8456	hgsc.bcm.edu	hg19	17	26864406	26864406	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	FOXN1	NM_003593	exon8	c.1898delG	p.G633fs	.	.	100.0	24.0	65.0	0.0	.	51	.	0.24	0	none	.	.	PASS	Atlas-Indel,Pindel
CSMD3	114788	hgsc.bcm.edu	hg19	8	113697849	113697849	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	CSMD3	NM_198123	exon15	c.2269delA	p.S757fs	.	.	104.0	51.0	148.0	0.0	.	2325	.	0.490385	0	none	.	.	PASS	Atlas-INDEL
NOLC1	9221	hgsc.bcm.edu	hg19	10	103916834	103916834	+	Splice_Site	DEL	A	A	-	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	.	NOLC1	NM_004741	exon2	c.176+2A>-	.	.	.	155.0	62.0	275.0	0.0	.	61	.	0.4	0	none	.	.	PASS	Atlas-Indel,Pindel
CSMD3	114788	hgsc.bcm.edu	hg19	8	113697851	113697852	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	CSMD3_ENST00000343508,right_upper_lobe,carcinoma,+1,1	CSMD3	NM_198123	exon15	c.2266_2267del	p.756_756del	.	.	107.0	36.0	155.0	0.0	.	2325	.	0.336	.	none	.	.	PASS	Pindel
ZNF395	55893	hgsc.bcm.edu	hg19	8	28210808	28210809	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DW-7836-01A-11D-2136-08	TCGA-DW-7836-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1cca814c-40fe-426c-b494-86a634031f4c	22c58020-f91d-4657-99ae-53bd869ee210	ZNF395,rectum,carcinoma,0,2	ZNF395	NM_018660	exon5	c.701_702insC	p.H234fs	.	.	52.0	16.0	42.0	0.0	.	54	.	0.308	.	none	.	.	PASS	Pindel