Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
SRSF4	6429	hgsc.bcm.edu	hg19	1	29475685	29475685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	SRSF4,colon,carcinoma,0,1	SRSF4	NM_005626	exon6	c.G722A	p.R241Q	TTGCTCCGGCTCC	.	162.0	15.0	200.0	1.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF691	51058	hgsc.bcm.edu	hg19	1	43317094	43317094	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ZNF691	NM_001242739	exon4	c.C558A	p.L186L	AGACCTCACCACG	.	78.0	17.0	89.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
CACHD1	57685	hgsc.bcm.edu	hg19	1	65143946	65143946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CACHD1	NM_020925	exon23	c.G3044A	p.G1015E	TCGGGGGGATTGT	.	84.0	6.0	65.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
FMO1	2326	hgsc.bcm.edu	hg19	1	171247924	171247924	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	FMO1	NM_002021	exon5	c.A541T	p.I181L	CCAGATATATTTA	.	137.0	44.0	111.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
SUCO	51430	hgsc.bcm.edu	hg19	1	172558217	172558217	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	NM_014283	exon18	c.T1976G	p.L659R	ATTATCTTGTGTT	.	88.0	30.0	73.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM81	388730	hgsc.bcm.edu	hg19	1	205053045	205053045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	TMEM81	NM_203376	exon1	c.T404G	p.F135C	GGTTTGAAGACCT	.	139.0	32.0	119.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
NT5C1B	93034	hgsc.bcm.edu	hg19	2	18767651	18767651	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	NT5C1B	NM_001199087	exon4	c.C358G	p.Q120E	ATTCTTGTGATCC	.	104.0	11.0	104.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
CPO	130749	hgsc.bcm.edu	hg19	2	207827299	207827299	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CPO	NM_173077	exon7	c.C738T	p.Y246Y	ACCTTACGGCTAC	.	255.0	15.0	179.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
VHL	7428	hgsc.bcm.edu	hg19	3	10191506	10191506	+	Missense_Mutation	SNP	C	C	G	rs5030820	bycluster	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	VHL,NS,carcinoma,-1,1	VHL	NM_000551	exon3	c.C499G	p.R167G	GTTGTCCGGAGCC	.	58.0	24.0	47.0	0.0	.	2192	.	.	.	weak	C|1.000	.	PASS	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52443866	52443866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	BAP1,NS,carcinoma,0,3	BAP1	NM_004656	exon1	c.G29A	p.S10N	GGGTCGCTCTCCA	.	48.0	24.0	59.0	0.0	.	371	.	.	.	none	.	.	PASS	Atlas-SNP
HAUS3	79441	hgsc.bcm.edu	hg19	4	2242534	2242534	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	HAUS3	NM_024511	exon2	c.T140G	p.V47G	TCATTCACATTCC	.	153.0	13.0	168.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
TMPRSS11A	339967	hgsc.bcm.edu	hg19	4	68777129	68777129	+	Silent	SNP	C	C	T	rs376494815		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	TMPRSS11A	NM_182606	exon10	c.G1197A	p.K399K	CTTGTCCTTTTGA	.	176.0	9.0	150.0	0.0	.	74	.	.	.	weak	.	.	PASS	Atlas-SNP
ALPK1	80216	hgsc.bcm.edu	hg19	4	113333046	113333046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ALPK1	NM_001102406	exon5	c.G340A	p.V114M	TTCTTGGTGGACC	.	39.0	7.0	40.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123128292	123128292	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	KIAA1109	NM_015312	exon14	c.G1526C	p.S509T	GTGACAGTCCTCC	.	276.0	65.0	300.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
NIM1	0	hgsc.bcm.edu	hg19	5	43280172	43280172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	NM_153361	exon4	c.A652G	p.S218G	GGATTCAGCACAG	.	120.0	40.0	139.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
