Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TGFBRAP1	9392	hgsc.bcm.edu	hg19	2	105886051	105886051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	TGFBRAP1	NM_004257	exon11	c.C2084T	p.A695V	TCGGCCGCTGCAA	.	35.0	6.0	45.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
DEFB114	245928	hgsc.bcm.edu	hg19	6	49931770	49931770	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	DEFB114	NM_001037499	exon1	c.C49T	p.L17L	CTGGTAGAATGAA	.	60.0	11.0	71.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
SEPT7	989	hgsc.bcm.edu	hg19	7	35930362	35930362	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	SEPT7,NS,carcinoma,0,3	SEPT7	NM_001011553	exon10	c.T954C	p.Y318Y	GACTTATAATGGA	.	48.0	3.0	29.0	1.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
CRY1	1407	hgsc.bcm.edu	hg19	12	107399011	107399011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	CRY1	NM_004075	exon3	c.A283G	p.K95E	AAAGTTTAGTAAT	.	167.0	64.0	149.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
PTPN11	5781	hgsc.bcm.edu	hg19	12	112892407	112892407	+	Missense_Mutation	SNP	T	T	G	rs79068130	bycluster	TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	PTPN11,NS,carcinoma,0,1	PTPN11	NM_080601	exon5	c.T565G	p.S189A	TTTGATTCTTTGA	.	48.0	3.0	56.0	1.0	.	623	.	.	.	weak	T|0.500;G|0.500	0.500	PASS	Atlas-SNP
SYT3	84258	hgsc.bcm.edu	hg19	19	51135675	51135675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	SYT3	NM_032298	exon2	c.C542T	p.P181L	TGGCTCGGTTTGA	.	74.0	23.0	71.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF304	57343	hgsc.bcm.edu	hg19	19	57869057	57869057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	ZNF304	NM_020657	exon3	c.G1820A	p.R607K	ACCAGAGGGTTCA	.	106.0	23.0	90.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC71	64925	hgsc.bcm.edu	hg19	3	49200861	49200862	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	CCDC71	NM_022903	exon2	c.781_782del	p.261_261del	.	.	152.0	43.0	194.0	0.0	.	33	.	0.282895	0	none	.	.	PASS	Atlas-INDEL