Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
KHDRBS1	10657	hgsc.bcm.edu	hg19	1	32508212	32508212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	KHDRBS1	NM_006559	exon9	c.A1319G	p.Y440C	ACCCATATGGACG	.	58.0	13.0	66.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
TTLL7	79739	hgsc.bcm.edu	hg19	1	84348653	84348653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	TTLL7	NM_024686	exon20	c.A2536G	p.N846D	TGGAATTACCCCA	.	162.0	21.0	209.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
CFH	3075	hgsc.bcm.edu	hg19	1	196706023	196706023	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	CFH	NM_000186	exon16	c.A2483T	p.N828I	CACTGAATTATCG	.	61.0	6.0	84.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
DIS3L2	129563	hgsc.bcm.edu	hg19	2	233075106	233075106	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	DIS3L2	NM_152383	exon10	c.C1195G	p.L399V	AAGCCACTCGCTG	.	79.0	9.0	77.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
OTOL1	131149	hgsc.bcm.edu	hg19	3	161221062	161221062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	OTOL1	NM_001080440	exon4	c.A766G	p.K256E	GGACAGAAAGGTG	.	4.0	4.0	4.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
WASF1	8936	hgsc.bcm.edu	hg19	6	110424747	110424747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	WASF1	NM_001024935	exon8	c.G727T	p.V243L	GATCCACGTATGT	.	70.0	4.0	99.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121681010	121681010	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	PTPRZ1	NM_002851	exon21	c.G5778A	p.V1926V	TGCAGTGGGGCCT	.	108.0	18.0	118.0	0.0	.	605	.	.	.	none	.	.	PASS	Atlas-SNP
MTBP	27085	hgsc.bcm.edu	hg19	8	121518998	121518998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	MTBP	NM_022045	exon16	c.C1780T	p.P594S	GAGGGTCCTCGGG	.	84.0	6.0	87.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
CAMK1D	57118	hgsc.bcm.edu	hg19	10	12811756	12811756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	CAMK1D_ENST00000378847,NS,carcinoma,0,2	CAMK1D	NM_153498	exon5	c.G523A	p.G175R	GGCAAAGGAGATG	.	92.0	17.0	123.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1253260	1253260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	MUC5B	NM_002458	exon15	c.C1713A	p.D571E	GGCTGACGACTTC	.	43.0	4.0	59.0	0.0	.	473	.	.	.	none	.	.	PASS	Atlas-SNP
KCNK7	10089	hgsc.bcm.edu	hg19	11	65360850	65360850	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	KCNK7	NM_033348	exon3	c.A723G	p.G241G	GGTCCCTCCACCT	.	98.0	4.0	107.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
CELA1	1990	hgsc.bcm.edu	hg19	12	51740415	51740415	+	Missense_Mutation	SNP	A	A	C	rs55827519	alternate_allele	TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.,3	CELA1	NM_001971	exon1	c.T8G	p.V3G	TAAAGGACCAGCA	.	80.0	4.0	81.0	1.0	.	39	.	.	.	alt	.	.	PASS	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89345492	89345492	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	ANKRD11	NM_001256183	exon9	c.C7458T	p.L2486L	GATGTGGAGCTTG	.	50.0	11.0	28.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
SLFN11	91607	hgsc.bcm.edu	hg19	17	33679780	33679780	+	Silent	SNP	G	G	A	rs377363363		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	SLFN11	NM_152270	exon5	c.C2301T	p.A767A	CCATTCGGCTTCA	.	94.0	21.0	117.0	0.0	.	112	.	.	.	weak	.	.	PASS	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	8379245	8379245	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	PTPRM	NM_001105244	exon28	c.G3693A	p.R1231R	AAACCGGTGCATG	.	107.0	22.0	73.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
PRTN3	5657	hgsc.bcm.edu	hg19	19	841048	841048	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	PRTN3	NM_002777	exon1	c.C40T	p.L14L	TCCGTGCTGCTGG	.	49.0	12.0	32.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
HNRNPL	3191	hgsc.bcm.edu	hg19	19	39336576	39336576	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	HNRNPL	NM_001533	exon3	c.C541G	p.R181G	CAGGGCGGGAGAT	.	227.0	31.0	188.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
LILRA6	79168	hgsc.bcm.edu	hg19	19	54745734	54745734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A2RRG4_HUMAN,NS,carcinoma,0,1	LILRA6	NM_024318	exon4	c.C376A	p.L126I	CTGAGAGGGTGGG	.	64.0	23.0	90.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP10-3	386682	hgsc.bcm.edu	hg19	21	45978127	45978127	+	Missense_Mutation	SNP	C	C	T	rs369545090		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	KRTAP10-3	NM_198696	exon1	c.G472A	p.V158M	GGGACACGGAGGA	.	152.0	31.0	162.0	0.0	.	17	.	.	.	weak	.	.	PASS	Atlas-SNP
GTSE1	51512	hgsc.bcm.edu	hg19	22	46724721	46724721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	GTSE1	NM_016426	exon10	c.A1861C	p.K621Q	TTCTCCAAAAGTA	.	255.0	43.0	226.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
COX3	5742	hgsc.bcm.edu	hg19	MT	9487	9487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	.	ENST00000362079	exon1	c.T281C	p.F94S	TTTTCTTCGCAGG	.	11.0	7.0	11.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	11493	11493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	.	ENST00000361381	exon1	c.G734A	p.R245H	TAATACGCCTCAC	.	18.0	13.0	5.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14466	14466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	.	ENST00000361681	exon1	c.A208G	p.T70A	CTGTAGTATATCC	.	19.0	4.0	19.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP