Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PHACTR4	65979	hgsc.bcm.edu	hg19	1	28800653	28800653	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PHACTR4	NM_023923	exon6	c.A1441T	p.M481L	ATTGAAATGCTAA	.	214.0	19.0	211.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
FAM151A	338094	hgsc.bcm.edu	hg19	1	55077293	55077293	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	FAM151A	NM_176782	exon6	c.T926G	p.F309C	TGCTTGAACTGTG	.	157.0	9.0	137.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
SSX2IP	117178	hgsc.bcm.edu	hg19	1	85121610	85121610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	SSX2IP	NM_001166293	exon11	c.C1294T	p.L432F	CTTTGAGACGTTC	.	82.0	6.0	81.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
TXNIP	10628	hgsc.bcm.edu	hg19	1	145439917	145439917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	TXNIP	NM_006472	exon3	c.G463A	p.D155N	ACCCCTGATTTAA	.	171.0	19.0	206.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
PYHIN1	149628	hgsc.bcm.edu	hg19	1	158912063	158912063	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PYHIN1	NM_152501	exon5	c.T876G	p.A292A	TGAAGCTGGTCCT	.	72.0	8.0	78.0	0.0	.	208	.	.	.	none	.	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228491399	228491399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	OBSCN	NM_001271223	exon52	c.G13762A	p.D4588N	ATAGAAGATGTGA	.	117.0	14.0	90.0	0.0	.	2142	.	.	.	none	.	.	PASS	Atlas-SNP
ZP4	57829	hgsc.bcm.edu	hg19	1	238053765	238053765	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	ZP4	NM_021186	exon1	c.T171A	p.A57A	ACCCCAAGCTATT	.	89.0	9.0	61.0	0.0	.	161	.	.	.	none	.	.	PASS	Atlas-SNP
CRIM1	51232	hgsc.bcm.edu	hg19	2	36583678	36583678	+	Nonsense_Mutation	SNP	C	C	G	rs369487866	alternate_allele	TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	CRIM1	NM_016441	exon1	c.C243G	p.Y81X	GATTTACGGAACC	.	72.0	8.0	68.0	0.0	.	88	.	.	.	alt	.	.	PASS	Atlas-SNP
SRBD1	55133	hgsc.bcm.edu	hg19	2	45647009	45647009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	SRBD1	NM_018079	exon17	c.A2074G	p.K692E	TTGCCTTGAGTAA	.	170.0	19.0	111.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
EIF5B	9669	hgsc.bcm.edu	hg19	2	99978207	99978207	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	EIF5B,colon,carcinoma,0,1	EIF5B	NM_015904	exon4	c.A843T	p.V281V	AACTGTAAAATCC	.	187.0	15.0	185.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
SLC20A1	6574	hgsc.bcm.edu	hg19	2	113404533	113404533	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	SLC20A1	NM_005415	exon2	c.A128T	p.D43V	CCAATGATGTAGC	.	97.0	10.0	96.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
ERCC3	2071	hgsc.bcm.edu	hg19	2	128050232	128050232	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	ERCC3	NM_000122	exon3	c.A425T	p.K142M	CTGAGCTTCCTGA	.	116.0	12.0	110.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
UGT1A1	54658	hgsc.bcm.edu	hg19	2	234669022	234669022	+	Missense_Mutation	SNP	T	T	C	rs375204962		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	UGT1A1,NS,carcinoma,0,1	UGT1A1	NM_000463	exon1	c.T89C	p.I30T	GGAAGATACTGTT	.	52.0	5.0	44.0	1.0	.	81	.	.	.	weak	.	.	PASS	Atlas-SNP
PLCXD2	257068	hgsc.bcm.edu	hg19	3	111432757	111432757	+	Silent	SNP	C	C	T	rs372815872		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PLCXD2	NM_001185106	exon3	c.C648T	p.P216P	CTGTCCCTTCTAC	.	111.0	13.0	142.0	0.0	.	36	.	.	.	weak	.	.	PASS	Atlas-SNP
OTUD4	54726	hgsc.bcm.edu	hg19	4	146076795	146076795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	OTUD4	NM_001102653	exon9	c.G539T	p.R180I	ACCTTTCTAGACA	.	176.0	11.0	212.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
ARAP3	64411	hgsc.bcm.edu	hg19	5	141033934	141033934	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	ARAP3	NM_022481	exon33	c.A4218G	p.P1406P	ATACACTGGCTCC	.	144.0	15.0	128.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