BDP1	55814	hgsc.bcm.edu	hg19	5	70800508	70800508	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	BDP1	NM_018429	exon16	c.C2302T	p.Q768X	ATATTACAGCCTG	.	143.0	42.0	86.0	0.0	.	204	.	.	.	none	.	.	PASS	Atlas-SNP
ECI2	10455	hgsc.bcm.edu	hg19	6	4128067	4128067	+	Splice_Site	SNP	T	T	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ECI2	NM_006117	exon6	c.412-2A>T	.	TACATCTGTGTAA	.	194.0	53.0	164.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
SKIV2L	6499	hgsc.bcm.edu	hg19	6	31937328	31937328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SKIV2L	NM_006929	exon28	c.G3577A	p.E1193K	ACCCCTGAGGGCC	.	160.0	41.0	162.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
NYAP1	222950	hgsc.bcm.edu	hg19	7	100087003	100087003	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	NM_173564	exon4	c.C1659T	p.A553A	CCCAGCCACAGCA	.	81.0	19.0	43.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1967	57805	hgsc.bcm.edu	hg19	8	22473664	22473664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	KIAA1967	NM_021174	exon14	c.C1748T	p.A583V	AAGAAGCCACCAA	.	133.0	39.0	142.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
TEX15	56154	hgsc.bcm.edu	hg19	8	30704070	30704070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	TEX15	NM_031271	exon1	c.A2464G	p.I822V	AATAAATGTCAAA	.	101.0	10.0	108.0	0.0	.	350	.	.	.	none	.	.	PASS	Atlas-SNP
RORB	6096	hgsc.bcm.edu	hg19	9	77286722	77286722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	RORB_ENST00000376896,colon,carcinoma,-2,3	RORB	NM_006914	exon9	c.G1129A	p.E377K	CTTATAGAACCAA	.	96.0	33.0	66.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
C10orf90	118611	hgsc.bcm.edu	hg19	10	128193076	128193076	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	C10orf90	NM_001004298	exon3	c.G693C	p.E231D	ACTGGTCTCTTTG	.	98.0	24.0	96.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
OR52B2	255725	hgsc.bcm.edu	hg19	11	6190974	6190974	+	Missense_Mutation	SNP	T	T	A	rs35364339	alternate_allele	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	OR52B2	NM_001004052	exon1	c.A583T	p.T195S	TAACAGTGATGTC	.	43.0	11.0	42.0	0.0	.	68	.	.	.	alt	.	.	PASS	Atlas-SNP
OR4C11	219429	hgsc.bcm.edu	hg19	11	55371448	55371448	+	Missense_Mutation	SNP	C	C	A	rs373760102	alternate_allele	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	OR4C11	NM_001004700	exon1	c.G402T	p.M134I	CTGGCTCATGATG	.	110.0	6.0	110.0	0.0	.	73	.	.	.	alt	.	.	PASS	Atlas-SNP
DDX47	51202	hgsc.bcm.edu	hg19	12	12974592	12974592	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	DDX47	NM_201224	exon4	c.T374C	p.V125A	TAGCTGTGATTGT	.	102.0	35.0	84.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
ANP32D	23519	hgsc.bcm.edu	hg19	12	48866684	48866684	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ANP32D	NM_012404	exon1	c.C237T	p.G79G	AGTGGGCCTAGAA	.	112.0	38.0	103.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
PPFIA2	8499	hgsc.bcm.edu	hg19	12	81839465	81839465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	PPFIA2,rectum,carcinoma,0,1	PPFIA2	NM_001220476	exon5	c.G440T	p.R147L	TCATGTCGTGACA	.	50.0	3.0	43.0	0.0	.	207	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO34	55030	hgsc.bcm.edu	hg19	14	55818351	55818351	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	FBXO34	NM_017943	exon2	c.C1243G	p.P415A	GGGTTACCTTTTT	.	210.0	57.0	238.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
DICER1	23405	hgsc.bcm.edu	hg19	14	95562982	95562982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	DICER1	NM_030621	exon24	c.G4275T	p.E1425D	CAGGCTCTCCTCC	.	61.0	24.0	49.0	0.0	.	181	.	.	.	none	.	.	PASS	Atlas-SNP
