Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
SRRM1	10250	hgsc.bcm.edu	hg19	1	24979017	24979017	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SRRM1	NM_005839	exon7	c.A818T	p.K273M	AGGAGAAGACCCG	.	25.0	7.0	44.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
PEF1	553115	hgsc.bcm.edu	hg19	1	32100869	32100869	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	PEF1	NM_012392	exon2	c.A279G	p.P93P	TGGAGGTGGCTGA	.	93.0	21.0	126.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
SIPA1L2	57568	hgsc.bcm.edu	hg19	1	232650793	232650793	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SIPA1L2	NM_020808	exon1	c.T293G	p.L98R	TCCCACAGTGCCT	.	177.0	39.0	224.0	0.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
SOS1	6654	hgsc.bcm.edu	hg19	2	39285904	39285904	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SOS1	NM_005633	exon3	c.G255A	p.W85X	TATTGCCCATTTA	.	109.0	33.0	156.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
TANC1	85461	hgsc.bcm.edu	hg19	2	160086335	160086335	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	TANC1,NS,neuroblastoma,0,1	TANC1	NM_033394	exon27	c.C4398A	p.P1466P	TTCTCCCCAGGAA	.	144.0	36.0	146.0	1.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
IRS1	3667	hgsc.bcm.edu	hg19	2	227662872	227662872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	IRS1	NM_005544	exon1	c.G583A	p.V195M	GCTTCACGAAGCT	.	93.0	23.0	86.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
SFMBT1	51460	hgsc.bcm.edu	hg19	3	52939193	52939193	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SFMBT1	NM_016329	exon21	c.G2560T	p.E854X	TCCTCTCTATGTG	.	118.0	5.0	153.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF717	100131827	hgsc.bcm.edu	hg19	3	75790798	75790798	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	ZNF717,NS,carcinoma,0,2	ZNF717	NM_001128223	exon3	c.C147T	p.D49D	CATCACGTCCCTG	.	20.0	9.0	14.0	1.0	.	160	.	.	.	none	.	.	PASS	Atlas-SNP
CPNE4	131034	hgsc.bcm.edu	hg19	3	131254172	131254172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	CPNE4	NM_130808	exon16	c.C1541T	p.A514V	GGAGATGCCTGCA	.	114.0	25.0	124.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
TIFA	92610	hgsc.bcm.edu	hg19	4	113199250	113199250	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	TIFA	NM_052864	exon2	c.A323C	p.K108T	TCCATTTTATTTA	.	56.0	16.0	86.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
METTL14	57721	hgsc.bcm.edu	hg19	4	119631350	119631350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	METTL14	NM_020961	exon11	c.T1264A	p.S422T	GGAACTTCTGCTG	.	93.0	16.0	88.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123161284	123161284	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	KIAA1109	NM_015312	exon27	c.G4447C	p.E1483Q	ATTGTAGAAGGTG	.	103.0	23.0	117.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP26	23092	hgsc.bcm.edu	hg19	5	142283206	142283206	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ARHGAP26	NM_015071	exon8	c.G804C	p.M268I	CACCATGGAGGGA	.	54.0	11.0	60.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
GABRB2	2561	hgsc.bcm.edu	hg19	5	160753381	160753381	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	GABRB2_ENST00000274547,NS,carcinoma,0,1	GABRB2	NM_021911	exon10	c.G1185C	p.L395L	CGTATACAGAGAG	.	122.0	5.0	143.0	0.0	.	161	.	.	.	none	.	.	PASS	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169477372	169477372	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	DOCK2	NM_004946	exon41	c.G4184C	p.G1395A	CCCCGGGAGATGA	.	137.0	32.0	148.0	0.0	.	389	.	.	.	none	.	.	PASS	Atlas-SNP
