Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
EPHA8	2046	hgsc.bcm.edu	hg19	1	22903099	22903099	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	EPHA8	NM_020526	exon3	c.G549T	p.L183L	CTACCTGGCCTTC	.	69.0	25.0	74.0	0.0	.	221	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF619	285267	hgsc.bcm.edu	hg19	3	40529349	40529349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ZNF619	NM_001145082	exon6	c.C1468T	p.H490Y	CGAGTTCACACTG	.	115.0	64.0	84.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
RPL29	6159	hgsc.bcm.edu	hg19	3	52029445	52029445	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	RPL29	NM_000992	exon2	c.C33T	p.N11N	ACACTGGTTGTGT	.	116.0	26.0	106.0	0.0	.	8	.	.	.	none	.	.	PASS	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121168266	121168266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	POLQ	NM_199420	exon26	c.A7160G	p.Y2387C	ATCCCATAGCAAA	.	395.0	195.0	343.0	1.0	.	273	.	.	.	none	.	.	PASS	Atlas-SNP
KPNA4	3840	hgsc.bcm.edu	hg19	3	160249255	160249255	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	KPNA4	NM_002268	exon6	c.T378C	p.D126D	CTTGTCATCTCTT	.	235.0	128.0	182.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
DGKG	1608	hgsc.bcm.edu	hg19	3	186006591	186006591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	DGKG	NM_001346	exon6	c.C452T	p.S151F	CTTGAAGACCGAG	.	420.0	97.0	346.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
C7orf57	136288	hgsc.bcm.edu	hg19	7	48081007	48081007	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	C7orf57	NM_001100159	exon3	c.C132A	p.L44L	AGGTCTCAGCAAT	.	100.0	46.0	88.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
ST7	7982	hgsc.bcm.edu	hg19	7	116863027	116863027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ST7	NM_021908	exon16	c.A1751G	p.Q584R	ATTTCCAAAACTG	.	84.0	42.0	66.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
POP1	10940	hgsc.bcm.edu	hg19	8	99161148	99161148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	POP1	NM_001145860	exon13	c.G1816A	p.V606M	GGAAAAGTGACTG	.	47.0	16.0	52.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
NAA16	79612	hgsc.bcm.edu	hg19	13	41905433	41905433	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.,1	NAA16	NM_001110798	exon8	c.A835T	p.I279F	CTTCAAATTTATG	.	148.0	47.0	187.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20841196	20841196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	TEP1	NM_007110	exon48	c.G6925A	p.E2309K	TAGCTTCCTGCCA	.	103.0	41.0	115.0	0.0	.	224	.	.	.	none	.	.	PASS	Atlas-SNP
NDNL2	56160	hgsc.bcm.edu	hg19	15	29561225	29561225	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	NDNL2,colon,carcinoma,0,1	NDNL2	NM_138704	exon1	c.C685G	p.R229G	GCTGTCGCACAAA	.	134.0	50.0	149.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP11A	9824	hgsc.bcm.edu	hg19	15	32928906	32928906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ARHGAP11A	NM_014783	exon12	c.T1932G	p.F644L	TCTATTTGAAACT	.	46.0	25.0	59.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
TMC5	79838	hgsc.bcm.edu	hg19	16	19490814	19490814	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	TMC5	NM_001105249	exon14	c.C2231G	p.S744C	TGTTCTCTTTAGT	.	389.0	116.0	344.0	1.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
C16orf70	80262	hgsc.bcm.edu	hg19	16	67168085	67168085	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	C16orf70	NM_025187	exon7	c.T465C	p.H155H	TGCCCATGGCCTG	.	175.0	52.0	109.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
ERAL1	26284	hgsc.bcm.edu	hg19	17	27182278	27182278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ERAL1	NM_005702	exon1	c.T226C	p.F76L	CTCGGATTCTCTC	.	95.0	56.0	85.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
SYNGR2	9144	hgsc.bcm.edu	hg19	17	76167099	76167099	+	Missense_Mutation	SNP	C	C	A	rs147752279	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	SYNGR2	NM_004710	exon2	c.C301A	p.R101S	ACTGACCGCAAGT	.	90.0	7.0	70.0	0.0	.	17	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
ZNF559	84527	hgsc.bcm.edu	hg19	19	9453288	9453288	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ZNF559	NM_001202406	exon6	c.A1353G	p.G451G	ATGTGGAAAAGCC	.	74.0	28.0	72.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF559	84527	hgsc.bcm.edu	hg19	19	9453293	9453293	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ZNF559	NM_001202406	exon6	c.C1358G	p.A453G	GAAAAGCCTTTAT	.	74.0	26.0	71.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
ZNRF3	84133	hgsc.bcm.edu	hg19	22	29445350	29445350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ZNRF3	NM_001206998	exon8	c.T1181C	p.V394A	ACCCCGTCACCTT	.	55.0	15.0	69.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
BEND2	139105	hgsc.bcm.edu	hg19	X	18195783	18195783	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	BEND2	NM_153346	exon10	c.T1536A	p.I512I	GAACAAAATACGA	.	291.0	207.0	265.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
LRBA	987	hgsc.bcm.edu	hg19	4	151271258	151271259	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	LRBA	NM_006726	exon49	c.7281_7282insAT	p.I2427fs	.	.	70.0	12.0	81.0	0.0	.	253	.	0.171429	0	none	.	.	PASS	Atlas-INDEL
MYO6	4646	hgsc.bcm.edu	hg19	6	76542650	76542650	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	MYO6	NM_004999	exon6	c.482delC	p.T161fs	.	.	140.0	43.0	107.0	0.0	.	124	.	0.307143	0	none	.	.	PASS	Atlas-INDEL
HSPA1B	3304	hgsc.bcm.edu	hg19	6	31796449	31796450	+	Frame_Shift_Ins	INS	-	-	CC	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	HSPA1B	NM_005346	exon1	c.722_723insCC	p.F241fs	.	.	96.0	14.0	111.0	0.0	.	5	.	0.145833	0	none	.	.	PASS	Atlas-INDEL
HSPA1A	3303	hgsc.bcm.edu	hg19	6	31784255	31784256	+	Frame_Shift_Ins	INS	-	-	CC	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	HSPA1A	NM_005345	exon1	c.722_723insCC	p.F241fs	.	.	116.0	13.0	132.0	0.0	.	9	.	0.112069	0	none	.	.	PASS	Atlas-INDEL
KBTBD4	55709	hgsc.bcm.edu	hg19	11	47597183	47597183	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	KBTBD4,face,carcinoma,0,1	KBTBD4	NM_018095	exon3	c.707delG	p.R236fs	.	.	176.0	44.0	182.0	0.0	.	55	.	0.25	0	none	.	.	PASS	Atlas-INDEL
MUL1	79594	hgsc.bcm.edu	hg19	1	20827614	20827614	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	MUL1	NM_024544	exon4	c.629delT	p.L210fs	.	.	142.0	45.0	145.0	0.0	.	34	.	0.316901	0	none	.	.	PASS	Atlas-INDEL
NSD1	64324	hgsc.bcm.edu	hg19	5	176637880	176637880	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	NSD1	NM_022455	exon5	c.2479delA	p.I827fs	.	.	49.0	13.0	61.0	0.0	.	416	.	0.265306	0	none	.	.	PASS	Atlas-INDEL