TELO2	9894	hgsc.bcm.edu	hg19	16	1552985	1552985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	TELO2	NM_016111	exon15	c.G1824T	p.Q608H	CCGGCAGCGCATG	.	166.0	19.0	155.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
CNOT1	23019	hgsc.bcm.edu	hg19	16	58580300	58580300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CNOT1	NM_206999	exon29	c.A3931C	p.N1311H	CTAAATTCTTCAG	.	159.0	43.0	131.0	0.0	.	359	.	.	.	none	.	.	PASS	Atlas-SNP
SLC13A5	284111	hgsc.bcm.edu	hg19	17	6597517	6597517	+	Splice_Site	SNP	C	C	G	rs113208940	bycluster	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SLC13A5	NM_001143838	exon9	c.1056-1G>C	.	ACATACCTAGGTG	.	66.0	17.0	27.0	0.0	.	57	.	.	.	weak	G|1.000	.	PASS	Atlas-SNP
ALOX12	239	hgsc.bcm.edu	hg19	17	6899500	6899500	+	Missense_Mutation	SNP	G	G	T	rs202195274		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ALOX12	NM_000697	exon1	c.G64T	p.V22L	AACCGCGTGCAGC	.	5.0	4.0	0.0	0.0	.	49	.	.	.	weak	.	.	PASS	Atlas-SNP
GAS7	8522	hgsc.bcm.edu	hg19	17	9846496	9846496	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	GAS7	NM_201433	exon7	c.C673T	p.Q225X	GTTTCTGGAGCAG	.	364.0	18.0	255.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1D	4642	hgsc.bcm.edu	hg19	17	30932193	30932193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MYO1D	NM_015194	exon21	c.G2776A	p.D926N	TGAGGTCTTTGTT	.	108.0	19.0	67.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
UBTF	7343	hgsc.bcm.edu	hg19	17	42289818	42289818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	UBTF	NM_014233	exon8	c.C665G	p.T222S	TTCGTAGTGGCCT	.	179.0	44.0	136.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
MRPL10	124995	hgsc.bcm.edu	hg19	17	45901623	45901623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MRPL10	NM_148887	exon6	c.C764T	p.S255F	ATGACAGAATCCT	.	179.0	87.0	110.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
SHC2	25759	hgsc.bcm.edu	hg19	19	422226	422226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SHC2	NM_012435	exon11	c.A1540G	p.T514A	GGTTGGTGACGCT	.	31.0	9.0	16.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9046479	9046479	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MUC16	NM_024690	exon5	c.G35152C	p.V11718L	CCATTACAGGTGT	.	158.0	44.0	115.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9085838	9085838	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MUC16	NM_024690	exon1	c.G5977T	p.E1993X	CTTTTTCTGAAGA	.	126.0	9.0	93.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF544	27300	hgsc.bcm.edu	hg19	19	58774085	58774085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ZNF544	NM_014480	exon7	c.G2113A	p.V705M	CTTGTAGTGCATC	.	327.0	85.0	282.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
JAG1	182	hgsc.bcm.edu	hg19	20	10625851	10625851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	JAG1	NM_000214	exon17	c.G2167A	p.E723K	CCCCCTCATCATA	.	142.0	43.0	119.0	0.0	.	213	.	.	.	none	.	.	PASS	Atlas-SNP
SON	6651	hgsc.bcm.edu	hg19	21	34918555	34918555	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SON	NM_032195	exon2	c.T114G	p.N38K	AACAAATACACCC	.	65.0	23.0	73.0	0.0	.	343	.	.	.	none	.	.	PASS	Atlas-SNP
SON	6651	hgsc.bcm.edu	hg19	21	34922861	34922861	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SON	NM_032195	exon3	c.T1324G	p.S442A	GGGCCCTCTGTGA	.	87.0	23.0	88.0	0.0	.	343	.	.	.	none	.	.	PASS	Atlas-SNP
UBE2L3	7332	hgsc.bcm.edu	hg19	22	21975858	21975858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	UBE2L3	NM_001256355	exon4	c.G539C	p.R180P	CGCTTCGGGCTGA	.	62.0	20.0	64.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