F12	2161	hgsc.bcm.edu	hg19	5	176831305	176831305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	F12	NM_000505	exon9	c.C910T	p.P304S	GGGTCGGAGGCGC	.	30.0	7.0	38.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
BRD2	6046	hgsc.bcm.edu	hg19	6	32945545	32945545	+	Missense_Mutation	SNP	G	G	T	rs55650066	bycluster;alternate_allele	TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	BRD2	NM_005104	exon9	c.G1341T	p.E447D	ATTTGAGTTCCGT	.	108.0	5.0	143.0	0.0	.	70	.	.	.	alt	.	.	PASS	Atlas-SNP
EEF1A1	1915	hgsc.bcm.edu	hg19	6	74229620	74229620	+	Missense_Mutation	SNP	T	T	C	rs11266800		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	EEF1A1	NM_001402	exon2	c.A130G	p.K44E	CCTCCTTCTCAAA	.	162.0	13.0	185.0	0.0	.	56	.	.	.	weak	.	.	PASS	Atlas-SNP
ZNF292	23036	hgsc.bcm.edu	hg19	6	87964665	87964665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZNF292	NM_015021	exon8	c.T1318C	p.W440R	ACTCAATGGCCCT	.	38.0	5.0	53.0	0.0	.	479	.	.	.	none	.	.	PASS	Atlas-SNP
ANKIB1	54467	hgsc.bcm.edu	hg19	7	92019370	92019370	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ANKIB1	NM_019004	exon15	c.T1992C	p.Y664Y	TTCTTATCCATAT	.	120.0	29.0	109.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
SLC26A5	375611	hgsc.bcm.edu	hg19	7	103019735	103019735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC26A5	NM_206883	exon16	c.T1632G	p.I544M	ATAGTAAATTGGT	.	100.0	34.0	113.0	0.0	.	231	.	.	.	none	.	.	PASS	Atlas-SNP
UBE3C	9690	hgsc.bcm.edu	hg19	7	157046775	157046775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	UBE3C	NM_014671	exon20	c.A2822G	p.Q941R	TCCGCCAGGGCCT	.	60.0	21.0	59.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
PDLIM2	64236	hgsc.bcm.edu	hg19	8	22452077	22452077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	PDLIM2	NM_176871	exon10	c.C1016T	p.S339L	GATTGTCACTGGA	.	167.0	11.0	193.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
SLC7A13	157724	hgsc.bcm.edu	hg19	8	87226722	87226722	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	SLC7A13,colon,carcinoma,0,1	SLC7A13	NM_138817	exon4	c.A1333T	p.R445X	CCAATCTTATTTT	.	53.0	17.0	72.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
ZHX2	22882	hgsc.bcm.edu	hg19	8	123965936	123965936	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZHX2	NM_014943	exon3	c.A2186C	p.Q729P	TTCCACAATATTA	.	107.0	27.0	128.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
EPC1	80314	hgsc.bcm.edu	hg19	10	32582651	32582651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	EPC1	NM_025209	exon3	c.G328T	p.A110S	GTTCAGCATCCAA	.	37.0	11.0	54.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF33B	7582	hgsc.bcm.edu	hg19	10	43088537	43088537	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZNF33B	NM_006955	exon5	c.A1861C	p.K621Q	GTGACTTCTGGCA	.	183.0	42.0	205.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
SLC39A5	283375	hgsc.bcm.edu	hg19	12	56630209	56630209	+	Silent	SNP	C	C	G	rs139155884	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC39A5	NM_173596	exon9	c.C975G	p.L325L	GAATCTCGAAACA	.	100.0	27.0	86.0	0.0	.	52	.	.	.	alt	C|0.999;T|0.001	.	PASS	Atlas-SNP