RBM27	54439	hgsc.bcm.edu	hg19	5	145613182	145613182	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	RBM27	NM_018989	exon7	c.C1020T	p.G340G	TCCAGGCCCAGGC	.	83.0	4.0	101.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO38	81545	hgsc.bcm.edu	hg19	5	147781650	147781650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	FBXO38	NM_001271723	exon4	c.A368G	p.H123R	GGGGCCATGAGGC	.	143.0	19.0	147.0	0.0	.	115	.	.	.	none	.	.	PASS	Atlas-SNP
RFX6	222546	hgsc.bcm.edu	hg19	6	117241541	117241541	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	RFX6	NM_173560	exon12	c.T1251C	p.D417D	GGTTGATTTGAAC	.	264.0	22.0	236.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
MAD1L1	8379	hgsc.bcm.edu	hg19	7	1855740	1855740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	MAD1L1	NM_003550	exon19	c.C2123T	p.T708I	TCGAGGGTGAGCG	.	81.0	15.0	47.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
GLI3	2737	hgsc.bcm.edu	hg19	7	42004728	42004728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	GLI3	NM_000168	exon15	c.C3943A	p.Q1315K	GGTCCTGGTTCTG	.	89.0	5.0	69.0	0.0	.	312	.	.	.	none	.	.	PASS	Atlas-SNP
CALCR	799	hgsc.bcm.edu	hg19	7	93055856	93055856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	CALCR	NM_001164737	exon16	c.T1339C	p.W447R	GGTTCCACTGAAT	.	142.0	15.0	154.0	0.0	.	200	.	.	.	none	.	.	PASS	Atlas-SNP
EPHB6	2051	hgsc.bcm.edu	hg19	7	142562311	142562311	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	EPHB6	NM_004445	exon7	c.G753T	p.G251G	GGCTGGGGGGGCC	.	233.0	37.0	212.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
PDP1	54704	hgsc.bcm.edu	hg19	8	94935503	94935503	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PDP1	NM_001161780	exon3	c.T1291A	p.L431I	CACCGATTAAGGC	.	171.0	13.0	144.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
STAM	8027	hgsc.bcm.edu	hg19	10	17735224	17735224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	STAM	NM_003473	exon6	c.G448A	p.A150T	TAGGCTGCAGAAC	.	124.0	10.0	154.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
STAM	8027	hgsc.bcm.edu	hg19	10	17735225	17735225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	STAM	NM_003473	exon6	c.C449A	p.A150E	AGGCTGCAGAACA	.	122.0	10.0	154.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1092909	1092909	+	Silent	SNP	C	C	T	rs111487794		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	MUC2	NM_002457	exon30	c.C4728T	p.T1576T	ACCCACCGGCACA	.	143.0	13.0	0.0	0.0	.	614	.	.	.	weak	C|0.500;T|0.500	0.500	PASS	Atlas-SNP
KAT5	10524	hgsc.bcm.edu	hg19	11	65480307	65480307	+	Splice_Site	SNP	T	T	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	KAT5	NM_001206833	exon2	c.247+2T>A	.	TGACTGTGAGTTC	.	117.0	8.0	83.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
NDUFV1	4723	hgsc.bcm.edu	hg19	11	67379406	67379406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	NDUFV1	NM_007103	exon8	c.C1119A	p.F373L	TGAGTTCTATAAG	.	124.0	12.0	96.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
HYLS1	219844	hgsc.bcm.edu	hg19	11	125769383	125769383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	HYLS1,NS,carcinoma,0,1	HYLS1	NM_001134793	exon3	c.G120T	p.R40S	TGTCAGGAGAGAA	.	81.0	5.0	57.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
SLC26A10	65012	hgsc.bcm.edu	hg19	12	58016635	58016635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	SLC26A10	NM_133489	exon6	c.T857C	p.I286T	TGCCCATTGCACT	.	114.0	15.0	88.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
ZMYM5	9205	hgsc.bcm.edu	hg19	13	20398872	20398872	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	ZMYM5	NM_001142684	exon8	c.A1755G	p.K585K	AGAATCTTTTGAG	.	35.0	4.0	22.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
TNFRSF19	55504	hgsc.bcm.edu	hg19	13	24243093	24243093	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	TNFRSF19	NM_018647	exon9	c.A1102C	p.N368H	TCTGAAAACTTTA	.	160.0	14.0	169.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
CKAP2	26586	hgsc.bcm.edu	hg19	13	53042426	53042426	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	CKAP2	NM_001098525	exon7	c.T1493A	p.M498K	AAGAGATGCGACA	.	44.0	4.0	57.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
