Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm ZYG11B 79699 hgsc.bcm.edu hg19 1 53287196 53287196 + Silent SNP T T C novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . ZYG11B NM_024646 exon14 c.T2130C p.H710H TCCCCATGTCCAA . 75.0 35.0 71.0 0.0 . 61 . . . none . . PASS Atlas-SNP PYCR2 29920 hgsc.bcm.edu hg19 1 226109611 226109611 + Missense_Mutation SNP C C G novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . PYCR2 NM_013328 exon4 c.G487C p.E163Q CCTCTTCCACCTC . 35.0 7.0 31.0 0.0 . 13 . . . none . . PASS Atlas-SNP DLX1 1745 hgsc.bcm.edu hg19 2 172950598 172950598 + Silent SNP C C A novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . DLX1 NM_178120 exon1 c.C193A p.R65R TTCTCCCGACCGC . 163.0 8.0 186.0 0.0 . 23 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179443931 179443931 + Missense_Mutation SNP A A G novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . TTN NM_001267550 exon320 c.T67826C p.I22609T TACACTATAAGAG . 199.0 45.0 204.0 0.0 . 18412 . . . none . . PASS Atlas-SNP COL7A1 1294 hgsc.bcm.edu hg19 3 48602253 48602253 + Silent SNP G G A novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . COL7A1 NM_000094 exon117 c.C8781T p.R2927R GCAGCGGCGCTCG . 56.0 26.0 55.0 0.0 . 320 . . . none . . PASS Atlas-SNP RBM15B 29890 hgsc.bcm.edu hg19 3 51431021 51431021 + Missense_Mutation SNP A A T novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . RBM15B NM_013286 exon1 c.A2191T p.S731C AAAAACAGCTGCT . 104.0 10.0 126.0 0.0 . 47 . . . none . . PASS Atlas-SNP WDR52 55779 hgsc.bcm.edu hg19 3 113128125 113128125 + Missense_Mutation SNP C C A novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . WDR52 NM_001164496 exon7 c.G718T p.G240C AGTTACCGCTGTA . 136.0 7.0 141.0 0.0 . 151 . . . none . . PASS Atlas-SNP UGT2A1 10941 hgsc.bcm.edu hg19 4 70513331 70513331 + Missense_Mutation SNP T T C novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . UGT2A1 NM_001252274 exon2 c.A32G p.Q11R CTTATCTGAAGGG . 45.0 13.0 40.0 0.0 . 131 . . . none . . PASS Atlas-SNP SLC4A4 8671 hgsc.bcm.edu hg19 4 72412140 72412140 + Missense_Mutation SNP C C A novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . SLC4A4 NM_001098484 exon19 c.C2516A p.P839Q CTCTTCCGTGGTA . 184.0 8.0 169.0 0.0 . 269 . . . none . . PASS Atlas-SNP C4orf26 152816 hgsc.bcm.edu hg19 4 76489342 76489342 + Missense_Mutation SNP C C T novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 C4orf26_ENST00000435974,rectum,carcinoma,-1,2 C4orf26 NM_001206981 exon3 c.C130T p.R44C TATTTACGCCTCC . 106.0 48.0 114.0 0.0 . 24 . . . none . . PASS Atlas-SNP UGT3A2 167127 hgsc.bcm.edu hg19 5 36035804 36035804 + Missense_Mutation SNP G G A novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . UGT3A2 NM_174914 exon7 c.C1568T p.T523I CCTTATGTCTCCT . 61.0 23.0 64.0 0.0 . 117 . . . none . . PASS Atlas-SNP DDX4 54514 hgsc.bcm.edu hg19 5 55088515 55088515 + Missense_Mutation SNP G G T novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 DDX4_ENST00000511853,NS,carcinoma,0,3 DDX4 NM_024415 exon17 c.G1349T p.R450L CTGATCGCATGTT . 63.0 27.0 78.0 0.0 . 194 . . . none . . PASS Atlas-SNP TNPO3 23534 hgsc.bcm.edu hg19 7 128641219 128641219 + Missense_Mutation SNP T T C novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . TNPO3 NM_012470 exon6 c.A766G p.I256V TCTCAATGGCATA . 328.0 120.0 348.0 0.0 . 148 . . . none . . PASS Atlas-SNP RBP3 5949 hgsc.bcm.edu hg19 10 48390462 48390462 + Missense_Mutation SNP G G T rs147118201 byfrequency;alternate_allele TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . RBP3 NM_002900 exon1 c.C416A p.P139Q TGGCCCGGGACGC . 149.0 8.0 167.0 0.0 . 152 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP DUSP13 51207 hgsc.bcm.edu hg19 10 76868897 76868897 + Missense_Mutation SNP G G A novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . DUSP13 NM_001007272 exon1 c.C19T p.P7S GCTCTGGGAGAGA . 58.0 25.0 49.0 0.0 . 82 . . . none . . PASS Atlas-SNP ATM 472 hgsc.bcm.edu hg19 11 108206609 108206609 + Missense_Mutation SNP A A C novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . ATM NM_000051 exon56 c.A8189C p.Q2730P TGCAACAGGTCTT . 57.0 20.0 73.0 0.0 . 1657 . . . none . . PASS Atlas-SNP C11orf1 64776 hgsc.bcm.edu hg19 11 111753250 111753250 + Silent SNP C C T novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . C11orf1 NM_022761 exon2 c.C204T p.T68T CCGTACCCTGATG . 