UTP14A	10813	hgsc.bcm.edu	hg19	X	129045744	129045744	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	UTP14A	NM_006649	exon6	c.C384T	p.I128I	TCAGATCCACAGA	.	180.0	109.0	138.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113265327	113265327	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SVEP1	NM_153366	exon6	c.1475delG	p.R492fs	.	.	110.0	29.0	90.0	0.0	.	326	.	0.263636	0	none	.	.	PASS	Atlas-INDEL
CHD8	57680	hgsc.bcm.edu	hg19	14	21862522	21862522	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CHD8	NM_001170629	exon30	c.5514delG	p.K1838fs	.	.	83.0	24.0	80.0	0.0	.	339	.	0.289157	0	none	.	.	PASS	Atlas-INDEL
CADPS2	93664	hgsc.bcm.edu	hg19	7	122130209	122130210	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CADPS2	NM_001009571	exon11	c.1778_1779insT	p.Y593fs	.	.	145.0	39.0	120.0	0.0	.	116	.	0.268966	0	none	.	.	PASS	Atlas-INDEL
RCAN3	11123	hgsc.bcm.edu	hg19	1	24840967	24840967	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	RCAN3	NM_001251980	exon1	c.104delA	p.D35fs	.	.	101.0	21.0	93.0	0.0	.	22	.	0.207921	0	none	.	.	PASS	Atlas-INDEL
ATXN3L	92552	hgsc.bcm.edu	hg19	X	13337247	13337248	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ATXN3L	NM_001135995	exon1	c.807_808del	p.269_270del	.	.	360.0	205.0	338.0	0.0	.	64	.	0.569444	0	none	.	.	PASS	Atlas-INDEL
NFATC3	4775	hgsc.bcm.edu	hg19	16	68200904	68200904	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	NFATC3	NM_173165	exon5	c.1759delA	p.I587fs	.	.	163.0	10.0	152.0	0.0	.	190	.	0.0613497	0	none	.	.	PASS	Atlas-INDEL
MAML1	9794	hgsc.bcm.edu	hg19	5	179192969	179192987	+	Frame_Shift_Del	DEL	GGGTCTGCAGGGCAGACCT	GGGTCTGCAGGGCAGACCT	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	GGGTCTGCAGGGCAGACCT	GGGTCTGCAGGGCAGACCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MAML1	NM_014757	exon2	c.957_975del	p.319_325del	.	.	89.0	19.0	94.0	0.0	.	118	.	0.213483	0	none	.	.	PASS	Atlas-INDEL
POM121	9883	hgsc.bcm.edu	hg19	7	72412459	72412459	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	POM121	NM_172020	exon11	c.1131delA	p.S377fs	.	.	177.0	11.0	112.0	0.0	.	131	.	0.0621469	0	none	.	.	PASS	Atlas-INDEL
CEP250	11190	hgsc.bcm.edu	hg19	20	34064377	34064378	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CEP250	NM_007186	exon16	c.1820_1821insT	p.A607fs	.	.	74.0	23.0	68.0	0.0	.	141	.	0.310811	0	none	.	.	PASS	Atlas-INDEL
MTCH2	23788	hgsc.bcm.edu	hg19	11	47653227	47653227	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MTCH2	NM_014342	exon6	c.407delT	p.L136fs	.	.	66.0	23.0	68.0	0.0	.	25	.	0.348485	0	none	.	.	PASS	Atlas-INDEL
ZNF225	7768	hgsc.bcm.edu	hg19	19	44636328	44636328	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ZNF225	NM_013362	exon5	c.1560delA	p.R520fs	.	.	127.0	12.0	120.0	0.0	.	41	.	0.0944882	0	none	.	.	PASS	Atlas-INDEL
GPR155	151556	hgsc.bcm.edu	hg19	2	175346653	175346657	+	Frame_Shift_Del	DEL	GTTAA	GTTAA	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	GTTAA	GTTAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	GPR155	NM_001267051	exon2	c.29_33del	p.10_11del	.	.	162.0	45.0	161.0	0.0	.	76	.	0.277778	0	none	.	.	PASS	Atlas-INDEL
PRMT2	3275	hgsc.bcm.edu	hg19	21	48056904	48056905	+	Splice_Site	INS	-	-	AA	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	PRMT2	NM_001535	exon2	c.39+2->AA	.	.	.	55.0	12.0	38.0	0.0	.	48	.	0.218182	0	none	.	.	PASS	Atlas-INDEL
LRRC8E	80131	hgsc.bcm.edu	hg19	19	7960603	7960603	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	LRRC8E	NM_001268284	exon3	c.114delT	p.I38fs	.	.	68.0	17.0	68.0	0.0	.	67	.	0.25	0	none	.	.	PASS	Atlas-INDEL
SAR1B	51128	hgsc.bcm.edu	hg19	5	133956720	133956720	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SAR1B	NM_001033503	exon4	c.82delC	p.L28fs	.	.	170.0	41.0	111.0	0.0	.	19	.	0.241176	0	none	.	.	PASS	Atlas-INDEL