CLEC14A	161198	hgsc.bcm.edu	hg19	14	38723829	38723829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	CLEC14A	NM_175060	exon1	c.G1399A	p.G467R	AGTCCCCGACTTT	.	160.0	22.0	167.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
NPAP1	23742	hgsc.bcm.edu	hg19	15	24923231	24923231	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	.	NM_018958	exon1	c.T2217A	p.T739T	CAACACTGCCTCA	.	231.0	22.0	239.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28510872	28510872	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	HERC2	NM_004667	exon14	c.A1762T	p.S588C	CCTCACTGGAGCC	.	84.0	10.0	73.0	0.0	.	501	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM62	80021	hgsc.bcm.edu	hg19	15	43426530	43426530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	TMEM62	NM_024956	exon2	c.A256G	p.I86V	GAAACTATTGACA	.	83.0	10.0	84.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
FES	2242	hgsc.bcm.edu	hg19	15	91438758	91438758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	FES	NM_002005	exon19	c.G2439T	p.E813D	CCAGGAGCTGCAG	.	108.0	8.0	121.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
DECR2	26063	hgsc.bcm.edu	hg19	16	457438	457438	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	DECR2	NM_020664	exon4	c.T215G	p.L72R	GGAAGCTGGCTGG	.	109.0	9.0	70.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
TSC2	7249	hgsc.bcm.edu	hg19	16	2126139	2126139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	TSC2	NM_001114382	exon24	c.T2710C	p.F904L	CTGCCCTTCCGGA	.	104.0	13.0	64.0	0.0	.	364	.	.	.	none	.	.	PASS	Atlas-SNP
PRPF8	10594	hgsc.bcm.edu	hg19	17	1564455	1564455	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PRPF8	NM_006445	exon28	c.T4340A	p.V1447D	TTCAAAACCTAGA	.	79.0	9.0	66.0	0.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
NEURL4	84461	hgsc.bcm.edu	hg19	17	7220554	7220554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	NEURL4	NM_032442	exon28	c.C4454T	p.A1485V	GCCCCAGCATATT	.	50.0	5.0	54.0	0.0	.	192	.	.	.	none	.	.	PASS	Atlas-SNP
SCRN2	90507	hgsc.bcm.edu	hg19	17	45915217	45915217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	SCRN2	NM_138355	exon8	c.A1271G	p.Y424C	TACGCATAAGCCT	.	45.0	8.0	47.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
TEX2	55852	hgsc.bcm.edu	hg19	17	62290509	62290509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	TEX2	NM_018469	exon2	c.G1069A	p.G357S	CGTAGCCATCCCC	.	115.0	12.0	93.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1F	4542	hgsc.bcm.edu	hg19	19	8604865	8604865	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	MYO1F	NM_012335	exon16	c.A1658C	p.K553T	CGCCCCTTCTTGT	.	87.0	6.0	80.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
GPRASP1	9737	hgsc.bcm.edu	hg19	X	101910683	101910683	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	GPRASP1	NM_001099411	exon3	c.G1842C	p.G614G	TATTGGGTCCTGG	.	160.0	24.0	145.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
F8	2157	hgsc.bcm.edu	hg19	X	154157883	154157883	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	F8	NM_000132	exon14	c.G4182A	p.T1394T	ACTCCTCGTAAGG	.	137.0	25.0	175.0	0.0	.	646	.	.	.	none	.	.	PASS	Atlas-SNP
MYH10	4628	hgsc.bcm.edu	hg19	17	8452026	8452026	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	MYH10	NM_001256012	exon10	c.1000delG	p.D334fs	.	.	208.0	19.0	197.0	0.0	.	148	.	0.0913462	0	none	.	.	PASS	Atlas-INDEL
LYAR	55646	hgsc.bcm.edu	hg19	4	4276371	4276375	+	Frame_Shift_Del	DEL	CTTCA	CTTCA	-	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	CTTCA	CTTCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	LYAR	NM_001145725	exon7	c.552_556del	p.184_186del	.	.	175.0	14.0	206.0	0.0	.	36	.	0.08	0	none	.	.	PASS	Atlas-INDEL
SNX30	401548	hgsc.bcm.edu	hg19	9	115567070	115567071	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	SNX30	NM_001012994	exon2	c.171_172insA	p.P57fs	.	.	265.0	27.0	252.0	0.0	.	32	.	0.101887	0	none	.	.	PASS	Atlas-INDEL
PRPSAP1	5635	hgsc.bcm.edu	hg19	17	74307703	74307703	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PRPSAP1	NM_002766	exon10	c.1079delT	p.I360fs	.	.	98.0	10.0	55.0	0.0	.	32	.	0.102041	0	none	.	.	PASS	Atlas-INDEL