STAT2	6773	hgsc.bcm.edu	hg19	12	56742947	56742947	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	STAT2	NM_005419	exon16	c.G1440A	p.Q480Q	CCCTACCTGAAGG	.	160.0	41.0	165.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39265553	39265553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	FREM2	NM_207361	exon1	c.A4072G	p.T1358A	AAACCTACTGGTG	.	98.0	23.0	97.0	0.0	.	385	.	.	.	none	.	.	PASS	Atlas-SNP
MLNR	2862	hgsc.bcm.edu	hg19	13	49796387	49796387	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	MLNR,NS,carcinoma,0,1	MLNR	NM_001507	exon2	c.C1113G	p.L371L	GCTGCTCGCAAGG	.	85.0	24.0	119.0	1.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
TSC2	7249	hgsc.bcm.edu	hg19	16	2122849	2122849	+	Splice_Site	SNP	G	G	A	rs45517218	alternate_allele	TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	TSC2_ENST00000219476,colon,carcinoma,0,2	TSC2	NM_000548	exon21	c.2221-1G>A	.	TCATCAGCTTTCA	.	60.0	29.0	102.0	0.0	.	364	.	.	.	alt	.	.	PASS	Atlas-SNP
NLRC3	197358	hgsc.bcm.edu	hg19	16	3598164	3598164	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	NLRC3	NM_178844	exon16	c.A2742G	p.L914L	GAGCTGTAGTGCT	.	9.0	8.0	10.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
NOS2	4843	hgsc.bcm.edu	hg19	17	26107895	26107895	+	Missense_Mutation	SNP	C	C	A	rs200678947	bycluster;alternate_allele	TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	NOS2,NS,carcinoma,0,1	NOS2	NM_000625	exon9	c.G902T	p.R301L	TCGAAGCGGCCGT	.	66.0	3.0	65.0	0.0	.	113	.	.	.	alt	.	.	PASS	Atlas-SNP
SLC38A10	124565	hgsc.bcm.edu	hg19	17	79220316	79220316	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC38A10	NM_001037984	exon16	c.G2400A	p.Q800Q	GGAGCGCTGGTTA	.	45.0	13.0	53.0	0.0	.	133	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF532	55205	hgsc.bcm.edu	hg19	18	56587630	56587630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZNF532	NM_018181	exon4	c.C2111T	p.T704I	CTTCCACTCTTCA	.	80.0	18.0	74.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF57	126295	hgsc.bcm.edu	hg19	19	2916127	2916127	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZNF57	NM_173480	exon3	c.A182C	p.Y61S	ATATGTACGGGCA	.	96.0	4.0	113.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
HNRNPUL1	11100	hgsc.bcm.edu	hg19	19	41800265	41800265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	HNRNPUL1	NM_007040	exon9	c.C1289G	p.P430R	GCCTGCCTGCTGC	.	69.0	15.0	89.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
ZFP64	55734	hgsc.bcm.edu	hg19	20	50769885	50769885	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZFP64	NM_018197	exon6	c.G846A	p.S282S	CTCCCCCGAGTGC	.	46.0	16.0	75.0	0.0	.	240	.	.	.	none	.	.	PASS	Atlas-SNP
DENR	8562	hgsc.bcm.edu	hg19	12	123253468	123253468	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	DENR	NM_003677	exon7	c.551delA	p.E184fs	.	.	54.0	16.0	60.0	0.0	.	8	.	0.296296	0	none	.	.	PASS	Atlas-INDEL
IFIT5	24138	hgsc.bcm.edu	hg19	10	91178386	91178387	+	Frame_Shift_Ins	INS	-	-	GCTC	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	IFIT5	NM_012420	exon2	c.1430_1431insGCTC	p.E477fs	.	.	113.0	11.0	127.0	0.0	.	32	.	0.0973451	0	none	.	.	PASS	Atlas-INDEL
ZNF318	24149	hgsc.bcm.edu	hg19	6	43333130	43333130	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZNF318	NM_014345	exon2	c.449delT	p.I150fs	.	.	73.0	25.0	85.0	0.0	.	175	.	0.342466	0	none	.	.	PASS	Atlas-INDEL