83.0 30.0 61.0 0.0 . 15 . . . none . . PASS Atlas-SNP FKBP11 51303 hgsc.bcm.edu hg19 12 49319118 49319118 + Missense_Mutation SNP C C G novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . FKBP11 NM_016594 exon1 c.G94C p.E32Q GACTTTCGGTTTC . 40.0 14.0 51.0 0.0 . 12 . . . none . . PASS Atlas-SNP OTOGL 283310 hgsc.bcm.edu hg19 12 80626779 80626779 + Missense_Mutation SNP G G A novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . OTOGL NM_173591 exon8 c.G692A p.G231E TATCTGGGATCTA . 80.0 34.0 90.0 0.0 . 235 . . . none . . PASS Atlas-SNP TCL1B 9623 hgsc.bcm.edu hg19 14 96152848 96152848 + Missense_Mutation SNP G G A novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . TCL1B NM_004918 exon1 c.G44A p.R15H CTGGCCGTCTGTG . 128.0 57.0 134.0 0.0 . 30 . . . none . . PASS Atlas-SNP HERC1 8925 hgsc.bcm.edu hg19 15 63978661 63978661 + Missense_Mutation SNP T T C novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . HERC1 NM_003922 exon34 c.A6122G p.Q2041R CAACACTGAGCTT . 299.0 125.0 333.0 0.0 . 624 . . . none . . PASS Atlas-SNP NFAT5 10725 hgsc.bcm.edu hg19 16 69718811 69718811 + Missense_Mutation SNP T T C novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . NFAT5 NM_138713 exon11 c.T1712C p.V571A TGAATGTAAATGT . 98.0 5.0 91.0 0.0 . 184 . . . none . . PASS Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11520831 11520831 + Silent SNP G G C novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . DNAH9 NM_001372 exon5 c.G1008C p.R336R GCTGCGGCCCCTG . 60.0 17.0 73.0 0.0 . 695 . . . none . . PASS Atlas-SNP DDX5 1655 hgsc.bcm.edu hg19 17 62498660 62498660 + Missense_Mutation SNP G G C novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . DDX5 NM_004396 exon9 c.C991G p.R331G TTAGACGAATAAG . 85.0 4.0 81.0 0.0 . 101 . . . none . . PASS Atlas-SNP RALBP1 10928 hgsc.bcm.edu hg19 18 9535719 9535719 + Missense_Mutation SNP C C G novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . RALBP1 NM_006788 exon10 c.C1752G p.I584M GGCCATCATCGAG . 18.0 10.0 29.0 0.0 . 48 . . . none . . PASS Atlas-SNP ADAMTS10 81794 hgsc.bcm.edu hg19 19 8661946 8661946 + Missense_Mutation SNP A A C novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . ADAMTS10 NM_030957 exon8 c.T965G p.V322G TGGTTCACGATGG . 98.0 39.0 108.0 0.0 . 132 . . . none . . PASS Atlas-SNP SIPA1L3 23094 hgsc.bcm.edu hg19 19 38621327 38621327 + Missense_Mutation SNP C C G novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . SIPA1L3 NM_015073 exon10 c.C3058G p.H1020D CTGACCCACGACC . 88.0 4.0 111.0 0.0 . 150 . . . none . . PASS Atlas-SNP ZNF404 342908 hgsc.bcm.edu hg19 19 44377748 44377748 + Missense_Mutation SNP C C G novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . ZNF404 NM_001033719 exon2 c.G609C p.Q203H AATTATCTGATGC . 151.0 60.0 174.0 0.0 . 46 . . . none . . PASS Atlas-SNP ZNF578 147660 hgsc.bcm.edu hg19 19 53014896 53014896 + Missense_Mutation SNP A A C novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . . NM_001099694 exon6 c.A1262C p.H421P GACTTCATACTGG . 153.0 10.0 149.0 0.0 . . . . . none . . PASS Atlas-SNP CHD6 84181 hgsc.bcm.edu hg19 20 40053940 40053940 + Missense_Mutation SNP G G C novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . CHD6 NM_032221 exon29 c.C4224G p.C1408W GCGGTTGCAGCGC . 77.0 4.0 88.0 0.0 . 312 . . . none . . PASS Atlas-SNP ALPK3 57538 hgsc.bcm.edu hg19 15 85400008 85400009 + Frame_Shift_Ins INS - - A novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . ALPK3 NM_020778 exon6 c.2645_2646insA p.I882fs . . 51.0 26.0 48.0 0.0 . 289 . 0.509804 0 none . . PASS Atlas-INDEL ABCA6 23460 hgsc.bcm.edu hg19 17 67081860 67081863 + Splice_Site DEL GAAA GAAA - novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 GAAA GAAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . ABCA6 . . . . . . 52.0 15.0 50.0 0.0 . 210 . 0.288462 0 none . . PASS Atlas-INDEL TARBP2 6895 hgsc.bcm.edu hg19 12 53895924 53895925 + Frame_Shift_Ins INS - - T novel TCGA-BQ-7056-01A-11D-1961-08 TCGA-BQ-7056-11A-01D-1961-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8030657c-5a4c-49c4-a1c4-87344411c96f 5f202358-ec0a-45aa-b346-79d9e4f5b268 . TARBP2 NM_134323 exon2 c.179_180insT p.P60fs . . 67.0 25.0 67.0 0.0 . 35 . 0.373134 0 none . . PASS Atlas-INDEL